Sed0020224 (gene) Chayote v1

Overview


Name	Sed0020224
Type	gene
Organism	Sechium edule (Chayote v1)
Description	VQ domain-containing protein
Location	LG11: 1823922 .. 1824278 (-)
RNA-Seq Expression	Sed0020224
Synteny	Sed0020224

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAAGTGTGGAGAGAATCAACAAAACTATGAAAACCCCACAAAAGTTCAGAGAAAACCCATCAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCAGCTGAGTTTAGAGCCATTGTTCAGCAACTCACTGGAGTTGACTCCGGCGGCTCGGTTCGTTGCCGGAGAAGCCACAAATCAGCTGCAAGCAGCGGTCGGAGTACTCCGTCTTTTTCGATGTTGCATGCAGATCATGAAATGGAAGTTGTCGAGTTCCCGAACGACATGTCGTCGTCGCTGCTCGAACTCAATGATGGTTATTTTGGTAGCTTTATGGGATTCCAATCTCCTTGTTTGTTTTGA

mRNA sequence

ATGGGAAAGTGTGGAGAGAATCAACAAAACTATGAAAACCCCACAAAAGTTCAGAGAAAACCCATCAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCAGCTGAGTTTAGAGCCATTGTTCAGCAACTCACTGGAGTTGACTCCGGCGGCTCGGTTCGTTGCCGGAGAAGCCACAAATCAGCTGCAAGCAGCGGTCGGAGTACTCCGTCTTTTTCGATGTTGCATGCAGATCATGAAATGGAAGTTGTCGAGTTCCCGAACGACATGTCGTCGTCGCTGCTCGAACTCAATGATGGTTATTTTGGTAGCTTTATGGGATTCCAATCTCCTTGTTTGTTTTGA

Coding sequence (CDS)

ATGGGAAAGTGTGGAGAGAATCAACAAAACTATGAAAACCCCACAAAAGTTCAGAGAAAACCCATCAAAGTAAAGTACATTTCAAGTCCAATGATGATCAAAGCAAGCAATGCAGCTGAGTTTAGAGCCATTGTTCAGCAACTCACTGGAGTTGACTCCGGCGGCTCGGTTCGTTGCCGGAGAAGCCACAAATCAGCTGCAAGCAGCGGTCGGAGTACTCCGTCTTTTTCGATGTTGCATGCAGATCATGAAATGGAAGTTGTCGAGTTCCCGAACGACATGTCGTCGTCGCTGCTCGAACTCAATGATGGTTATTTTGGTAGCTTTATGGGATTCCAATCTCCTTGTTTGTTTTGA

Protein sequence

MGKCGENQQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVEFPNDMSSSLLELNDGYFGSFMGFQSPCLF

Homology

[Close]

BLAST of Sed0020224 vs. NCBI nr
Match: KAG6599333.1 (hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-22
Identity = 72/130 (55.38%), Postives = 88/130 (67.69%), Query Frame = 0


Query: 1   MGKCGEN----QQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGS 60
           MGKCGEN    Q+  +NPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG  S   
Sbjct: 1   MGKCGENEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHSP 60

Query: 61  VRCRRSHKSAASSGRSTPSFSMLHADHEMEVVEFPNDMSSSL--------LELNDGYFGS 119
            R R +HK    + + TPS S LHA+ +ME ++  ++MSS L        + L++    +
Sbjct: 61  TR-RSNHKPPPHAAQ-TPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVTLDNVLTNN 120

[Close]

BLAST of Sed0020224 vs. NCBI nr
Match: KGN60779.1 (hypothetical protein Csa_019238 [Cucumis sativus])

HSP 1 Score: 108.2 bits (269), Expect = 4.8e-20
Identity = 77/141 (54.61%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   MGKCGEN----------QQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTG 60
           MGKCGEN          Q   +NPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  VDSGGSVRCRRSHKSAASSGRSTPSFSMLHAD-HEMEVVEFPND--MSSSLLELNDGYF- 119
            DS    R RR+ K  +   R TPS +M HAD HEMEV++F +D  M S L     G F 
Sbjct: 61  FDSNTPTR-RRNQKLLSDCAR-TPS-AMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFE 120

[Close]

BLAST of Sed0020224 vs. NCBI nr
Match: XP_039063993.1 (uncharacterized protein LOC120208953 [Hibiscus syriacus])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 51/113 (45.13%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 12  ENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGR 71
           + PTK ++ PIK++YISSP+M+KA N AEFRA+VQQLTG +S   +R  RS    A+  R
Sbjct: 13  QKPTKPKKNPIKIRYISSPVMVKACNEAEFRAVVQQLTGQNS--DIREHRSITEEANQVR 72

Query: 72  STPSFSMLHADHEMEVVEFPNDMSSSLLELND------GYFGSFMGFQSPCLF 119
             P+F         +   FP DMSS  LEL D      G   + +GFQSP +F
Sbjct: 73  DIPNFQADSLAKIDDTNTFPYDMSS--LELFDESFVWRGVAENLVGFQSPSIF 121

[Close]

BLAST of Sed0020224 vs. NCBI nr
Match: KAA0063578.1 (hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-09
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 31  MMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVEF 90
           MMIKAS+A EFRAIVQQLTG DS  +   RR+ KS +   R TPS SM HAD EMEV++F
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCAR-TPS-SMFHADREMEVLKF 60

Query: 91  PNDMSSSLLELND 104
            +D  +SLL+ +D
Sbjct: 61  SDDHMASLLQFDD 71

[Close]

BLAST of Sed0020224 vs. NCBI nr
Match: XP_021282108.1 (uncharacterized protein LOC110414990 [Herrania umbratica])

HSP 1 Score: 71.6 bits (174), Expect = 5.0e-09
Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 1   MGKCGENQ-QNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRC 60
           MGK  +++    +NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +S      
Sbjct: 20  MGKLRDHRCHKSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNSDVG--- 79

Query: 61  RRSHKSAASSGRSTPSFSMLHADHEMEVVE-------FPNDMSSSLLELNDGYF-----G 119
             S+        +    S  H D     V+       F +DMSS  LE ++G+       
Sbjct: 80  EPSNVPTTLPEEANQVHSPFHVDSPPAKVDDKSLLDTFQDDMSS--LEFDEGFLWRAVPE 139

[Close]

BLAST of Sed0020224 vs. ExPASy TrEMBL
Match: A0A0A0LIA7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.3e-20
Identity = 77/141 (54.61%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   MGKCGEN----------QQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTG 60
           MGKCGEN          Q   +NPTKVQRKPIKVKYISSPMMIKASNA EFRAIVQQLTG
Sbjct: 1   MGKCGENQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTG 60

Query: 61  VDSGGSVRCRRSHKSAASSGRSTPSFSMLHAD-HEMEVVEFPND--MSSSLLELNDGYF- 119
            DS    R RR+ K  +   R TPS +M HAD HEMEV++F +D  M S L     G F 
Sbjct: 61  FDSNTPTR-RRNQKLLSDCAR-TPS-AMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFE 120

[Close]

BLAST of Sed0020224 vs. ExPASy TrEMBL
Match: A0A5A7V7M1 (VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G00880 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.4e-09
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 0


Query: 31  MMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGRSTPSFSMLHADHEMEVVEF 90
           MMIKAS+A EFRAIVQQLTG DS  +   RR+ KS +   R TPS SM HAD EMEV++F
Sbjct: 1   MMIKASSALEFRAIVQQLTGFDSNSTPTRRRNQKSVSDCAR-TPS-SMFHADREMEVLKF 60

Query: 91  PNDMSSSLLELND 104
            +D  +SLL+ +D
Sbjct: 61  SDDHMASLLQFDD 71

[Close]

BLAST of Sed0020224 vs. ExPASy TrEMBL
Match: A0A6J1A533 (uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC110414990 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.4e-09
Identity = 53/131 (40.46%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 1   MGKCGENQ-QNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRC 60
           MGK  +++    +NPTK ++ PIK+KYISSPMM+KASNA EFRAIVQ+LTG +S      
Sbjct: 20  MGKLRDHRCHKSKNPTKAKKNPIKIKYISSPMMVKASNADEFRAIVQELTGRNSDVG--- 79

Query: 61  RRSHKSAASSGRSTPSFSMLHADHEMEVVE-------FPNDMSSSLLELNDGYF-----G 119
             S+        +    S  H D     V+       F +DMSS  LE ++G+       
Sbjct: 80  EPSNVPTTLPEEANQVHSPFHVDSPPAKVDDKSLLDTFQDDMSS--LEFDEGFLWRAVPE 139

[Close]

BLAST of Sed0020224 vs. ExPASy TrEMBL
Match: A0A2C9VHQ0 (VQ domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_08G137100 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.6e-08
Identity = 47/113 (41.59%), Postives = 64/113 (56.64%), Query Frame = 0


Query: 12  ENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDSGGSVRCRRSHKSAASSGR 71
           + P+K ++KP+KV YIS+P M++A+NA+EFRAIVQ+LTG DS         + + AS   
Sbjct: 15  QKPSKNKKKPVKVTYISNPTMVRATNASEFRAIVQELTGKDSKIVDTWDPCNYAEASQVL 74

Query: 72  STPSFSMLHADHE-MEVVEFPNDMSSSLLELNDGYF-----GSFMGFQSPCLF 119
                  L  D E  + + F    SSS LE+ND +F      SF  FQS C F
Sbjct: 75  VNSETLRLTMDSENADDIFFNCASSSSTLEMNDSFFWKDFSESFFEFQSACAF 127

[Close]

BLAST of Sed0020224 vs. ExPASy TrEMBL
Match: A0A2P5BBD6 (VQ motif containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_253950 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 6  ENQQNYENPTKVQRKPIKVKYISSPMMIKASNAAEFRAIVQQLTGVDS 54
          EN    + P K ++KPIK+KYISSPMM++A NA+EFRAIVQQLTG +S
Sbjct: 2  ENSLKRQKPNKAKKKPIKIKYISSPMMVQAKNASEFRAIVQQLTGKNS 49

The following BLAST results are available for this feature:

BLAST of Sed0020224 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6599333.1	2.3e-22	55.38	hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN60779.1	4.8e-20	54.61	hypothetical protein Csa_019238 [Cucumis sativus]	[more]
XP_039063993.1	1.2e-10	45.13	uncharacterized protein LOC120208953 [Hibiscus syriacus]	[more]
KAA0063578.1	2.9e-09	58.90	hypothetical protein E6C27_scaffold329G00880 [Cucumis melo var. makuwa]	[more]
XP_021282108.1	5.0e-09	40.46	uncharacterized protein LOC110414990 [Herrania umbratica]	[more]

BLAST of Sed0020224 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0020224 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIA7	2.3e-20	54.61	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=...	[more]
A0A5A7V7M1	1.4e-09	58.90	VQ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A6J1A533	2.4e-09	40.46	uncharacterized protein LOC110414990 OS=Herrania umbratica OX=108875 GN=LOC11041...	[more]
A0A2C9VHQ0	4.6e-08	41.59	VQ domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_08G137100 PE=...	[more]
A0A2P5BBD6	1.3e-07	64.58	VQ motif containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_25395...	[more]

BLAST of Sed0020224 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 27..53 e-value: 1.8E-10 score: 40.1
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 6..116
None	No IPR available	PANTHER	PTHR33624:SF17	VQ MOTIF PROTEIN	coord: 6..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0020224.1	Sed0020224.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity