Sed0020517 (gene) Chayote v1

Overview


Name	Sed0020517
Type	gene
Organism	Sechium edule (Chayote v1)
Description	SAM domain-containing protein
Location	LG06: 44751071 .. 44752519 (-)
RNA-Seq Expression	Sed0020517
Synteny	Sed0020517

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGGATCTCATGGCTTTCAAGCTCAGGTCTCCATCCGAGAGTGGCGTACGAGTACGGCCTCGCCTTCTCCCACAACGAGCTCGAACACGAAGACATCCTCTACTTCAACCACGAATTCCTCCTCAGCCTCGGAATCTCCATCGCCAAACACCGCCTCCAGATCCTCAAACTCGCCCGCTCCGACGCCGCCGCCCTCCGCCGCCCCCCCCTCTCCCGCCGCTTCCGCCTCGCCCTCGCCCTCGCCAAGCGCCGCCTCCAGGATCTCATCCGGAACCTCACTCGCCGCCCCCCCGCCCTCGACGGCGCCACCAAAGCCCTAATCCTCCTCCCCAGATCTAAGAAATTCGCCCCCGCCAAACGCCACGGGACCCTTCTCATTACCAACGGAAGCCCGGCGCCGCCCGGCGGTGGTCTCTGGCCGAGGATCGAGAGCTTTTCCGGCCCGATTGTGTGCGATTTCCGGCGAGAGGAGAAGGAGGAGAAAGGGGATTGTTATTGGGGAAATGAAGTTGAGGAAATTAGGTGGGATGCTATGTTTCAGAATTTGAAACCTACCTGATTTCTTTTTGCTACATTTCAGAAATGAAAATATATTTTTCAAAAATTAAATAGTTATTAAAAAAAAAAAAAAAAGACAATTCAGTGTAGGATTTCGATTTTTGAAAATTAAGTTAGCTTCTTTTCATTTGTTATCTACTTCTAAAAGCCAAAGCCAAATTTTAAACCTGGTTCGAAAATTTAGTTTATTTTGATTTGCATTTTCTTAACTAAATTTCAAGAATTAAAATGTGTTTATGAAATTAGTAGGGAGAATTTTCAAAAATTGAAAAACAAAAAATTAAATAATTATCGAGTGTTTCAAGTTTTTTTTTTGTTTGGGTTAATTTAATGGTGAGAGATAGGTTTTTGTGTTCTTCCACCAACAGATGTTTTAGATTTTAGTATGTTACTAAGATTGAGTTTGTGAATTGAAAATTTGGGTTTTTTTATTTATTTTTTAATCGTGAGTGTTCGTATTTGTTTGTGCATATCTCGATTATTCTCGGGATAAATCAACCCACTCTGGGTTGTGTTTTTCTTTTCTTTTTTTAGTGGTGGGTCTAGAAGAATGCAAGCTTTAGGAACAAGGGTCAGATTCAAAATGATGGTTGCCTCTCTTTACTTTTTTTTTTTTTTTTTAATCATTCATGGCCTTTAGGTCTCTTTTTCTAAGAGATATTGATTTGTTTAGATAATGATAATCTCTGCCAAACCCAGTTTTTGTTCTTGTGGTTTGAGGTTTGTAATGTAATGTAATGTAATATTGATATGTTATTATCTAAGTTAATACAATTTTTTTTTATATGTATAGTTATTTATTTTTTCTTTATTTTCAGACTTTTTTTTTTTTTTTTTGTTCAGAAAATTTGTTTCTTACTGTGGAAGAAAGTTTGGTGTGCTTTGA

mRNA sequence

ATGGATTGGATCTCATGGCTTTCAAGCTCAGGTCTCCATCCGAGAGTGGCGTACGAGTACGGCCTCGCCTTCTCCCACAACGAGCTCGAACACGAAGACATCCTCTACTTCAACCACGAATTCCTCCTCAGCCTCGGAATCTCCATCGCCAAACACCGCCTCCAGATCCTCAAACTCGCCCGCTCCGACGCCGCCGCCCTCCGCCGCCCCCCCCTCTCCCGCCGCTTCCGCCTCGCCCTCGCCCTCGCCAAGCGCCGCCTCCAGGATCTCATCCGGAACCTCACTCGCCGCCCCCCCGCCCTCGACGGCGCCACCAAAGCCCTAATCCTCCTCCCCAGATCTAAGAAATTCGCCCCCGCCAAACGCCACGGGACCCTTCTCATTACCAACGGAAGCCCGGCGCCGCCCGGCGGTGGTCTCTGGCCGAGGATCGAGAGCTTTTCCGGCCCGATTGTGTGCGATTTCCGGCGAGAGGAGAAGGAGGAGAAAGGGGATTGTTATTGGGGAAATGAAGTTGAGGAAATTAGAAAATTTGTTTCTTACTGTGGAAGAAAGTTTGGTGTGCTTTGA

Coding sequence (CDS)

ATGGATTGGATCTCATGGCTTTCAAGCTCAGGTCTCCATCCGAGAGTGGCGTACGAGTACGGCCTCGCCTTCTCCCACAACGAGCTCGAACACGAAGACATCCTCTACTTCAACCACGAATTCCTCCTCAGCCTCGGAATCTCCATCGCCAAACACCGCCTCCAGATCCTCAAACTCGCCCGCTCCGACGCCGCCGCCCTCCGCCGCCCCCCCCTCTCCCGCCGCTTCCGCCTCGCCCTCGCCCTCGCCAAGCGCCGCCTCCAGGATCTCATCCGGAACCTCACTCGCCGCCCCCCCGCCCTCGACGGCGCCACCAAAGCCCTAATCCTCCTCCCCAGATCTAAGAAATTCGCCCCCGCCAAACGCCACGGGACCCTTCTCATTACCAACGGAAGCCCGGCGCCGCCCGGCGGTGGTCTCTGGCCGAGGATCGAGAGCTTTTCCGGCCCGATTGTGTGCGATTTCCGGCGAGAGGAGAAGGAGGAGAAAGGGGATTGTTATTGGGGAAATGAAGTTGAGGAAATTAGAAAATTTGTTTCTTACTGTGGAAGAAAGTTTGGTGTGCTTTGA

Protein sequence

MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPALDGATKALILLPRSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEEKGDCYWGNEVEEIRKFVSYCGRKFGVL

Homology

[Close]

BLAST of Sed0020517 vs. NCBI nr
Match: XP_023525324.1 (uncharacterized protein LOC111788960 [Cucurbita pepo subsp. pepo] >KAG7036525.1 hypothetical protein SDJN02_00143, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 183.0 bits (463), Expect = 2.5e-42
Identity = 108/188 (57.45%), Postives = 126/188 (67.02%), Query Frame = 0


Query: 1   MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLA 60
           MDW SWLS + L P + YEYGLA SHNELE EDI+YFNHEFL S+GISIAKHRL+ILKLA
Sbjct: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPALDG-ATKALILLP------- 120
           R D A   RP    R  LA+   KR    LIRN +      DG  +KAL+++P       
Sbjct: 61  RKDGALHPRP--ITRLLLAIKRTKRCFAKLIRNFS----VHDGDDSKALVVVPKSTYSGK 120

Query: 121 ---RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREE-KEEKGDCYW 177
              R+KK   AK+ G  L+TNGSPAP   G+WPRIESFSGP+V D RR+E KEE+ D YW
Sbjct: 121 LLKRNKKLMVAKQQGRFLLTNGSPAP---GVWPRIESFSGPLVYDLRRDEKKEEEEDGYW 179

[Close]

BLAST of Sed0020517 vs. NCBI nr
Match: KAG6606819.1 (hypothetical protein SDJN03_00161, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 183.0 bits (463), Expect = 2.5e-42
Identity = 108/188 (57.45%), Postives = 126/188 (67.02%), Query Frame = 0


Query: 1   MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLA 60
           MDW SWLS + L P + YEYGLA SHNELE EDI+YFNHEFL S+GISIAKHRL+ILKLA
Sbjct: 33  MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 92

Query: 61  RSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPALDG-ATKALILLP------- 120
           R D A   RP    R  LA+   KR    LIRN +      DG  +KAL+++P       
Sbjct: 93  RKDGALHPRP--ITRLLLAIKRTKRCFAKLIRNFS----VHDGDDSKALVVVPKSTYSGK 152

Query: 121 ---RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREE-KEEKGDCYW 177
              R+KK   AK+ G  L+TNGSPAP   G+WPRIESFSGP+V D RR+E KEE+ D YW
Sbjct: 153 LLKRNKKLMVAKQQGRFLLTNGSPAP---GVWPRIESFSGPLVYDLRRDEKKEEEEDGYW 211

[Close]

BLAST of Sed0020517 vs. NCBI nr
Match: XP_022998747.1 (uncharacterized protein LOC111493318 [Cucurbita maxima])

HSP 1 Score: 182.6 bits (462), Expect = 3.2e-42
Identity = 108/189 (57.14%), Postives = 126/189 (66.67%), Query Frame = 0


Query: 1   MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLA 60
           MDW SWLS + L P + YEYGLA SHNELE EDI+YFNHEFL S+GISIAKHRL+ILKLA
Sbjct: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPALDG-ATKALILLP------- 120
           R D A   RP    R  LA+   KR    LIRN +      DG  +KAL+++P       
Sbjct: 61  RKDGALHPRP--ITRLLLAIKRTKRCFAKLIRNFS----VHDGDDSKALVVVPKSTYSGK 120

Query: 121 ---RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEK--EEKGDCY 177
              R+KK   AK+ G  L+TNGSPAP   G+WPRIESFSGP+V D RR+EK  EE+ D Y
Sbjct: 121 LLKRNKKLMVAKQQGRFLLTNGSPAP---GVWPRIESFSGPLVYDLRRDEKKEEEEEDGY 180

[Close]

BLAST of Sed0020517 vs. NCBI nr
Match: XP_022948497.1 (uncharacterized protein LOC111452156 [Cucurbita moschata])

HSP 1 Score: 179.5 bits (454), Expect = 2.7e-41
Identity = 107/188 (56.91%), Postives = 125/188 (66.49%), Query Frame = 0


Query: 1   MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLA 60
           MDW SWLS + L P + YEYGLA SHNELE EDI+YFNHEFL S+GISIAKHRL+ILKLA
Sbjct: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPALDG-ATKALILLP------- 120
           R D A   RP    R  LA+   KR    LIRN +      DG  +KAL+++P       
Sbjct: 61  RKDGALHPRP--ITRLLLAIKRTKRCFAKLIRNFS----VHDGDDSKALVVVPKSTYSGK 120

Query: 121 ---RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREE-KEEKGDCYW 177
              R+KK   AK+ G  L+TNGSPAP   G+WPRIESFSGP+V D RR+E KEE+ D  W
Sbjct: 121 LLKRNKKLMVAKQQGRFLLTNGSPAP---GVWPRIESFSGPLVYDLRRDEKKEEEEDGCW 179

[Close]

BLAST of Sed0020517 vs. NCBI nr
Match: XP_038900622.1 (uncharacterized protein LOC120087790 [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 3.3e-39
Identity = 101/186 (54.30%), Postives = 123/186 (66.13%), Query Frame = 0


Query: 1   MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLA 60
           MDW SWLS + LHP + YEYGLA ++NELEHEDILYFNHEFL S+GISIAKHRL+ILKLA
Sbjct: 1   MDWFSWLSKTTLHPSLVYEYGLALANNELEHEDILYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPALDGATKALILLP-------- 120
           R D A   RP    R  LAL   KRR  +LIRN T         +KAL+L+P        
Sbjct: 61  RKDNALHPRP--ITRLLLALKKTKRRFSNLIRNFTHHHHDQLDDSKALVLVPKSSYAAKF 120

Query: 121 --RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEEKGDCYWGN 177
             R+K F+  K  G  L+TNGSP P  G +WPRI++FSGPI+ DF  EEK+++ +    +
Sbjct: 121 LKRNKTFSVGKPQGRFLLTNGSPDP--GVIWPRIQTFSGPILYDFPAEEKKKEKE----D 178

[Close]

BLAST of Sed0020517 vs. ExPASy TrEMBL
Match: A0A6J1K8U0 (uncharacterized protein LOC111493318 OS=Cucurbita maxima OX=3661 GN=LOC111493318 PE=4 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 1.6e-42
Identity = 108/189 (57.14%), Postives = 126/189 (66.67%), Query Frame = 0


Query: 1   MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLA 60
           MDW SWLS + L P + YEYGLA SHNELE EDI+YFNHEFL S+GISIAKHRL+ILKLA
Sbjct: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPALDG-ATKALILLP------- 120
           R D A   RP    R  LA+   KR    LIRN +      DG  +KAL+++P       
Sbjct: 61  RKDGALHPRP--ITRLLLAIKRTKRCFAKLIRNFS----VHDGDDSKALVVVPKSTYSGK 120

Query: 121 ---RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEK--EEKGDCY 177
              R+KK   AK+ G  L+TNGSPAP   G+WPRIESFSGP+V D RR+EK  EE+ D Y
Sbjct: 121 LLKRNKKLMVAKQQGRFLLTNGSPAP---GVWPRIESFSGPLVYDLRRDEKKEEEEEDGY 180

[Close]

BLAST of Sed0020517 vs. ExPASy TrEMBL
Match: A0A6J1G9F1 (uncharacterized protein LOC111452156 OS=Cucurbita moschata OX=3662 GN=LOC111452156 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.3e-41
Identity = 107/188 (56.91%), Postives = 125/188 (66.49%), Query Frame = 0


Query: 1   MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLA 60
           MDW SWLS + L P + YEYGLA SHNELE EDI+YFNHEFL S+GISIAKHRL+ILKLA
Sbjct: 1   MDWFSWLSKTTLDPSLVYEYGLALSHNELEQEDIVYFNHEFLQSIGISIAKHRLEILKLA 60

Query: 61  RSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPALDG-ATKALILLP------- 120
           R D A   RP    R  LA+   KR    LIRN +      DG  +KAL+++P       
Sbjct: 61  RKDGALHPRP--ITRLLLAIKRTKRCFAKLIRNFS----VHDGDDSKALVVVPKSTYSGK 120

Query: 121 ---RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREE-KEEKGDCYW 177
              R+KK   AK+ G  L+TNGSPAP   G+WPRIESFSGP+V D RR+E KEE+ D  W
Sbjct: 121 LLKRNKKLMVAKQQGRFLLTNGSPAP---GVWPRIESFSGPLVYDLRRDEKKEEEEDGCW 179

[Close]

BLAST of Sed0020517 vs. ExPASy TrEMBL
Match: A0A6J1DIZ2 (uncharacterized protein LOC111020921 OS=Momordica charantia OX=3673 GN=LOC111020921 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 6.8e-38
Identity = 100/186 (53.76%), Postives = 122/186 (65.59%), Query Frame = 0


Query: 1   MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLA 60
           MDW SWLS + L P + YEYGLAF+HNELE +DI+YFNHEFL S+GISIAKHRL+ILKLA
Sbjct: 32  MDWFSWLSKTTLDPSLVYEYGLAFAHNELEEDDIVYFNHEFLQSMGISIAKHRLEILKLA 91

Query: 61  RSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRRPPALDGATKALILLP-------- 120
           R + A   RP    R  LA+   KR   +LIRN +      D  +KAL+++P        
Sbjct: 92  RKENALHPRP--VTRLLLAIKRTKRCFSNLIRNFSHAHRRADD-SKALVVVPKSTYAGKL 151

Query: 121 --RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEEKGDCYWGN 177
             R+KK   AK+ G+LL+TNGS   P     PR +SFSGPIV + RREE+E   D YWGN
Sbjct: 152 LKRNKKLIIAKQQGSLLLTNGSSPAPAP---PRADSFSGPIVYNLRREEEE---DGYWGN 208

[Close]

BLAST of Sed0020517 vs. ExPASy TrEMBL
Match: W9RBY4 (SAM domain-containing protein OS=Morus notabilis OX=981085 GN=L484_025708 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35
Identity = 100/196 (51.02%), Postives = 120/196 (61.22%), Query Frame = 0


Query: 1   MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLA 60
           MDW SWLS +GL P + YEYGLAF+HNELE EDI+YFNHEFL S+GISIAKHRL+ILKLA
Sbjct: 1   MDWFSWLSKTGLEPSLVYEYGLAFAHNELEEEDIIYFNHEFLQSMGISIAKHRLEILKLA 60

Query: 61  RSDAAALRRPPL-SRRFRLALALAKRRLQDLIRNLTRRPPALDGATKALILLPRSKKF-- 120
           R +  +  R P    R  +A+   KR L   IR L RR    D  + AL+++ R   +  
Sbjct: 61  RKEKGSSGRGPRPMARLLVAIKRTKRCLAKYIRTLVRR----DQDSSALVVVQRPSGYGN 120

Query: 121 ----APAKRH--------GTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEE--- 177
               A  KR+        G LL+TNGSP    GG  PRIESFS P+V D R+EEK E   
Sbjct: 121 RFRGAMLKRNRKMVVPQQGRLLLTNGSPMVVSGG--PRIESFSSPVVFDLRKEEKMEHDH 180

[Close]

BLAST of Sed0020517 vs. ExPASy TrEMBL
Match: A0A6P3Z979 (uncharacterized protein LOC107407934 OS=Ziziphus jujuba OX=326968 GN=LOC107407934 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 5.4e-35
Identity = 95/186 (51.08%), Postives = 112/186 (60.22%), Query Frame = 0


Query: 1   MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLA 60
           MDW SWLS +GL P + YEYGLAF+HNELE EDI+YFNHEFL S+GISIAKHRL+ILKLA
Sbjct: 1   MDWFSWLSRTGLEPSLVYEYGLAFAHNELEEEDIIYFNHEFLQSMGISIAKHRLEILKLA 60

Query: 61  RSDAAALRRPPLSRRFRLALALAKRRLQDLIRNLTRR--------PPALDGATKALILLP 120
           R +     RP    R  +AL   KR L   +  L  R        P    G      +L 
Sbjct: 61  RKEKGTGPRP--ITRLLVALKKTKRSLAKYVHTLIHREESALVVVPRPSYGTRFRGAMLK 120

Query: 121 RSKKFAPAKRHGTLLITNGSPAPPGGGLWPRIESFSGPIVCDFRREEKEEKGD--CYWGN 177
           R+KK   A +   LL+TNGSP    G   PR+ESFS P+V D  +EEK E+GD   YW  
Sbjct: 121 RNKKLMMANQGNRLLLTNGSPVVVSG---PRLESFSSPLVYDLPKEEKVEEGDDGGYWST 180

[Close]

BLAST of Sed0020517 vs. TAIR 10
Match: AT1G80520.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-26
Identity = 86/205 (41.95%), Postives = 118/205 (57.56%), Query Frame = 0


Query: 1   MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLA 60
           MDW SWLS + L   + YEYGL+FS+NELE+EDI YFNHEFL S+GISIAKHRL+ILKLA
Sbjct: 1   MDWFSWLSRTNLEASLIYEYGLSFSNNELEYEDIAYFNHEFLQSMGISIAKHRLEILKLA 60

Query: 61  RSDAAALRRP-PLSRR--FRLALALAK--RRLQDLIRNLTRRPPALDGATKALILLPRS- 120
           R D    R+P PL+ R  FR+ +A+ K  +   + +R   RR    + +++AL+++ RS 
Sbjct: 61  RRD----RKPSPLTARSIFRVLIAIKKTGKCFSEHVRAWIRR----EESSRALVVVSRST 120

Query: 121 --------------KKFAPAKRHGT----LLITNGSPAPPGGGLWPRIESFSGPIVCDFR 180
                         +   P+  +G     LL+TNG+P         R++SFS P V    
Sbjct: 121 SSSGNGRWKSARKKRLVMPSNGNGVKEERLLLTNGTPC--------RLDSFSNPKV---- 180

[Close]

BLAST of Sed0020517 vs. TAIR 10
Match: AT1G15760.1 (Sterile alpha motif (SAM) domain-containing protein )

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-26
Identity = 81/194 (41.75%), Postives = 109/194 (56.19%), Query Frame = 0


Query: 3   WISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLARS 62
           W SWLS + L P + +EYGL+FS NELEHEDI YF+HEFL S+GISIAKHRL+ILKLAR 
Sbjct: 5   WFSWLSRTNLEPSLIHEYGLSFSQNELEHEDISYFDHEFLQSMGISIAKHRLEILKLARR 64

Query: 63  DAAALRRPPLSRR--FRLALALAKRR--LQDLIRNLTRRPPALDGATKALILLPR----- 122
           D      PPL+ R   R+  A+ K R  L D +R   RR      +++AL+L+P+     
Sbjct: 65  DRK--NSPPLTSRSISRVVTAIKKTRKCLSDHVRAWIRREEE-SASSRALVLVPKKTSNG 124

Query: 123 ------------SKKFAPAKRHG------TLLITNGSPAPPGGGLWPRIESFSGPIVCDF 169
                        +   P+  +G       LL+TNG+P         RI+SFS P+V D+
Sbjct: 125 IGKWRGGFLKRNKRSVMPSNGNGGLEKQERLLLTNGTPC--------RIDSFSSPMVFDY 184

[Close]

BLAST of Sed0020517 vs. TAIR 10
Match: AT2G12462.1 (BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-containing protein (TAIR:AT1G15760.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 6.1e-15
Identity = 49/136 (36.03%), Postives = 73/136 (53.68%), Query Frame = 0


Query: 1   MDWISWLSSSGLHPRVAYEYGLAFSHNELEHEDILYFNHEFLLSLGISIAKHRLQILKLA 60
           MDW SWLS + L P ++YEYGL F+  +L+ EDI  FNH FL  LG+++ KHR++ILKL+
Sbjct: 1   MDWFSWLSKTDLDPTLSYEYGLIFAQKKLQGEDIALFNHNFLRRLGVTVTKHRVEILKLS 60

Query: 61  RSDAAAL----RRPPLSRRFRLALALAKRRLQDLIRNLTRRPPALDGATKALILLPRSKK 120
           + +  AL     RP  ++   + +   K      + N   +  +L G T  +  L   + 
Sbjct: 61  KRETQALSSYNHRPVSAKLISVVIKATKS-----VGNRLNKWLSL-GGTAVVEPLKEKQS 120

Query: 121 FAPAKRHGTLLITNGS 133
             PA R G  L  N +
Sbjct: 121 PPPAYRTGAFLTGNNN 130

The following BLAST results are available for this feature:

BLAST of Sed0020517 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023525324.1	2.5e-42	57.45	uncharacterized protein LOC111788960 [Cucurbita pepo subsp. pepo] >KAG7036525.1 ...	[more]
KAG6606819.1	2.5e-42	57.45	hypothetical protein SDJN03_00161, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022998747.1	3.2e-42	57.14	uncharacterized protein LOC111493318 [Cucurbita maxima]	[more]
XP_022948497.1	2.7e-41	56.91	uncharacterized protein LOC111452156 [Cucurbita moschata]	[more]
XP_038900622.1	3.3e-39	54.30	uncharacterized protein LOC120087790 [Benincasa hispida]	[more]

BLAST of Sed0020517 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020517 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K8U0	1.6e-42	57.14	uncharacterized protein LOC111493318 OS=Cucurbita maxima OX=3661 GN=LOC111493318...	[more]
A0A6J1G9F1	1.3e-41	56.91	uncharacterized protein LOC111452156 OS=Cucurbita moschata OX=3662 GN=LOC1114521...	[more]
A0A6J1DIZ2	6.8e-38	53.76	uncharacterized protein LOC111020921 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
W9RBY4	1.4e-35	51.02	SAM domain-containing protein OS=Morus notabilis OX=981085 GN=L484_025708 PE=4 S...	[more]
A0A6P3Z979	5.4e-35	51.08	uncharacterized protein LOC107407934 OS=Ziziphus jujuba OX=326968 GN=LOC10740793...	[more]

BLAST of Sed0020517 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80520.1	2.6e-26	41.95	Sterile alpha motif (SAM) domain-containing protein	[more]
AT1G15760.1	2.6e-26	41.75	Sterile alpha motif (SAM) domain-containing protein	[more]
AT2G12462.1	6.1e-15	36.03	BEST Arabidopsis thaliana protein match is: Sterile alpha motif (SAM) domain-con...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001660	Sterile alpha motif domain	PFAM	PF07647	SAM_2	coord: 6..58 e-value: 3.1E-4 score: 20.8
IPR013761	Sterile alpha motif/pointed domain superfamily	GENE3D	1.10.150.50		coord: 1..66 e-value: 3.6E-9 score: 38.1
IPR013761	Sterile alpha motif/pointed domain superfamily	SUPERFAMILY	47769	SAM/Pointed domain	coord: 5..61
None	No IPR available	PANTHER	PTHR33915	OSJNBA0033G05.11 PROTEIN	coord: 1..177
None	No IPR available	PANTHER	PTHR33915:SF1	OSJNBA0033G05.11 PROTEIN	coord: 1..177
None	No IPR available	CDD	cd09487	SAM_superfamily	coord: 2..61 e-value: 5.51027E-8 score: 45.6933

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020517.1	Sed0020517.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding