Sed0020262 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTAAGTTTGCATTTAAGACCCTCACGACTCTTTTATTTTGCTTCTTGGGGCCTGGTTTCAATTTCGACCCCAAAAAGAATTAAAAACAGAGGTGGAATTCATCACAATCTTTGAAGAAACTCACGAGATCTCCATGGCCAAAGGTAATAATCCCAATTCATAATCCCATTTATTTACATTTCTCCCCCAAACGGGTTCATTTCTCGTACACGAATTTGTGTTTTTCTTCATTCAAAATTGAGAGATTTTTTTTTTTTTTTTTTTTTTATTGAATTGAAAAAATGAGTATTTTCGGTGTGATTTTACAGGAAGCTGCCAGGCAAGAAAGGGAAGATAGAACAATTTGGGGATTTTTGAGCGATCAAATGGACGGCGTCGATGGAGGGAGACGGCGGCGGAGTTTGAAGCAACGGCTAGGATTTAAAGTAATGGGCTGTTGTGGAGCTTCTTGGGGTTTCCGGCCGGCAGGCGGCGGGGACGGCGACGCCGACTCCGCCGCCGACGATATAAGATTACCGGACGGGGAGGTGATGAACACGCGCCATTTACCGGAGGAGGATCGGAGTTGCTTAAGTCCAGTTTCGTCGCCGGCGCCGTCGCCGTCTGGTATGAACTTAGCCACCGCGCTGGCGGCGGAGCGGCGGCTGAGAGCGTCGCCACGTGGACCGGAAAGGGATTTTGTAGAAACAAACAACGAGTTCGAATCACCGGCCGGAACGCCGTTGAGGGTGTCGCTGATGCGGCTGCTGGAAGAAACCCACGGCGGAGGCGGAGGCGGTGGCGGGGATTTGGGAGTGGCGGGAAATGAGTCGGTGTGCTGCGTGTGCATGGGAAGGAAAAAGGGAGCGGCATTTATTCCGTGTGGGCACACGTTTTGTAGGGTGTGTTCGAGGGAGCTGTGGCTGAATCGCGGATCTTGCCCGCTTTGCAACCGTCCGATCCTCGAGATTCTTGATATATTTTGAAGGTGCACGGCAAGTGTGATGGGGGTGAGAACAGAGGATTTGTTGAACTGCTCTTTTGCCTCAACAATCGTGACAGACTGTTTTCATTGGACGGTACTGAACGATGCCGTATTTGAACGACATGTGGATGCGGGTGACAGAACTCTTTACGTCCGAGAAAAAACGTTAAATTAATAATTTCGATGTAATTTTTATATACATGGGATTGAACAACTGCTACTTTGATGGTTGGGTTTTTCTAAAAGAAATAGTTGTATATTGGTTTTTTATTTTATTTTTTGTGTGGTCC ATTAAGTTTGCATTTAAGACCCTCACGACTCTTTTATTTTGCTTCTTGGGGCCTGGTTTCAATTTCGACCCCAAAAAGAATTAAAAACAGAGGTGGAATTCATCACAATCTTTGAAGAAACTCACGAGATCTCCATGGCCAAAGGAAGCTGCCAGGCAAGAAAGGGAAGATAGAACAATTTGGGGATTTTTGAGCGATCAAATGGACGGCGTCGATGGAGGGAGACGGCGGCGGAGTTTGAAGCAACGGCTAGGATTTAAAGTAATGGGCTGTTGTGGAGCTTCTTGGGGTTTCCGGCCGGCAGGCGGCGGGGACGGCGACGCCGACTCCGCCGCCGACGATATAAGATTACCGGACGGGGAGGTGATGAACACGCGCCATTTACCGGAGGAGGATCGGAGTTGCTTAAGTCCAGTTTCGTCGCCGGCGCCGTCGCCGTCTGGTATGAACTTAGCCACCGCGCTGGCGGCGGAGCGGCGGCTGAGAGCGTCGCCACGTGGACCGGAAAGGGATTTTGTAGAAACAAACAACGAGTTCGAATCACCGGCCGGAACGCCGTTGAGGGTGTCGCTGATGCGGCTGCTGGAAGAAACCCACGGCGGAGGCGGAGGCGGTGGCGGGGATTTGGGAGTGGCGGGAAATGAGTCGGTGTGCTGCGTGTGCATGGGAAGGAAAAAGGGAGCGGCATTTATTCCGTGTGGGCACACGTTTTGTAGGGTGTGTTCGAGGGAGCTGTGGCTGAATCGCGGATCTTGCCCGCTTTGCAACCGTCCGATCCTCGAGATTCTTGATATATTTTGAAGGTGCACGGCAAGTGTGATGGGGGTGAGAACAGAGGATTTGTTGAACTGCTCTTTTGCCTCAACAATCGTGACAGACTGTTTTCATTGGACGGTACTGAACGATGCCGTATTTGAACGACATGTGGATGCGGGTGACAGAACTCTTTACGTCCGAGAAAAAACGTTAAATTAATAATTTCGATGTAATTTTTATATACATGGGATTGAACAACTGCTACTTTGATGGTTGGGTTTTTCTAAAAGAAATAGTTGTATATTGGTTTTTTATTTTATTTTTTGTGTGGTCC ATGGACGGCGTCGATGGAGGGAGACGGCGGCGGAGTTTGAAGCAACGGCTAGGATTTAAAGTAATGGGCTGTTGTGGAGCTTCTTGGGGTTTCCGGCCGGCAGGCGGCGGGGACGGCGACGCCGACTCCGCCGCCGACGATATAAGATTACCGGACGGGGAGGTGATGAACACGCGCCATTTACCGGAGGAGGATCGGAGTTGCTTAAGTCCAGTTTCGTCGCCGGCGCCGTCGCCGTCTGGTATGAACTTAGCCACCGCGCTGGCGGCGGAGCGGCGGCTGAGAGCGTCGCCACGTGGACCGGAAAGGGATTTTGTAGAAACAAACAACGAGTTCGAATCACCGGCCGGAACGCCGTTGAGGGTGTCGCTGATGCGGCTGCTGGAAGAAACCCACGGCGGAGGCGGAGGCGGTGGCGGGGATTTGGGAGTGGCGGGAAATGAGTCGGTGTGCTGCGTGTGCATGGGAAGGAAAAAGGGAGCGGCATTTATTCCGTGTGGGCACACGTTTTGTAGGGTGTGTTCGAGGGAGCTGTGGCTGAATCGCGGATCTTGCCCGCTTTGCAACCGTCCGATCCTCGAGATTCTTGATATATTTTGA MDGVDGGRRRRSLKQRLGFKVMGCCGASWGFRPAGGGDGDADSAADDIRLPDGEVMNTRHLPEEDRSCLSPVSSPAPSPSGMNLATALAAERRLRASPRGPERDFVETNNEFESPAGTPLRVSLMRLLEETHGGGGGGGGDLGVAGNESVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIF Homology
BLAST of Sed0020262 vs. NCBI nr
Match: XP_004134982.2 (uncharacterized protein LOC101211804 [Cucumis sativus] >XP_031742563.1 uncharacterized protein LOC101211804 [Cucumis sativus] >KAE8647651.1 hypothetical protein Csa_002787 [Cucumis sativus]) HSP 1 Score: 287.3 bits (734), Expect = 9.8e-74 Identity = 154/215 (71.63%), Postives = 168/215 (78.14%), Query Frame = 0
BLAST of Sed0020262 vs. NCBI nr
Match: XP_008440052.1 (PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo] >XP_008440053.1 PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo]) HSP 1 Score: 287.3 bits (734), Expect = 9.8e-74 Identity = 156/214 (72.90%), Postives = 167/214 (78.04%), Query Frame = 0
BLAST of Sed0020262 vs. NCBI nr
Match: XP_023518592.1 (E3 ubiquitin-protein ligase CIP8-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 286.6 bits (732), Expect = 1.7e-73 Identity = 160/221 (72.40%), Postives = 169/221 (76.47%), Query Frame = 0
BLAST of Sed0020262 vs. NCBI nr
Match: XP_023003446.1 (E3 ubiquitin-protein ligase CIP8-like [Cucurbita maxima]) HSP 1 Score: 286.2 bits (731), Expect = 2.2e-73 Identity = 161/221 (72.85%), Postives = 169/221 (76.47%), Query Frame = 0
BLAST of Sed0020262 vs. NCBI nr
Match: XP_022132493.1 (E3 ubiquitin-protein ligase RFWD2 isoform X2 [Momordica charantia] >XP_022132495.1 E3 ubiquitin-protein ligase RFWD2 isoform X2 [Momordica charantia]) HSP 1 Score: 285.8 bits (730), Expect = 2.9e-73 Identity = 159/214 (74.30%), Postives = 167/214 (78.04%), Query Frame = 0
BLAST of Sed0020262 vs. ExPASy Swiss-Prot
Match: Q8LA32 (Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 6.3e-07 Identity = 29/80 (36.25%), Postives = 41/80 (51.25%), Query Frame = 0
BLAST of Sed0020262 vs. ExPASy Swiss-Prot
Match: Q8BFW4 (Tripartite motif-containing protein 65 OS=Mus musculus OX=10090 GN=Trim65 PE=1 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 1.0e-04 Identity = 18/45 (40.00%), Postives = 27/45 (60.00%), Query Frame = 0
BLAST of Sed0020262 vs. ExPASy TrEMBL
Match: A0A1S3AZT0 (uncharacterized protein LOC103484644 OS=Cucumis melo OX=3656 GN=LOC103484644 PE=4 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 4.7e-74 Identity = 156/214 (72.90%), Postives = 167/214 (78.04%), Query Frame = 0
BLAST of Sed0020262 vs. ExPASy TrEMBL
Match: A0A0A0KMY7 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G512860 PE=4 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 4.7e-74 Identity = 154/215 (71.63%), Postives = 168/215 (78.14%), Query Frame = 0
BLAST of Sed0020262 vs. ExPASy TrEMBL
Match: A0A6J1KPA2 (E3 ubiquitin-protein ligase CIP8-like OS=Cucurbita maxima OX=3661 GN=LOC111497056 PE=4 SV=1) HSP 1 Score: 286.2 bits (731), Expect = 1.1e-73 Identity = 161/221 (72.85%), Postives = 169/221 (76.47%), Query Frame = 0
BLAST of Sed0020262 vs. ExPASy TrEMBL
Match: A0A6J1BWE5 (E3 ubiquitin-protein ligase RFWD2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005336 PE=4 SV=1) HSP 1 Score: 285.8 bits (730), Expect = 1.4e-73 Identity = 159/214 (74.30%), Postives = 167/214 (78.04%), Query Frame = 0
BLAST of Sed0020262 vs. ExPASy TrEMBL
Match: A0A6J1BTZ3 (E3 ubiquitin-protein ligase RFWD2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005336 PE=4 SV=1) HSP 1 Score: 285.8 bits (730), Expect = 1.4e-73 Identity = 159/214 (74.30%), Postives = 167/214 (78.04%), Query Frame = 0
BLAST of Sed0020262 vs. TAIR 10
Match: AT4G03965.1 (RING/U-box superfamily protein ) HSP 1 Score: 174.1 bits (440), Expect = 1.1e-43 Identity = 105/211 (49.76%), Postives = 118/211 (55.92%), Query Frame = 0
BLAST of Sed0020262 vs. TAIR 10
Match: AT4G22250.1 (RING/U-box superfamily protein ) HSP 1 Score: 172.6 bits (436), Expect = 3.3e-43 Identity = 105/212 (49.53%), Postives = 123/212 (58.02%), Query Frame = 0
BLAST of Sed0020262 vs. TAIR 10
Match: AT1G62370.1 (RING/U-box superfamily protein ) HSP 1 Score: 117.5 bits (293), Expect = 1.3e-26 Identity = 84/210 (40.00%), Postives = 105/210 (50.00%), Query Frame = 0
BLAST of Sed0020262 vs. TAIR 10
Match: AT3G25030.1 (RING/U-box superfamily protein ) HSP 1 Score: 108.6 bits (270), Expect = 5.8e-24 Identity = 67/139 (48.20%), Postives = 76/139 (54.68%), Query Frame = 0
BLAST of Sed0020262 vs. TAIR 10
Match: AT3G25030.2 (RING/U-box superfamily protein ) HSP 1 Score: 108.6 bits (270), Expect = 5.8e-24 Identity = 67/139 (48.20%), Postives = 76/139 (54.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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