Sed0020023 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTGGCGTGGGTTTCAGCTTTGACTGGAATATCTCTCTATATATACTCCATCTCTGCTACTGGTTTCTTCTCATAGCTCAATTTCTCTCAGTTCATCTTGTAGTCTTCATCTTCTTCTCTCTCTGTTTCTCGATTCTTCGTTTTGTTGTTTTCGATTTATAGAAATGGCGATTAGAAGTTTGGTGGCCATGATTTTGGCGGCGATGTTGATCGGCACTTCAATCGCGCAATCGCCGGCGCCTTCTCCGTCTCCGTCATTGTCTCCGAGTAGATCGCCGTCGTTATCTCCGTCTGTGAAGTCGCCGGAATCCTCACCGGCTGCGGCGCCTACTCCGACCTCTATGAAGTCTCCGCCGTCTCCTCCGGCGGCGTCTCCGTCTTCGATCTCGTCGCCGCCGGCTGACGCTCCGGCTCCGTCTGGAAACGGCGCCGCTTCGATTTCTTTCTCGCTGTTCGGATCTGTGGCCGTTGTGTTATACGCTGCTGTTTTGATCATGTGAGAGCAGGTTGATTTGATGAGTTCACTGTTCTTTTGATCTGAGTGATTTGTTTATATAATTGCATTTCTTACATTTTTATTTTGAATTTTTTTTGTTTCTTTCACAGTTTCTTATGGATTTTATACCTTTTTTTTCTCTGATTAAATTTGTTTTGTTGTTAGCTGAGCTCTGATTATTATCATATATATTAATTTTTTAAATCA CTGGCGTGGGTTTCAGCTTTGACTGGAATATCTCTCTATATATACTCCATCTCTGCTACTGGTTTCTTCTCATAGCTCAATTTCTCTCAGTTCATCTTGTAGTCTTCATCTTCTTCTCTCTCTGTTTCTCGATTCTTCGTTTTGTTGTTTTCGATTTATAGAAATGGCGATTAGAAGTTTGGTGGCCATGATTTTGGCGGCGATGTTGATCGGCACTTCAATCGCGCAATCGCCGGCGCCTTCTCCGTCTCCGTCATTGTCTCCGAGTAGATCGCCGTCGTTATCTCCGTCTGTGAAGTCGCCGGAATCCTCACCGGCTGCGGCGCCTACTCCGACCTCTATGAAGTCTCCGCCGTCTCCTCCGGCGGCGTCTCCGTCTTCGATCTCGTCGCCGCCGGCTGACGCTCCGGCTCCGTCTGGAAACGGCGCCGCTTCGATTTCTTTCTCGCTGTTCGGATCTGTGGCCGTTGTGTTATACGCTGCTGTTTTGATCATGTGAGAGCAGGTTGATTTGATGAGTTCACTGTTCTTTTGATCTGAGTGATTTGTTTATATAATTGCATTTCTTACATTTTTATTTTGAATTTTTTTTGTTTCTTTCACAGTTTCTTATGGATTTTATACCTTTTTTTTCTCTGATTAAATTTGTTTTGTTGTTAGCTGAGCTCTGATTATTATCATATATATTAATTTTTTAAATCA ATGGCGATTAGAAGTTTGGTGGCCATGATTTTGGCGGCGATGTTGATCGGCACTTCAATCGCGCAATCGCCGGCGCCTTCTCCGTCTCCGTCATTGTCTCCGAGTAGATCGCCGTCGTTATCTCCGTCTGTGAAGTCGCCGGAATCCTCACCGGCTGCGGCGCCTACTCCGACCTCTATGAAGTCTCCGCCGTCTCCTCCGGCGGCGTCTCCGTCTTCGATCTCGTCGCCGCCGGCTGACGCTCCGGCTCCGTCTGGAAACGGCGCCGCTTCGATTTCTTTCTCGCTGTTCGGATCTGTGGCCGTTGTGTTATACGCTGCTGTTTTGATCATGTGA MAIRSLVAMILAAMLIGTSIAQSPAPSPSPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAASPSSISSPPADAPAPSGNGAASISFSLFGSVAVVLYAAVLIM Homology
BLAST of Sed0020023 vs. NCBI nr
Match: XP_038877310.1 (classical arabinogalactan protein 1 [Benincasa hispida]) HSP 1 Score: 132.5 bits (332), Expect = 2.2e-27 Identity = 90/125 (72.00%), Postives = 101/125 (80.80%), Query Frame = 0
BLAST of Sed0020023 vs. NCBI nr
Match: XP_022942993.1 (classical arabinogalactan protein 1-like [Cucurbita moschata]) HSP 1 Score: 121.7 bits (304), Expect = 4.0e-24 Identity = 85/121 (70.25%), Postives = 99/121 (81.82%), Query Frame = 0
BLAST of Sed0020023 vs. NCBI nr
Match: KAG7030900.1 (hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 121.3 bits (303), Expect = 5.2e-24 Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 0
BLAST of Sed0020023 vs. NCBI nr
Match: XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 118.2 bits (295), Expect = 4.4e-23 Identity = 83/123 (67.48%), Postives = 99/123 (80.49%), Query Frame = 0
BLAST of Sed0020023 vs. NCBI nr
Match: XP_022922765.1 (classical arabinogalactan protein 1-like [Cucurbita moschata] >KAG6576848.1 Classical arabinogalactan protein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 117.1 bits (292), Expect = 9.8e-23 Identity = 85/113 (75.22%), Postives = 95/113 (84.07%), Query Frame = 0
BLAST of Sed0020023 vs. ExPASy Swiss-Prot
Match: Q8LCN5 (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2 SV=2) HSP 1 Score: 67.0 bits (162), Expect = 1.5e-10 Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 0
BLAST of Sed0020023 vs. ExPASy TrEMBL
Match: A0A6J1FW49 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447861 PE=4 SV=1) HSP 1 Score: 121.7 bits (304), Expect = 1.9e-24 Identity = 85/121 (70.25%), Postives = 99/121 (81.82%), Query Frame = 0
BLAST of Sed0020023 vs. ExPASy TrEMBL
Match: A0A6J1E9Q3 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430664 PE=4 SV=1) HSP 1 Score: 117.1 bits (292), Expect = 4.7e-23 Identity = 85/113 (75.22%), Postives = 95/113 (84.07%), Query Frame = 0
BLAST of Sed0020023 vs. ExPASy TrEMBL
Match: A0A6J1J6X2 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111483108 PE=4 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 6.2e-23 Identity = 85/113 (75.22%), Postives = 94/113 (83.19%), Query Frame = 0
BLAST of Sed0020023 vs. ExPASy TrEMBL
Match: A0A6J1JSK4 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488535 PE=4 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22 Identity = 82/121 (67.77%), Postives = 97/121 (80.17%), Query Frame = 0
BLAST of Sed0020023 vs. ExPASy TrEMBL
Match: A0A0A0KZB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 3.4e-21 Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 0
BLAST of Sed0020023 vs. TAIR 10
Match: AT5G64310.1 (arabinogalactan protein 1 ) HSP 1 Score: 67.0 bits (162), Expect = 1.1e-11 Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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