Sed0020293 (gene) Chayote v1

Overview


Name	Sed0020293
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Geranylgeranyl pyrophosphate synthase
Location	LG05: 45978647 .. 45979276 (-)
RNA-Seq Expression	Sed0020293
Synteny	Sed0020293

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACGAGTGAACCAAGCATTGGATCAAACCGTGCCTATGAAGCACCCAACAAGAATAACTGAGGCTATGAGATATACATTGCTTGGAAATGACCATGGAGAGCTCTTCCATGCGATAATGTGTCTTGCTTCATGTGAATTGGTGGGTGGAGACGAAGCACAAGCCATGCCGATCGCTTGTGCCCTCGAAATGATTTTCACCATGTTGTTGATGCTTGACGATCTACCTTGCATGGATGACGACGACGTTCGTCGAGGAAAGGCAGCTAGCCACAAGGTTTTCGGCGAAGAAACGACCATTCTAGCTGCAAGTTCACTTTTGTGCCTTGCCTTTCAACATGTAGCCGAAATGAAAAAGAATCATGTCCCATTAGAAAGGGTATTCAGAGGCATTGTTGAGCATGGATGGGCAAGTGGGTTTGATGGGATGCTCGGAGGACAACTGATGGACCTCGATTTCACCGGAAAAGAAGCCAGCCTTGAAGAAGTGGAGTGCATACACATGAGGAAAACTGGGAAACTGGTCGAAGCTGCGGCGGTTTGCGGTGCGATAATGGGAGGAGGAAGAGATAGAGAGCTGAAGAAGATATGGAACACAAATTGGGTTGATGTATCAAGTGGTGAATGA

mRNA sequence

ATGGAACGAGTGAACCAAGCATTGGATCAAACCGTGCCTATGAAGCACCCAACAAGAATAACTGAGGCTATGAGATATACATTGCTTGGAAATGACCATGGAGAGCTCTTCCATGCGATAATGTGTCTTGCTTCATGTGAATTGGTGGGTGGAGACGAAGCACAAGCCATGCCGATCGCTTGTGCCCTCGAAATGATTTTCACCATGTTGTTGATGCTTGACGATCTACCTTGCATGGATGACGACGACGTTCGTCGAGGAAAGGCAGCTAGCCACAAGGTTTTCGGCGAAGAAACGACCATTCTAGCTGCAAGTTCACTTTTGTGCCTTGCCTTTCAACATGTAGCCGAAATGAAAAAGAATCATGTCCCATTAGAAAGGGTATTCAGAGGCATTGTTGAGCATGGATGGGCAAGTGGGTTTGATGGGATGCTCGGAGGACAACTGATGGACCTCGATTTCACCGGAAAAGAAGCCAGCCTTGAAGAAGTGGAGTGCATACACATGAGGAAAACTGGGAAACTGGTCGAAGCTGCGGCGGTTTGCGGTGCGATAATGGGAGGAGGAAGAGATAGAGAGCTGAAGAAGATATGGAACACAAATTGGGTTGATGTATCAAGTGGTGAATGA

Coding sequence (CDS)

ATGGAACGAGTGAACCAAGCATTGGATCAAACCGTGCCTATGAAGCACCCAACAAGAATAACTGAGGCTATGAGATATACATTGCTTGGAAATGACCATGGAGAGCTCTTCCATGCGATAATGTGTCTTGCTTCATGTGAATTGGTGGGTGGAGACGAAGCACAAGCCATGCCGATCGCTTGTGCCCTCGAAATGATTTTCACCATGTTGTTGATGCTTGACGATCTACCTTGCATGGATGACGACGACGTTCGTCGAGGAAAGGCAGCTAGCCACAAGGTTTTCGGCGAAGAAACGACCATTCTAGCTGCAAGTTCACTTTTGTGCCTTGCCTTTCAACATGTAGCCGAAATGAAAAAGAATCATGTCCCATTAGAAAGGGTATTCAGAGGCATTGTTGAGCATGGATGGGCAAGTGGGTTTGATGGGATGCTCGGAGGACAACTGATGGACCTCGATTTCACCGGAAAAGAAGCCAGCCTTGAAGAAGTGGAGTGCATACACATGAGGAAAACTGGGAAACTGGTCGAAGCTGCGGCGGTTTGCGGTGCGATAATGGGAGGAGGAAGAGATAGAGAGCTGAAGAAGATATGGAACACAAATTGGGTTGATGTATCAAGTGGTGAATGA

Protein sequence

MERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIACALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKNHVPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTGKEASLEEVECIHMRKTGKLVEAAAVCGAIMGGGRDRELKKIWNTNWVDVSSGE

Homology

[Close]

BLAST of Sed0020293 vs. NCBI nr
Match: AKQ99276.1 (geranylgeranyl diphosphate synthase 2 [Tripterygium wilfordii])

HSP 1 Score: 230.3 bits (586), Expect = 1.5e-56
Identity = 113/196 (57.65%), Postives = 149/196 (76.02%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           +RVN+ALD+ VP+K P +I EAMRY+LLG   G+    ++C+ASCELVGGDEA AMPIAC
Sbjct: 233 KRVNRALDEAVPLKTPKKICEAMRYSLLGG--GKRIRPVLCIASCELVGGDEASAMPIAC 292

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
            +E+I T  L++DDLPCMD+DD+RRG   +HK+FGEE  ILA+++L CLAF+HV    KN
Sbjct: 293 TMEIIHTCSLIIDDLPCMDNDDLRRGNLTNHKLFGEEVAILASAALFCLAFEHVVSKTKN 352

Query: 122 HVPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTGKEASLEEVECIHMRKTGKLVEAAAV 181
            VP +RV R I+E G A G DG++ GQ  DL+  GKE SLEE+E IH+ KT +L+EA+ V
Sbjct: 353 -VPPDRVVRVIMEIGSAIGTDGLVAGQFGDLECEGKEISLEELEYIHVHKTARLLEASIV 412

Query: 182 CGAIMGGGRDRELKKI 198
           CGAIMGGG   E++++
Sbjct: 413 CGAIMGGGNVSEVERL 425

[Close]

BLAST of Sed0020293 vs. NCBI nr
Match: XP_038683645.1 (geranylgeranyl pyrophosphate synthase, chloroplastic-like [Tripterygium wilfordii])

HSP 1 Score: 229.9 bits (585), Expect = 1.9e-56
Identity = 113/196 (57.65%), Postives = 149/196 (76.02%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           +RVN+ALD+ VP+K P +I EAMRY+LLG   G+    ++C+ASCELVGGDEA AMPIAC
Sbjct: 247 KRVNRALDEAVPLKTPKKICEAMRYSLLGG--GKRIRPMLCIASCELVGGDEASAMPIAC 306

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
            +E+I T  L++DDLPCMD+DD+RRG   +HK+FGEE  ILA+++L CLAF+HV    KN
Sbjct: 307 TIEIIHTCSLIIDDLPCMDNDDLRRGNLTNHKLFGEEVAILASAALFCLAFEHVVSKTKN 366

Query: 122 HVPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTGKEASLEEVECIHMRKTGKLVEAAAV 181
            VP +RV R I+E G A G DG++ GQ  DL+  GKE SLEE+E IH+ KT +L+EA+ V
Sbjct: 367 -VPPDRVVRVIMEMGSAIGTDGLVAGQFGDLECEGKELSLEELEYIHVHKTARLLEASIV 426

Query: 182 CGAIMGGGRDRELKKI 198
           CGAIMGGG   E++++
Sbjct: 427 CGAIMGGGNVSEVERL 439

[Close]

BLAST of Sed0020293 vs. NCBI nr
Match: KAF6143954.1 (hypothetical protein GIB67_017562 [Kingdonia uniflora])

HSP 1 Score: 229.6 bits (584), Expect = 2.5e-56
Identity = 111/195 (56.92%), Postives = 145/195 (74.36%), Query Frame = 0


Query: 3   RVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIACA 62
           RVN+ALD+ +P++HP +I EAMRY+LL    G+    ++C+A+CELVGGDEA A+P+ACA
Sbjct: 71  RVNEALDEAIPLRHPLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGDEASALPVACA 130

Query: 63  LEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKNH 122
           LEMI TM L+ DDLPCMDDDD RRGK  +HK FGEET +LA  +LL LAF+HVA  + N+
Sbjct: 131 LEMIHTMSLIHDDLPCMDDDDFRRGKPTNHKAFGEETAVLAGDALLSLAFEHVA-TRTNN 190

Query: 123 VPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTGKEASLEEVECIHMRKTGKLVEAAAVC 182
           V  +RV R I E G A G DG++GGQ++DL   GK   L  +E IH+ KT KL+EAA VC
Sbjct: 191 VSADRVVRAIAELGSAVGSDGLVGGQIVDLTSEGKHVDLNALEYIHVHKTSKLLEAAVVC 250

Query: 183 GAIMGGGRDRELKKI 198
           G IMGGGR  +++++
Sbjct: 251 GVIMGGGRVVDIERV 262

[Close]

BLAST of Sed0020293 vs. NCBI nr
Match: XP_038683646.1 (geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [Tripterygium wilfordii])

HSP 1 Score: 229.2 bits (583), Expect = 3.3e-56
Identity = 113/197 (57.36%), Postives = 150/197 (76.14%), Query Frame = 0


Query: 1   MERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIA 60
           ++RVN+ALD+ VP+K P +I EAMRY+LLG   G+    I+C+ASCELVGGDEA AMPIA
Sbjct: 232 LKRVNRALDEAVPLKTPKKICEAMRYSLLGG--GKRIRPILCIASCELVGGDEASAMPIA 291

Query: 61  CALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKK 120
           CA+E+I T  L++DDLPCMD+DD+RRG   +HK+FGEE  ILA+++L CLAF+HV    K
Sbjct: 292 CAMEIIHTCSLIIDDLPCMDNDDLRRGNLTNHKLFGEEVAILASTALFCLAFEHVVSKTK 351

Query: 121 NHVPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTGKEASLEEVECIHMRKTGKLVEAAA 180
           N VP +RV R I+E G A G DG++ GQ  DL+  GKE SLEE+E IH+ KT +L+EA+ 
Sbjct: 352 N-VPPDRVVRVIMEIGSAIGTDGLVAGQFGDLECEGKELSLEELEYIHVHKTARLLEASI 411

Query: 181 VCGAIMGGGRDRELKKI 198
           VCGAI+ GG   E++++
Sbjct: 412 VCGAIIAGGNVSEVERL 425

[Close]

BLAST of Sed0020293 vs. NCBI nr
Match: XP_006482126.1 (geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [Citrus sinensis])

HSP 1 Score: 228.8 bits (582), Expect = 4.3e-56
Identity = 112/196 (57.14%), Postives = 148/196 (75.51%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           +RVN+ALD+TV ++HP +I EAMRY+LL    G+    ++C+ASCELVGGDE+ AMP+AC
Sbjct: 83  KRVNKALDETVQLRHPAKIHEAMRYSLLAG--GKRVRPVLCIASCELVGGDESSAMPVAC 142

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
           ALEMI TM L+ DDLPCMD+DD RRGK  +HKVFGE+T ILA  +LL LAF+HVA  K  
Sbjct: 143 ALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVA-AKST 202

Query: 122 HVPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTGKEASLEEVECIHMRKTGKLVEAAAV 181
            +  +RV R I E G A G +G++ G++MD+D  GK+ SL E+E IH+ KT KL+EAA V
Sbjct: 203 EISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVV 262

Query: 182 CGAIMGGGRDRELKKI 198
           CGAI+GGG   E++++
Sbjct: 263 CGAIIGGGNMIEVERV 275

[Close]

BLAST of Sed0020293 vs. ExPASy Swiss-Prot
Match: P34802 (Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGPPS1 PE=1 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 2.7e-48
Identity = 99/201 (49.25%), Postives = 140/201 (69.65%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           E VN+ALD  VP++ P +I EAMRY+LL    G+    ++C+A+CELVGG+E+ AMP AC
Sbjct: 85  ELVNKALDSAVPLREPLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGEESTAMPAAC 144

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
           A+EMI TM L+ DDLPCMD+DD+RRGK  +HKVFGE+  +LA  +LL  AF+H+A    +
Sbjct: 145 AVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSS 204

Query: 122 HV--PLERVFRGIVEHGWASGFDGMLGGQLMDLDFTG---KEASLEEVECIHMRKTGKLV 181
            V  P+ RV R + E   A G +G++ GQ++D+   G    +  LE +E IH+ KT  L+
Sbjct: 205 DVVSPV-RVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALL 264

Query: 182 EAAAVCGAIMGGGRDRELKKI 198
           EA+AV GAI+GGG D E++++
Sbjct: 265 EASAVLGAIVGGGSDDEIERL 282

[Close]

BLAST of Sed0020293 vs. ExPASy Swiss-Prot
Match: Q94ID7 (Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=3981 GN=GGPS PE=1 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 7.7e-48
Identity = 95/195 (48.72%), Postives = 136/195 (69.74%), Query Frame = 0


Query: 4   VNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIACAL 63
           +NQAL+  +P++ P +I E+MRY+LL    G+     +CLA+CELVGG+++ AMP ACA+
Sbjct: 90  INQALEAAIPLQEPAKIHESMRYSLLAG--GKRVRPALCLAACELVGGNDSMAMPAACAV 149

Query: 64  EMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKNHV 123
           EMI TM L+ DDLPCMD+DD+RRGK  +H VFGE+  +LA  +LL  AF+H+A    N V
Sbjct: 150 EMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLN-V 209

Query: 124 PLERVFRGIVEHGWASGFDGMLGGQLMDLDFTG-KEASLEEVECIHMRKTGKLVEAAAVC 183
              R+ R + E   A G +G++ GQ++D++  G  E  LE++E IH+ KT KL+E A V 
Sbjct: 210 SSARIVRAVGELAKAIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVL 269

Query: 184 GAIMGGGRDRELKKI 198
           GAI+GGG D E++K+
Sbjct: 270 GAILGGGTDEEVEKL 281

[Close]

BLAST of Sed0020293 vs. ExPASy Swiss-Prot
Match: Q43133 (Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis alba OX=3728 GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-47
Identity = 93/199 (46.73%), Postives = 135/199 (67.84%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           + VN+ALD  VP++ P +I EAMRY+LL    G+    ++C+A+CELVGG+E+ AMP  C
Sbjct: 81  DSVNKALDSAVPLREPLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGEESLAMPARC 140

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
           A+EMI TM L+ DDLPCMD+DD+RRGK  +HKV+GE+  +LA  +LL  AF+H+A    +
Sbjct: 141 AVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSS 200

Query: 122 HVPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTG---KEASLEEVECIHMRKTGKLVEA 181
            V   RV R + E   A G +G++ GQ++D+   G       LE ++ IH+ KT  L+EA
Sbjct: 201 EVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEA 260

Query: 182 AAVCGAIMGGGRDRELKKI 198
           +AV G I+GGG D E++++
Sbjct: 261 SAVLGGIIGGGSDEEIERL 277

[Close]

BLAST of Sed0020293 vs. ExPASy Swiss-Prot
Match: Q9LUD9 (Geranylgeranyl pyrophosphate synthase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGPP3 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.1e-46
Identity = 96/199 (48.24%), Postives = 132/199 (66.33%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           E VN ALD +VP++ P  + EA+RY+LL    G+    ++C+A CELVGGDEA AM  AC
Sbjct: 75  ESVNAALDVSVPLREPLTVQEAVRYSLLAG--GKRVRPLLCIAVCELVGGDEATAMSAAC 134

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
           A+EMI T  L+ DDLPCMD+ D+RRGK  +HKV+GE+  +LA  +LL LAF+H+  +   
Sbjct: 135 AVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSG 194

Query: 122 HVPLERVFRGIVEHGWASGFDGMLGGQLMDL---DFTGKEASLEEVECIHMRKTGKLVEA 181
            V  ER+ R +VE   A G  G++ GQ++DL        +  LE +E IH+ KT  L+EA
Sbjct: 195 LVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEA 254

Query: 182 AAVCGAIMGGGRDRELKKI 198
           AAV G IMGGG + E++K+
Sbjct: 255 AAVLGVIMGGGTEEEIEKL 271

[Close]

BLAST of Sed0020293 vs. ExPASy Swiss-Prot
Match: Q9LRR0 (Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g14510 PE=5 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 1.9e-46
Identity = 98/200 (49.00%), Postives = 132/200 (66.00%), Query Frame = 0


Query: 2   ERVNQALD-QTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIA 61
           E VN ALD   VP++ P  + EA+RY+LL    G+    ++C+A CELVGGDEA AM  A
Sbjct: 75  ESVNAALDVSIVPLREPLTVQEAVRYSLLAG--GKRVRPLLCIAVCELVGGDEATAMSAA 134

Query: 62  CALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKK 121
           CA+EMI T  L+ DDLPCMD+ D+RRGK  +HKVFGE+  +LA  +LL LAF+H+  +  
Sbjct: 135 CAVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVFGEDMAVLAGDALLALAFEHMTVVSS 194

Query: 122 NHVPLERVFRGIVEHGWASGFDGMLGGQLMDLD---FTGKEASLEEVECIHMRKTGKLVE 181
             V  ER+ R +VE   A G  G++ GQ++DL        +  LE +E IH+ KT  L+E
Sbjct: 195 GLVASERMIRAVVELARAIGTKGLVAGQVVDLSSERLNPHDVGLERLEFIHLHKTAALLE 254

Query: 182 AAAVCGAIMGGGRDRELKKI 198
           AAAV GAIMGGG + E++K+
Sbjct: 255 AAAVIGAIMGGGTEEEIEKL 272

[Close]

BLAST of Sed0020293 vs. ExPASy TrEMBL
Match: A0A1D6X8X5 (Geranylgeranyl diphosphate synthase 2 OS=Tripterygium wilfordii OX=458696 GN=GGPPS2 PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 7.2e-57
Identity = 113/196 (57.65%), Postives = 149/196 (76.02%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           +RVN+ALD+ VP+K P +I EAMRY+LLG   G+    ++C+ASCELVGGDEA AMPIAC
Sbjct: 233 KRVNRALDEAVPLKTPKKICEAMRYSLLGG--GKRIRPVLCIASCELVGGDEASAMPIAC 292

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
            +E+I T  L++DDLPCMD+DD+RRG   +HK+FGEE  ILA+++L CLAF+HV    KN
Sbjct: 293 TMEIIHTCSLIIDDLPCMDNDDLRRGNLTNHKLFGEEVAILASAALFCLAFEHVVSKTKN 352

Query: 122 HVPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTGKEASLEEVECIHMRKTGKLVEAAAV 181
            VP +RV R I+E G A G DG++ GQ  DL+  GKE SLEE+E IH+ KT +L+EA+ V
Sbjct: 353 -VPPDRVVRVIMEIGSAIGTDGLVAGQFGDLECEGKEISLEELEYIHVHKTARLLEASIV 412

Query: 182 CGAIMGGGRDRELKKI 198
           CGAIMGGG   E++++
Sbjct: 413 CGAIMGGGNVSEVERL 425

[Close]

BLAST of Sed0020293 vs. ExPASy TrEMBL
Match: A0A7J7LN87 (Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_017562 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 1.2e-56
Identity = 111/195 (56.92%), Postives = 145/195 (74.36%), Query Frame = 0


Query: 3   RVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIACA 62
           RVN+ALD+ +P++HP +I EAMRY+LL    G+    ++C+A+CELVGGDEA A+P+ACA
Sbjct: 71  RVNEALDEAIPLRHPLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGDEASALPVACA 130

Query: 63  LEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKNH 122
           LEMI TM L+ DDLPCMDDDD RRGK  +HK FGEET +LA  +LL LAF+HVA  + N+
Sbjct: 131 LEMIHTMSLIHDDLPCMDDDDFRRGKPTNHKAFGEETAVLAGDALLSLAFEHVA-TRTNN 190

Query: 123 VPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTGKEASLEEVECIHMRKTGKLVEAAAVC 182
           V  +RV R I E G A G DG++GGQ++DL   GK   L  +E IH+ KT KL+EAA VC
Sbjct: 191 VSADRVVRAIAELGSAVGSDGLVGGQIVDLTSEGKHVDLNALEYIHVHKTSKLLEAAVVC 250

Query: 183 GAIMGGGRDRELKKI 198
           G IMGGGR  +++++
Sbjct: 251 GVIMGGGRVVDIERV 262

[Close]

BLAST of Sed0020293 vs. ExPASy TrEMBL
Match: A0A1R3GBT7 (Polyprenyl synthetase OS=Corchorus capsularis OX=210143 GN=CCACVL1_27223 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 2.1e-56
Identity = 113/196 (57.65%), Postives = 149/196 (76.02%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           ++VNQAL + +P+KHP  I EAMRY+LL    G+    I+C+ASCELVGGDEA AMP+AC
Sbjct: 85  KQVNQALIKAIPLKHPIAIHEAMRYSLLAG--GKRVRPILCIASCELVGGDEAVAMPMAC 144

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
           A+EMI TM L+ DDLPCMD+DD+RRGK  +HKVFGEET ILA  +LL LAF+HVAE   N
Sbjct: 145 AMEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEETAILAGDALLSLAFEHVAE-NTN 204

Query: 122 HVPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTGKEASLEEVECIHMRKTGKLVEAAAV 181
           +V  +RV R I E G A G +G++ GQ++D+   GKE SL+E+E IH+ KT KL+EA+ V
Sbjct: 205 YVSADRVVRAIAELGSAVGSEGLVAGQIVDIKSEGKEVSLKELEFIHLHKTAKLLEASVV 264

Query: 182 CGAIMGGGRDRELKKI 198
           CGAI+GG  D +++++
Sbjct: 265 CGAIVGGANDGDVERV 277

[Close]

BLAST of Sed0020293 vs. ExPASy TrEMBL
Match: A0A2H5NUF2 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_076950 PE=3 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 2.1e-56
Identity = 112/196 (57.14%), Postives = 148/196 (75.51%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           +RVN+ALD+TV ++HP +I EAMRY+LL    G+    ++C+ASCELVGGDE+ AMP+AC
Sbjct: 83  KRVNKALDETVQLRHPAKIHEAMRYSLLAG--GKRVRPVLCIASCELVGGDESSAMPVAC 142

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
           ALEMI TM L+ DDLPCMD+DD RRGK  +HKVFGE+T ILA  +LL LAF+HVA  K  
Sbjct: 143 ALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAILAGDALLSLAFEHVA-AKST 202

Query: 122 HVPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTGKEASLEEVECIHMRKTGKLVEAAAV 181
            +  +RV R I E G A G +G++ G++MD+D  GK+ SL E+E IH+ KT KL+EAA V
Sbjct: 203 EISPDRVVRAIAELGSAVGSEGLVAGEIMDIDSEGKDVSLNELENIHLHKTAKLLEAAVV 262

Query: 182 CGAIMGGGRDRELKKI 198
           CGAI+GGG   E++++
Sbjct: 263 CGAIIGGGNMIEVERV 275

[Close]

BLAST of Sed0020293 vs. ExPASy TrEMBL
Match: A0A061EH03 (Geranylgeranyl pyrophosphate synthase 1 OS=Theobroma cacao OX=3641 GN=TCM_019156 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 4.7e-56
Identity = 111/198 (56.06%), Postives = 148/198 (74.75%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           +RVN+AL + VP+KHP +I EAMRY+LL    G+    I+C+A+CELVGG+E  AMP+AC
Sbjct: 79  QRVNKALIKAVPLKHPMQIHEAMRYSLLAG--GKRVRPILCIAACELVGGEETLAMPVAC 138

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
           A+EMI TM L+ DDLPCMD+DD+RRGK  +HKVFGEET ILA  +LL LAF+H+A     
Sbjct: 139 AVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEETAILAGDALLSLAFEHLASKTTE 198

Query: 122 HVPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTGKEASLEEVECIHMRKTGKLVEAAAV 181
           ++  +RV R I E G A G +G++GGQ++DL   GKE SL E+E IH+ KT KL+EA+ V
Sbjct: 199 NISPDRVVRAIAELGSAVGSEGLVGGQIVDLASEGKEISLNELEYIHLHKTAKLLEASVV 258

Query: 182 CGAIMGGGRDRELKKIWN 200
           CGAI+GGG D ++ ++ N
Sbjct: 259 CGAIIGGGNDGDVVRVRN 274

[Close]

BLAST of Sed0020293 vs. TAIR 10
Match: AT4G36810.1 (geranylgeranyl pyrophosphate synthase 1 )

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-49
Identity = 99/201 (49.25%), Postives = 140/201 (69.65%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           E VN+ALD  VP++ P +I EAMRY+LL    G+    ++C+A+CELVGG+E+ AMP AC
Sbjct: 85  ELVNKALDSAVPLREPLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGEESTAMPAAC 144

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
           A+EMI TM L+ DDLPCMD+DD+RRGK  +HKVFGE+  +LA  +LL  AF+H+A    +
Sbjct: 145 AVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSS 204

Query: 122 HV--PLERVFRGIVEHGWASGFDGMLGGQLMDLDFTG---KEASLEEVECIHMRKTGKLV 181
            V  P+ RV R + E   A G +G++ GQ++D+   G    +  LE +E IH+ KT  L+
Sbjct: 205 DVVSPV-RVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALL 264

Query: 182 EAAAVCGAIMGGGRDRELKKI 198
           EA+AV GAI+GGG D E++++
Sbjct: 265 EASAVLGAIVGGGSDDEIERL 282

[Close]

BLAST of Sed0020293 vs. TAIR 10
Match: AT3G14550.1 (geranylgeranyl pyrophosphate synthase 3 )

HSP 1 Score: 187.6 bits (475), Expect = 1.0e-47
Identity = 96/199 (48.24%), Postives = 132/199 (66.33%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           E VN ALD +VP++ P  + EA+RY+LL    G+    ++C+A CELVGGDEA AM  AC
Sbjct: 75  ESVNAALDVSVPLREPLTVQEAVRYSLLAG--GKRVRPLLCIAVCELVGGDEATAMSAAC 134

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
           A+EMI T  L+ DDLPCMD+ D+RRGK  +HKV+GE+  +LA  +LL LAF+H+  +   
Sbjct: 135 AVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTFVSSG 194

Query: 122 HVPLERVFRGIVEHGWASGFDGMLGGQLMDL---DFTGKEASLEEVECIHMRKTGKLVEA 181
            V  ER+ R +VE   A G  G++ GQ++DL        +  LE +E IH+ KT  L+EA
Sbjct: 195 LVAPERMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEA 254

Query: 182 AAVCGAIMGGGRDRELKKI 198
           AAV G IMGGG + E++K+
Sbjct: 255 AAVLGVIMGGGTEEEIEKL 271

[Close]

BLAST of Sed0020293 vs. TAIR 10
Match: AT3G14530.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-47
Identity = 96/199 (48.24%), Postives = 133/199 (66.83%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           E VN ALD +VP+  P  I EA+RY+LL    G+    ++C+A+CELVGGDEA AM  AC
Sbjct: 75  ESVNAALDVSVPLLKPLTIQEAVRYSLLAG--GKRVRPLLCIAACELVGGDEATAMSAAC 134

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
           A+EMI T  L+ DDLPCMD+ D+RRGK  +HKV+GE+  +LA  +LL LAF+H+  +   
Sbjct: 135 AVEMIHTSSLIHDDLPCMDNADLRRGKPTNHKVYGEDMAVLAGDALLALAFEHMTVVSSG 194

Query: 122 HVPLERVFRGIVEHGWASGFDGMLGGQLMDL---DFTGKEASLEEVECIHMRKTGKLVEA 181
            V  E++ R +VE   A G  G++ GQ++DL        +  LE +E IH+ KT  L+EA
Sbjct: 195 LVAPEKMIRAVVELARAIGTTGLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEA 254

Query: 182 AAVCGAIMGGGRDRELKKI 198
           AAV G IMGGG ++E++K+
Sbjct: 255 AAVLGVIMGGGTEQEIEKL 271

[Close]

BLAST of Sed0020293 vs. TAIR 10
Match: AT3G29430.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 186.8 bits (473), Expect = 1.8e-47
Identity = 97/199 (48.74%), Postives = 133/199 (66.83%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           E V+ AL+ +VP++ P  I EA+RY+LL    G+    ++C+A+CELVGGDEA AM  AC
Sbjct: 72  ESVSAALNVSVPLQEPLTIQEAVRYSLLAG--GKRVRPLLCIAACELVGGDEATAMSAAC 131

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
           A+EMI T  L+ DDLPCMDD D+RRGK  +HK FGE+  +LA  +LL LAF+H+  +   
Sbjct: 132 AVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKEFGEDMAVLAGDALLALAFEHMTFVSNG 191

Query: 122 HVPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTG---KEASLEEVECIHMRKTGKLVEA 181
            V  ER+ R ++E   A G  G++ GQ+ DL   G    +  LE +E IH+ KT  L+EA
Sbjct: 192 LVAPERMIRAVMELAKAIGTKGLVAGQVTDLCSQGLNPDDVGLERLEFIHLHKTAALLEA 251

Query: 182 AAVCGAIMGGGRDRELKKI 198
           AAV GAIMGGG + E++K+
Sbjct: 252 AAVLGAIMGGGTEEEIEKL 268

[Close]

BLAST of Sed0020293 vs. TAIR 10
Match: AT2G18640.1 (geranylgeranyl pyrophosphate synthase 4 )

HSP 1 Score: 186.0 bits (471), Expect = 3.0e-47
Identity = 95/201 (47.26%), Postives = 135/201 (67.16%), Query Frame = 0


Query: 2   ERVNQALDQTVPMKHPTRITEAMRYTLLGNDHGELFHAIMCLASCELVGGDEAQAMPIAC 61
           E +N+ALD+ +P+  P  I +AMRY +L    G+    I+CLA+CELVGG+E  A+  AC
Sbjct: 90  ETINRALDEAIPLIEPLNIHKAMRYAILAG--GKRVRPILCLAACELVGGEERLAIQAAC 149

Query: 62  ALEMIFTMLLMLDDLPCMDDDDVRRGKAASHKVFGEETTILAASSLLCLAFQHVAEMKKN 121
           A+EMI TM L+ DDLPCMD+DD+RRGK  +HKVFGE   IL+  +LL LAF+H+ E    
Sbjct: 150 AVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAILSGGALLALAFEHLTEA--- 209

Query: 122 HVPLERVFRGIVEHGWASGFDGMLGGQLMDLDFTGKE---ASLEEVECIHMRKTGKLVEA 181
            V  +++ R + E   + G  G++ GQ  DL   G E     LE++E IH+ KTG L+EA
Sbjct: 210 DVSSKKMVRAVKELAKSIGTKGLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEA 269

Query: 182 AAVCGAIMGGGRDRELKKIWN 200
           +AV GA++GGG ++E++K+ N
Sbjct: 270 SAVIGAVIGGGTEKEIEKVRN 285

The following BLAST results are available for this feature:

BLAST of Sed0020293 vs. NCBI nr


Match Name	E-value	Identity	Description
AKQ99276.1	1.5e-56	57.65	geranylgeranyl diphosphate synthase 2 [Tripterygium wilfordii]	[more]
XP_038683645.1	1.9e-56	57.65	geranylgeranyl pyrophosphate synthase, chloroplastic-like [Tripterygium wilfordi...	[more]
KAF6143954.1	2.5e-56	56.92	hypothetical protein GIB67_017562 [Kingdonia uniflora]	[more]
XP_038683646.1	3.3e-56	57.36	geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [Tripterygium wilfor...	[more]
XP_006482126.1	4.3e-56	57.14	geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [Citrus sinensis]	[more]

BLAST of Sed0020293 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P34802	2.7e-48	49.25	Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplast...	[more]
Q94ID7	7.7e-48	48.72	Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=39...	[more]
Q43133	1.0e-47	46.73	Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis al...	[more]
Q9LUD9	1.1e-46	48.24	Geranylgeranyl pyrophosphate synthase 3, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9LRR0	1.9e-46	49.00	Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic OS=Arabidopsis t...	[more]

BLAST of Sed0020293 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1D6X8X5	7.2e-57	57.65	Geranylgeranyl diphosphate synthase 2 OS=Tripterygium wilfordii OX=458696 GN=GGP...	[more]
A0A7J7LN87	1.2e-56	56.92	Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_017562 PE=3 SV=1	[more]
A0A1R3GBT7	2.1e-56	57.65	Polyprenyl synthetase OS=Corchorus capsularis OX=210143 GN=CCACVL1_27223 PE=3 SV...	[more]
A0A2H5NUF2	2.1e-56	57.14	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_076950 PE=3 SV=1	[more]
A0A061EH03	4.7e-56	56.06	Geranylgeranyl pyrophosphate synthase 1 OS=Theobroma cacao OX=3641 GN=TCM_019156...	[more]

BLAST of Sed0020293 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G36810.1	1.9e-49	49.25	geranylgeranyl pyrophosphate synthase 1	[more]
AT3G14550.1	1.0e-47	48.24	geranylgeranyl pyrophosphate synthase 3	[more]
AT3G14530.1	1.8e-47	48.24	Terpenoid synthases superfamily protein	[more]
AT3G29430.1	1.8e-47	48.74	Terpenoid synthases superfamily protein	[more]
AT2G18640.1	3.0e-47	47.26	geranylgeranyl pyrophosphate synthase 4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 1..200 e-value: 6.0E-57 score: 194.9
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 4..196
IPR000092	Polyprenyl synthetase	PFAM	PF00348	polyprenyl_synt	coord: 20..196 e-value: 4.2E-24 score: 85.0
None	No IPR available	PANTHER	PTHR43281	FARNESYL DIPHOSPHATE SYNTHASE	coord: 2..197
IPR033749	Polyprenyl synthetase, conserved site	PROSITE	PS00723	POLYPRENYL_SYNTHASE_1	coord: 71..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020293.1	Sed0020293.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008299	isoprenoid biosynthetic process
molecular_function	GO:0004659	prenyltransferase activity