Sed0020498 (gene) Chayote v1

Overview
NameSed0020498
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG06: 19741414 .. 19741758 (-)
RNA-Seq ExpressionSed0020498
SyntenySed0020498
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAAGATGGGAGAGATGGAGAGGAGATTAGTGAAGCTAGGTGGAGAGAAGCTCAATGTGGGGTCATTAATCATTTAACTCAAGTGGTTAATGCCTTAAGCCATAGGTTGGAGCGAATGGAAGTAGCTTTAGGAAATCCTCAAGGGAGGGAGGATAACTTTAATTATGAAGGAGTTGAAAATGAAGATGGAGAAGATAATGTTAACCTCTTAGCGGGATACAATCCACGGGGAGGGAGAGTTTTAGGTCGATGGGGACGAGGAGGAAGAAGAAGGGGTAGGGAAATTATAGCACCTAGAAGGATCGAAAGGGAGAACCAATATGAAAGAGAAGTAGTGTAA

mRNA sequence

ATGAATCAAGATGGGAGAGATGGAGAGGAGATTAGTGAAGCTAGGTGGAGAGAAGCTCAATGTGGGGTCATTAATCATTTAACTCAAGTGGTTAATGCCTTAAGCCATAGGTTGGAGCGAATGGAAGTAGCTTTAGGAAATCCTCAAGGGAGGGAGGATAACTTTAATTATGAAGGAGTTGAAAATGAAGATGGAGAAGATAATGTTAACCTCTTAGCGGGATACAATCCACGGGGAGGGAGAGTTTTAGGTCGATGGGGACGAGGAGGAAGAAGAAGGGGTAGGGAAATTATAGCACCTAGAAGGATCGAAAGGGAGAACCAATATGAAAGAGAAGTAGTGTAA

Coding sequence (CDS)

ATGAATCAAGATGGGAGAGATGGAGAGGAGATTAGTGAAGCTAGGTGGAGAGAAGCTCAATGTGGGGTCATTAATCATTTAACTCAAGTGGTTAATGCCTTAAGCCATAGGTTGGAGCGAATGGAAGTAGCTTTAGGAAATCCTCAAGGGAGGGAGGATAACTTTAATTATGAAGGAGTTGAAAATGAAGATGGAGAAGATAATGTTAACCTCTTAGCGGGATACAATCCACGGGGAGGGAGAGTTTTAGGTCGATGGGGACGAGGAGGAAGAAGAAGGGGTAGGGAAATTATAGCACCTAGAAGGATCGAAAGGGAGAACCAATATGAAAGAGAAGTAGTGTAA

Protein sequence

MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGVENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREIIAPRRIERENQYEREVV
Homology
BLAST of Sed0020498 vs. NCBI nr
Match: XP_023534142.1 (uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 133.3 bits (334), Expect = 1.4e-27
Identity = 77/113 (68.14%), Postives = 92/113 (81.42%), Query Frame = 0

Query: 1   MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGV 60
           MNQDG +G EI+EARWREAQ G I  L QV++ L+ R+ER+E+ALGN QGRE   N EGV
Sbjct: 1   MNQDGGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIEIALGNLQGREVLLN-EGV 60

Query: 61  ENEDGEDNVNLLAGYNPRGGRVLGRWGRGG-RRRGREIIAPRRIERENQYERE 113
           ENE+ +DNV LLAG++PRGGR +GR GRG  RRRGREI+AP+RIERE QYERE
Sbjct: 61  ENEE-DDNVTLLAGHSPRGGRDVGR-GRGRVRRRGREILAPKRIEREYQYERE 110

BLAST of Sed0020498 vs. NCBI nr
Match: XP_022925325.1 (uncharacterized protein LOC111432615 [Cucurbita moschata])

HSP 1 Score: 102.1 bits (253), Expect = 3.3e-18
Identity = 59/98 (60.20%), Postives = 74/98 (75.51%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGV 60
          MNQD  +G EI+EARWREAQ G I  L QV++ L+ R+ER+++ALGN QGRE   N EGV
Sbjct: 1  MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREII 99
          ENE+ +DNV LLAG++PRGGR +GR GRG  RR  E +
Sbjct: 61 ENEE-DDNVTLLAGHSPRGGRDVGR-GRGRVRRREEYL 95

BLAST of Sed0020498 vs. NCBI nr
Match: XP_022929948.1 (uncharacterized protein LOC111436410 [Cucurbita moschata])

HSP 1 Score: 99.8 bits (247), Expect = 1.7e-17
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGV 60
          MNQDG +G EI+EARWREAQ G I  L QV++ L+ R+ER+E+ALGN QGRE   N EGV
Sbjct: 1  MNQDGGNGREINEARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPRGGR 82
          ENE+ +DNV LLAG++PRGGR
Sbjct: 61 ENEE-DDNVTLLAGHSPRGGR 79

BLAST of Sed0020498 vs. NCBI nr
Match: XP_038888883.1 (uncharacterized protein LOC120078660 [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 5.3e-16
Identity = 64/111 (57.66%), Postives = 74/111 (66.67%), Query Frame = 0

Query: 1   MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGV 60
           M+Q   D  E SEAR+REAQ GVI  LT+VV +L  R+ERMEVAL NPQ  E   N E  
Sbjct: 1   MSQGEGDRVETSEARYREAQVGVITRLTKVVKSLIDRVERMEVALRNPQQGEMGCN-EEF 60

Query: 61  ENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREIIAPRRIERENQYER 112
           +NE+ +DN  LL G N RG  VLGR GR GRRR R I+ PR +ERE Q ER
Sbjct: 61  DNEEDDDNETLLVGQNSRGMGVLGR-GR-GRRRERNILQPRMVEREYQNER 108

BLAST of Sed0020498 vs. NCBI nr
Match: KAE8646857.1 (hypothetical protein Csa_020829, partial [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 1.6e-15
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 0

Query: 1   MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGN-PQGREDNFNYEG 60
           MNQ  ++  EISEAR  EAQ G I  LTQV+N L+ RL+R+EVAL N  QG+  N   EG
Sbjct: 1   MNQKTKNSGEISEARRIEAQGGAIVRLTQVINDLTDRLDRIEVALRNRHQGQVLN---EG 60

Query: 61  VENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREIIAPRRIERENQYER 112
           VENE+ EDN  LLA  N RG RVLG+  R  RR GR+++  RR+ERE Q ER
Sbjct: 61  VENEEDEDNETLLAIQNLRGRRVLGQGRRRERREGRDMLPERRVEREYQNER 109

BLAST of Sed0020498 vs. ExPASy TrEMBL
Match: A0A6J1EHL9 (uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC111432615 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.6e-18
Identity = 59/98 (60.20%), Postives = 74/98 (75.51%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGV 60
          MNQD  +G EI+EARWREAQ G I  L QV++ L+ R+ER+++ALGN QGRE   N EGV
Sbjct: 1  MNQDEGNGGEINEARWREAQVGTITRLNQVISTLTDRMERIQIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREII 99
          ENE+ +DNV LLAG++PRGGR +GR GRG  RR  E +
Sbjct: 61 ENEE-DDNVTLLAGHSPRGGRDVGR-GRGRVRRREEYL 95

BLAST of Sed0020498 vs. ExPASy TrEMBL
Match: A0A6J1ETN1 (uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC111436410 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 8.0e-18
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGNPQGREDNFNYEGV 60
          MNQDG +G EI+EARWREAQ G I  L QV++ L+ R+ER+E+ALGN QGRE   N EGV
Sbjct: 1  MNQDGGNGREINEARWREAQVGTITCLNQVISTLTDRMERIEIALGNLQGREVLLN-EGV 60

Query: 61 ENEDGEDNVNLLAGYNPRGGR 82
          ENE+ +DNV LLAG++PRGGR
Sbjct: 61 ENEE-DDNVTLLAGHSPRGGR 79

BLAST of Sed0020498 vs. ExPASy TrEMBL
Match: A0A0A0KC00 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 8.3e-15
Identity = 60/112 (53.57%), Postives = 75/112 (66.96%), Query Frame = 0

Query: 1   MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGN-PQGREDNFNYEG 60
           MN+  ++  +ISEA+  EAQ G I  LTQV+N L++RL+RMEVAL N  QG   N   EG
Sbjct: 1   MNKKAKNDGKISEAKRIEAQGGAIVRLTQVINDLTNRLDRMEVALRNHHQGEVLN---EG 60

Query: 61  VENEDGEDNVNLLAGYNPRGGRVLGRWGRGGRRRGREIIAPRRIERENQYER 112
           VENE+ EDN   LAG NPRG RVLG+  R  RR  R ++  RR+E E+Q ER
Sbjct: 61  VENEEDEDNETFLAGQNPRGRRVLGQGRRRERRDVRGMLPERRVEVEHQNER 109

BLAST of Sed0020498 vs. ExPASy TrEMBL
Match: A0A0A0L0S3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 47/83 (56.63%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 1  MNQDGRDGEEISEARWREAQCGVINHLTQVVNALSHRLERMEVALGN-PQGREDNFNYEG 60
          MNQ  ++  EISEAR  EAQ G I  LTQV+N L+ RL+RM VAL N  QG   N   EG
Sbjct: 1  MNQKAKNDGEISEARRIEAQGGAIVRLTQVINDLTDRLDRMNVALRNRHQGEVLN---EG 60

Query: 61 VENEDGEDNVNLLAGYNPRGGRV 83
          VENE  EDN  LLA  NP   RV
Sbjct: 61 VENEKDEDNETLLARQNPTERRV 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023534142.11.4e-2768.14uncharacterized protein LOC111795765 [Cucurbita pepo subsp. pepo][more]
XP_022925325.13.3e-1860.20uncharacterized protein LOC111432615 [Cucurbita moschata][more]
XP_022929948.11.7e-1765.43uncharacterized protein LOC111436410 [Cucurbita moschata][more]
XP_038888883.15.3e-1657.66uncharacterized protein LOC120078660 [Benincasa hispida][more]
KAE8646857.11.6e-1556.25hypothetical protein Csa_020829, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EHL91.6e-1860.20uncharacterized protein LOC111432615 OS=Cucurbita moschata OX=3662 GN=LOC1114326... [more]
A0A6J1ETN18.0e-1865.43uncharacterized protein LOC111436410 OS=Cucurbita moschata OX=3662 GN=LOC1114364... [more]
A0A0A0KC008.3e-1553.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G235580 PE=4 SV=1[more]
A0A0A0L0S32.0e-0856.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G114220 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0020498.1Sed0020498.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding