Sed0019732 (gene) Chayote v1

Overview


Name	Sed0019732
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG09: 24216066 .. 24216440 (+)
RNA-Seq Expression	Sed0019732
Synteny	Sed0019732

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTGGAAGTAGTCAAAGAAAAGAATGATGAAATCACATCTCTAAAAAATCAAATGGAAAGCCGAGATGTTGTTGAGTCTAGCCATACCGTCGTCAACAAAGACAAGGGGAAATCCATCATGCAAGAAAATCACTCACAACACAATGCTTCAATTGCTACACTGTATGTTCAACAGTTGCAAGATATGATTATGACCTCAATTAGAGCACAATATGGTGGACCTGCTCAGAGCTCTTTGTTATACTCGAAGCCATATACCAAAAGAATCGATAATCTGAGAATGCCTACTGGTTATCAACCACCAAAATTTTAA

mRNA sequence

ATGAATAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTGGAAGTAGTCAAAGAAAAGAATGATGAAATCACATCTCTAAAAAATCAAATGGAAAGCCGAGATGTTGTTGAGTCTAGCCATACCGTCGTCAACAAAGACAAGGGGAAATCCATCATGCAAGAAAATCACTCACAACACAATGCTTCAATTGCTACACTGTATGTTCAACAGTTGCAAGATATGATTATGACCTCAATTAGAGCACAATATGGTGGACCTGCTCAGAGCTCTTTGTTATACTCGAAGCCATATACCAAAAGAATCGATAATCTGAGAATGCCTACTGGTTATCAACCACCAAAATTTTAA

Coding sequence (CDS)

ATGAATAATACGTCTACTAGCGAAGAAAGACTAGCTGAATGTGAAAAGAAGATTAGCATGTTATTGGAAGTAGTCAAAGAAAAGAATGATGAAATCACATCTCTAAAAAATCAAATGGAAAGCCGAGATGTTGTTGAGTCTAGCCATACCGTCGTCAACAAAGACAAGGGGAAATCCATCATGCAAGAAAATCACTCACAACACAATGCTTCAATTGCTACACTGTATGTTCAACAGTTGCAAGATATGATTATGACCTCAATTAGAGCACAATATGGTGGACCTGCTCAGAGCTCTTTGTTATACTCGAAGCCATATACCAAAAGAATCGATAATCTGAGAATGCCTACTGGTTATCAACCACCAAAATTTTAA

Protein sequence

MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESSHTVVNKDKGKSIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSLLYSKPYTKRIDNLRMPTGYQPPKF

Homology

[Close]

BLAST of Sed0019732 vs. NCBI nr
Match: KAA0059562.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 9.5e-35
Identity = 82/126 (65.08%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGK 60
           + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK
Sbjct: 86  VTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTDKGK 145

Query: 61  SIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSLLYSKPYTKRIDNLRMPTG 120
           ++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+  LYSKPYTKRIDNLRMP G
Sbjct: 146 AVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNG 205

Query: 121 YQPPKF 125
           YQPPKF
Sbjct: 206 YQPPKF 211

[Close]

BLAST of Sed0019732 vs. NCBI nr
Match: KAA0037432.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 9.5e-35
Identity = 82/126 (65.08%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGK 60
           + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK
Sbjct: 86  VTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTDKGK 145

Query: 61  SIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSLLYSKPYTKRIDNLRMPTG 120
           ++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+  LYSKPYTKRIDNLRMP G
Sbjct: 146 AVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNG 205

Query: 121 YQPPKF 125
           YQPPKF
Sbjct: 206 YQPPKF 211

[Close]

BLAST of Sed0019732 vs. NCBI nr
Match: KAA0065303.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 9.5e-35
Identity = 82/124 (66.13%), Postives = 101/124 (81.45%), Query Frame = 0


Query: 3   NTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSI 62
           N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK++
Sbjct: 88  NVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTDKGKAV 147

Query: 63  MQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSLLYSKPYTKRIDNLRMPTGYQ 122
           MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+  LYSKPYTKRIDNLRMP GYQ
Sbjct: 148 MQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNGYQ 207

Query: 123 PPKF 125
           PPKF
Sbjct: 208 PPKF 211

[Close]

BLAST of Sed0019732 vs. NCBI nr
Match: TYK03695.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.1 bits (396), Expect = 9.5e-35
Identity = 82/126 (65.08%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGK 60
           + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK
Sbjct: 86  VTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTDKGK 145

Query: 61  SIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSLLYSKPYTKRIDNLRMPTG 120
           ++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+  LYSKPYTKRIDNLRMP G
Sbjct: 146 AVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNG 205

Query: 121 YQPPKF 125
           YQPPKF
Sbjct: 206 YQPPKF 211

[Close]

BLAST of Sed0019732 vs. NCBI nr
Match: KAA0039098.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-34
Identity = 82/126 (65.08%), Postives = 101/126 (80.16%), Query Frame = 0


Query: 1   MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGK 60
           + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK
Sbjct: 86  VTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTDKGK 145

Query: 61  SIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSLLYSKPYTKRIDNLRMPTG 120
           ++MQE+  Q+  SIA+L VQQLQ+MI +SI+ QYGGPAQ+  LYSKPYTKRIDNLRMP G
Sbjct: 146 AVMQESQPQNLTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNG 205

Query: 121 YQPPKF 125
           YQPPKF
Sbjct: 206 YQPPKF 211

[Close]

BLAST of Sed0019732 vs. ExPASy TrEMBL
Match: A0A5A7UUI7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold518G00790 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.6e-35
Identity = 82/126 (65.08%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGK 60
           + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK
Sbjct: 86  VTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTDKGK 145

Query: 61  SIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSLLYSKPYTKRIDNLRMPTG 120
           ++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+  LYSKPYTKRIDNLRMP G
Sbjct: 146 AVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNG 205

Query: 121 YQPPKF 125
           YQPPKF
Sbjct: 206 YQPPKF 211

[Close]

BLAST of Sed0019732 vs. ExPASy TrEMBL
Match: A0A5A7VAV4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00190 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.6e-35
Identity = 82/124 (66.13%), Postives = 101/124 (81.45%), Query Frame = 0


Query: 3   NTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGKSI 62
           N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK++
Sbjct: 88  NVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTDKGKAV 147

Query: 63  MQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSLLYSKPYTKRIDNLRMPTGYQ 122
           MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+  LYSKPYTKRIDNLRMP GYQ
Sbjct: 148 MQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNGYQ 207

Query: 123 PPKF 125
           PPKF
Sbjct: 208 PPKF 211

[Close]

BLAST of Sed0019732 vs. ExPASy TrEMBL
Match: A0A5A7T1V3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold277G00150 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.6e-35
Identity = 82/126 (65.08%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGK 60
           + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK
Sbjct: 86  VTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTDKGK 145

Query: 61  SIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSLLYSKPYTKRIDNLRMPTG 120
           ++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+  LYSKPYTKRIDNLRMP G
Sbjct: 146 AVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNG 205

Query: 121 YQPPKF 125
           YQPPKF
Sbjct: 206 YQPPKF 211

[Close]

BLAST of Sed0019732 vs. ExPASy TrEMBL
Match: A0A5D3BX77 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00570 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 4.6e-35
Identity = 82/126 (65.08%), Postives = 102/126 (80.95%), Query Frame = 0


Query: 1   MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGK 60
           + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK
Sbjct: 86  VTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTDKGK 145

Query: 61  SIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSLLYSKPYTKRIDNLRMPTG 120
           ++MQE+  Q++ SIA+L VQQLQ+MI +SI+ QYGGPAQ+  LYSKPYTKRIDNLRMP G
Sbjct: 146 AVMQESQPQNSTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNG 205

Query: 121 YQPPKF 125
           YQPPKF
Sbjct: 206 YQPPKF 211

[Close]

BLAST of Sed0019732 vs. ExPASy TrEMBL
Match: A0A5D3CSH0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2047G00190 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 82/126 (65.08%), Postives = 101/126 (80.16%), Query Frame = 0


Query: 1   MNNTSTSEERLAECEKKISMLLEVVKEKNDEITSLKNQMESRDVVESS--HTVVNKDKGK 60
           + N  TSE R+AE EKK++ML++VV+E++ EI  LKN +ESRD  ESS  HTV N DKGK
Sbjct: 86  VTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTDKGK 145

Query: 61  SIMQENHSQHNASIATLYVQQLQDMIMTSIRAQYGGPAQSSLLYSKPYTKRIDNLRMPTG 120
           ++MQE+  Q+  SIA+L VQQLQ+MI +SI+ QYGGPAQ+  LYSKPYTKRIDNLRMP G
Sbjct: 146 AVMQESQPQNLTSIASLSVQQLQEMIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNG 205

Query: 121 YQPPKF 125
           YQPPKF
Sbjct: 206 YQPPKF 211

The following BLAST results are available for this feature:

BLAST of Sed0019732 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059562.1	9.5e-35	65.08	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037432.1	9.5e-35	65.08	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065303.1	9.5e-35	66.13	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK03695.1	9.5e-35	65.08	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0039098.1	2.8e-34	65.08	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0019732 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0019732 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UUI7	4.6e-35	65.08	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7VAV4	4.6e-35	66.13	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7T1V3	4.6e-35	65.08	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BX77	4.6e-35	65.08	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CSH0	1.3e-34	65.08	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Sed0019732 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 11..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019732.1	Sed0019732.1	mRNA