Sed0020023 (gene) Chayote v1

Overview
NameSed0020023
Typegene
OrganismSechium edule (Chayote v1)
Descriptionclassical arabinogalactan protein 1-like
LocationLG06: 8175383 .. 8176084 (+)
RNA-Seq ExpressionSed0020023
SyntenySed0020023
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGGCGTGGGTTTCAGCTTTGACTGGAATATCTCTCTATATATACTCCATCTCTGCTACTGGTTTCTTCTCATAGCTCAATTTCTCTCAGTTCATCTTGTAGTCTTCATCTTCTTCTCTCTCTGTTTCTCGATTCTTCGTTTTGTTGTTTTCGATTTATAGAAATGGCGATTAGAAGTTTGGTGGCCATGATTTTGGCGGCGATGTTGATCGGCACTTCAATCGCGCAATCGCCGGCGCCTTCTCCGTCTCCGTCATTGTCTCCGAGTAGATCGCCGTCGTTATCTCCGTCTGTGAAGTCGCCGGAATCCTCACCGGCTGCGGCGCCTACTCCGACCTCTATGAAGTCTCCGCCGTCTCCTCCGGCGGCGTCTCCGTCTTCGATCTCGTCGCCGCCGGCTGACGCTCCGGCTCCGTCTGGAAACGGCGCCGCTTCGATTTCTTTCTCGCTGTTCGGATCTGTGGCCGTTGTGTTATACGCTGCTGTTTTGATCATGTGAGAGCAGGTTGATTTGATGAGTTCACTGTTCTTTTGATCTGAGTGATTTGTTTATATAATTGCATTTCTTACATTTTTATTTTGAATTTTTTTTGTTTCTTTCACAGTTTCTTATGGATTTTATACCTTTTTTTTCTCTGATTAAATTTGTTTTGTTGTTAGCTGAGCTCTGATTATTATCATATATATTAATTTTTTAAATCA

mRNA sequence

CTGGCGTGGGTTTCAGCTTTGACTGGAATATCTCTCTATATATACTCCATCTCTGCTACTGGTTTCTTCTCATAGCTCAATTTCTCTCAGTTCATCTTGTAGTCTTCATCTTCTTCTCTCTCTGTTTCTCGATTCTTCGTTTTGTTGTTTTCGATTTATAGAAATGGCGATTAGAAGTTTGGTGGCCATGATTTTGGCGGCGATGTTGATCGGCACTTCAATCGCGCAATCGCCGGCGCCTTCTCCGTCTCCGTCATTGTCTCCGAGTAGATCGCCGTCGTTATCTCCGTCTGTGAAGTCGCCGGAATCCTCACCGGCTGCGGCGCCTACTCCGACCTCTATGAAGTCTCCGCCGTCTCCTCCGGCGGCGTCTCCGTCTTCGATCTCGTCGCCGCCGGCTGACGCTCCGGCTCCGTCTGGAAACGGCGCCGCTTCGATTTCTTTCTCGCTGTTCGGATCTGTGGCCGTTGTGTTATACGCTGCTGTTTTGATCATGTGAGAGCAGGTTGATTTGATGAGTTCACTGTTCTTTTGATCTGAGTGATTTGTTTATATAATTGCATTTCTTACATTTTTATTTTGAATTTTTTTTGTTTCTTTCACAGTTTCTTATGGATTTTATACCTTTTTTTTCTCTGATTAAATTTGTTTTGTTGTTAGCTGAGCTCTGATTATTATCATATATATTAATTTTTTAAATCA

Coding sequence (CDS)

ATGGCGATTAGAAGTTTGGTGGCCATGATTTTGGCGGCGATGTTGATCGGCACTTCAATCGCGCAATCGCCGGCGCCTTCTCCGTCTCCGTCATTGTCTCCGAGTAGATCGCCGTCGTTATCTCCGTCTGTGAAGTCGCCGGAATCCTCACCGGCTGCGGCGCCTACTCCGACCTCTATGAAGTCTCCGCCGTCTCCTCCGGCGGCGTCTCCGTCTTCGATCTCGTCGCCGCCGGCTGACGCTCCGGCTCCGTCTGGAAACGGCGCCGCTTCGATTTCTTTCTCGCTGTTCGGATCTGTGGCCGTTGTGTTATACGCTGCTGTTTTGATCATGTGA

Protein sequence

MAIRSLVAMILAAMLIGTSIAQSPAPSPSPSLSPSRSPSLSPSVKSPESSPAAAPTPTSMKSPPSPPAASPSSISSPPADAPAPSGNGAASISFSLFGSVAVVLYAAVLIM
Homology
BLAST of Sed0020023 vs. NCBI nr
Match: XP_038877310.1 (classical arabinogalactan protein 1 [Benincasa hispida])

HSP 1 Score: 132.5 bits (332), Expect = 2.2e-27
Identity = 90/125 (72.00%), Postives = 101/125 (80.80%), Query Frame = 0

Query: 1   MAIRSLVAMILAAMLIGTSIAQSPAPSPSPSLSPSRSPSLSPSVKSPESSPAAAPTPTSM 60
           MAIRS VAMIL A+LIG++IAQSP  SPSPS SPS++PS SPSVKSP+SSPAAAPTP+S+
Sbjct: 1   MAIRSFVAMILVALLIGSAIAQSPGASPSPSKSPSKAPSASPSVKSPKSSPAAAPTPSSL 60

Query: 61  KSPPSP--------------PAASPSSISSPPADAPAPSGNGAASISFSLFGSVAVVLYA 112
           KSPPSP              PA SPS ISSPPADAPAPSGNGAASISFS+FGSVAVVLY 
Sbjct: 61  KSPPSPPSTSPATSPSPVTSPATSPSLISSPPADAPAPSGNGAASISFSVFGSVAVVLYT 120

BLAST of Sed0020023 vs. NCBI nr
Match: XP_022942993.1 (classical arabinogalactan protein 1-like [Cucurbita moschata])

HSP 1 Score: 121.7 bits (304), Expect = 4.0e-24
Identity = 85/121 (70.25%), Postives = 99/121 (81.82%), Query Frame = 0

Query: 1   MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPT 60
           MAIR  V M+  AMLI ++IAQSP+ SP  SP+ SPS++PS+SPSV+SP+SSPAAAPTP 
Sbjct: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SMKSPPSPPAA--------SPSSISSPPADAPAPSGNGAASISFSLFGSVAVVLYAAVLI 112
           S+KSPPSPPAA        SPSSISSPPADAPAPSGN AASISFS+FGSVA VLYA VL+
Sbjct: 61  SLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYAIVLM 120

BLAST of Sed0020023 vs. NCBI nr
Match: KAG7030900.1 (hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.3 bits (303), Expect = 5.2e-24
Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 0

Query: 1   MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPT 60
           MAIR  V M++ AMLI ++IAQSP+ SP  SP+ SPS++PS+SPSV+SP+SSPAAAPTP 
Sbjct: 1   MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SMKSPPSPPAA--------SPSSISSPPADAPAPSGNGAASISFSLFGSVAVVLYA 107
           S+KSPPSPPAA        SPSSISSPPADAPAPSGN AASISFS+FGSVA VLYA
Sbjct: 61  SLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYA 116

BLAST of Sed0020023 vs. NCBI nr
Match: XP_023542663.1 (classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 118.2 bits (295), Expect = 4.4e-23
Identity = 83/123 (67.48%), Postives = 99/123 (80.49%), Query Frame = 0

Query: 1   MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPT 60
           MAIR  V M++ AMLI ++IAQSP+ SP  SP+ SPS++PS+SPSV+SP+SSPAAAPTP 
Sbjct: 1   MAIRGFVVMVMVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SMKSPPSPPAA----------SPSSISSPPADAPAPSGNGAASISFSLFGSVAVVLYAAV 112
           S++SPPSPPAA          SPSSISSPPADAPAPSGN AASIS S+FGSVA VLYA V
Sbjct: 61  SLQSPPSPPAASPSLSPSPSPSPSSISSPPADAPAPSGNAAASISLSMFGSVAAVLYAIV 120

BLAST of Sed0020023 vs. NCBI nr
Match: XP_022922765.1 (classical arabinogalactan protein 1-like [Cucurbita moschata] >KAG6576848.1 Classical arabinogalactan protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117.1 bits (292), Expect = 9.8e-23
Identity = 85/113 (75.22%), Postives = 95/113 (84.07%), Query Frame = 0

Query: 1   MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPT 60
           MAIRS V MIL A+LIG++IAQSPA SP  SP  SPS++PS SPSVKSP+SSP AAPTP 
Sbjct: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPTPA 60

Query: 61  SMKSPPSPPAASPSSISSPPADAPAPSGNGAASISFSLFGSVAVVLYAAVLIM 112
           S  S    PAASPSSISSPPADAPAPSG+GAASISFS+FGSVAVVLYA VL++
Sbjct: 61  SSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVLYAVVLMI 112

BLAST of Sed0020023 vs. ExPASy Swiss-Prot
Match: Q8LCN5 (Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2 SV=2)

HSP 1 Score: 67.0 bits (162), Expect = 1.5e-10
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 0

Query: 4   RSLVAMILAAMLIGTSIAQSPAPSP--------SPSLSPSR--SPSLSPSVKSPESSPAA 63
           +SLV ++LAA+LI +++AQSPAP+P        SP+ SP +  +P+ +P V SP  SPAA
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPAA 64

Query: 64  APTPTSMKSPPSP----------PAASPSSISSPPADAPAPSGNGAASISFSLFGSVAVV 112
           A TP S  SPPSP          PA SPS+IS  P +AP P+  GA S  F+ FGSVAV+
Sbjct: 65  ALTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSVAVM 124

BLAST of Sed0020023 vs. ExPASy TrEMBL
Match: A0A6J1FW49 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111447861 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.9e-24
Identity = 85/121 (70.25%), Postives = 99/121 (81.82%), Query Frame = 0

Query: 1   MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPT 60
           MAIR  V M+  AMLI ++IAQSP+ SP  SP+ SPS++PS+SPSV+SP+SSPAAAPTP 
Sbjct: 1   MAIRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVESPKSSPAAAPTPA 60

Query: 61  SMKSPPSPPAA--------SPSSISSPPADAPAPSGNGAASISFSLFGSVAVVLYAAVLI 112
           S+KSPPSPPAA        SPSSISSPPADAPAPSGN AASISFS+FGSVA VLYA VL+
Sbjct: 61  SLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNAAASISFSMFGSVATVLYAIVLM 120

BLAST of Sed0020023 vs. ExPASy TrEMBL
Match: A0A6J1E9Q3 (classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111430664 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.7e-23
Identity = 85/113 (75.22%), Postives = 95/113 (84.07%), Query Frame = 0

Query: 1   MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPT 60
           MAIRS V MIL A+LIG++IAQSPA SP  SP  SPS++PS SPSVKSP+SSP AAPTP 
Sbjct: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPSASPSVKSPKSSP-AAPTPA 60

Query: 61  SMKSPPSPPAASPSSISSPPADAPAPSGNGAASISFSLFGSVAVVLYAAVLIM 112
           S  S    PAASPSSISSPPADAPAPSG+GAASISFS+FGSVAVVLYA VL++
Sbjct: 61  SSPSTSPSPAASPSSISSPPADAPAPSGSGAASISFSVFGSVAVVLYAVVLMI 112

BLAST of Sed0020023 vs. ExPASy TrEMBL
Match: A0A6J1J6X2 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111483108 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 6.2e-23
Identity = 85/113 (75.22%), Postives = 94/113 (83.19%), Query Frame = 0

Query: 1   MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPT 60
           MAIRS V MIL A+LIG++IAQSPA SP  SP  SPS++P  SPSVKSP+SSP AAPTP 
Sbjct: 1   MAIRSFVVMILVALLIGSAIAQSPAASPSLSPRKSPSKAPLASPSVKSPKSSP-AAPTPA 60

Query: 61  SMKSPPSPPAASPSSISSPPADAPAPSGNGAASISFSLFGSVAVVLYAAVLIM 112
           S  S    PAASPSSISSPPADAPAPSGNGAASISFS+FGSVAVVLYA VL++
Sbjct: 61  SSPSTSPSPAASPSSISSPPADAPAPSGNGAASISFSVFGSVAVVLYAVVLMI 112

BLAST of Sed0020023 vs. ExPASy TrEMBL
Match: A0A6J1JSK4 (classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111488535 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.4e-22
Identity = 82/121 (67.77%), Postives = 97/121 (80.17%), Query Frame = 0

Query: 1   MAIRSLVAMILAAMLIGTSIAQSPAPSP--SPSLSPSRSPSLSPSVKSPESSPAAAPTPT 60
           MA R  V M+  AMLI ++IAQSP+ SP  SP+ SPS++PS+SPSV+SP+SSPAAAPTPT
Sbjct: 1   MAHRGFVVMVTVAMLIVSAIAQSPSASPSLSPTKSPSKAPSISPSVQSPKSSPAAAPTPT 60

Query: 61  SMKSPPSPPAA--------SPSSISSPPADAPAPSGNGAASISFSLFGSVAVVLYAAVLI 112
           S+KSPPSPPAA        SPSSISSPPADAPAPSGN AASIS S+FGSVA VL+A V +
Sbjct: 61  SLKSPPSPPAASPSLSPSPSPSSISSPPADAPAPSGNSAASISLSMFGSVAAVLFAIVFM 120

BLAST of Sed0020023 vs. ExPASy TrEMBL
Match: A0A0A0KZB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.4e-21
Identity = 79/121 (65.29%), Postives = 95/121 (78.51%), Query Frame = 0

Query: 1   MAIRSLVAMILAAMLIGTSIAQSPAPSPSPSLSPSRSPSLSPSVKSPESSPAAAPTPTSM 60
           MAI SLVA+I  +  I ++ AQSPA   SPSLSP++SPS +PS  SP+SSPA APTP+S+
Sbjct: 1   MAITSLVALIFVSFFIASAFAQSPA--ASPSLSPTKSPSKAPSHNSPKSSPAVAPTPSSL 60

Query: 61  KSPPSP----------PAASPSSISSPPADAPAPSGNGAASISFSLFGSVAVVLYAAVLI 112
           KSPPSP          PA+SP+SISSPPADAPAPSGNGAASI+FS+FGSVAV LYA VL+
Sbjct: 61  KSPPSPPSSSPSTSPSPASSPASISSPPADAPAPSGNGAASITFSVFGSVAVALYAVVLM 119

BLAST of Sed0020023 vs. TAIR 10
Match: AT5G64310.1 (arabinogalactan protein 1 )

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-11
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 0

Query: 4   RSLVAMILAAMLIGTSIAQSPAPSP--------SPSLSPSR--SPSLSPSVKSPESSPAA 63
           +SLV ++LAA+LI +++AQSPAP+P        SP+ SP +  +P+ +P V SP  SPAA
Sbjct: 5   KSLVFVLLAALLISSAVAQSPAPAPSNVGGRRISPAPSPKKMTAPAPAPEV-SPSPSPAA 64

Query: 64  APTPTSMKSPPSP----------PAASPSSISSPPADAPAPSGNGAASISFSLFGSVAVV 112
           A TP S  SPPSP          PA SPS+IS  P +AP P+  GA S  F+ FGSVAV+
Sbjct: 65  ALTPESSASPPSPPLADSPTADSPALSPSAISDSPTEAPGPAQGGAVSNKFASFGSVAVM 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038877310.12.2e-2772.00classical arabinogalactan protein 1 [Benincasa hispida][more]
XP_022942993.14.0e-2470.25classical arabinogalactan protein 1-like [Cucurbita moschata][more]
KAG7030900.15.2e-2471.55hypothetical protein SDJN02_04937, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_023542663.14.4e-2367.48classical arabinogalactan protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022922765.19.8e-2375.22classical arabinogalactan protein 1-like [Cucurbita moschata] >KAG6576848.1 Clas... [more]
Match NameE-valueIdentityDescription
Q8LCN51.5e-1049.22Classical arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=AGP1 PE=2... [more]
Match NameE-valueIdentityDescription
A0A6J1FW491.9e-2470.25classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1E9Q34.7e-2375.22classical arabinogalactan protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1J6X26.2e-2375.22classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A6J1JSK41.4e-2267.77classical arabinogalactan protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC11148... [more]
A0A0A0KZB83.4e-2165.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G111620 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G64310.11.1e-1149.22arabinogalactan protein 1 [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..56
NoneNo IPR availablePANTHERPTHR36321:SF2CLASSICAL ARABINOGALACTAN PROTEIN 1coord: 1..111
IPR044959Classical arabinogalactan proteinPANTHERPTHR36321CLASSICAL ARABINOGALACTAN PROTEIN 9coord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0020023.1Sed0020023.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031225 anchored component of membrane
cellular_component GO:0016021 integral component of membrane