Sed0019676 (gene) Chayote v1

Overview


Name	Sed0019676
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Small nuclear ribonucleoprotein E
Location	LG08: 3478962 .. 3483715 (-)
RNA-Seq Expression	Sed0019676
Synteny	Sed0019676

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGCACGAAAGTGCAGAGGATTATGACCCAGCCGATTGTACGTATGCCAATTCCTTCATCTTTCTCCCTTTGTTGCTCTTACTCGAGGCTGGCTTAATCGATTTCTGAGCTTTATTGATGCTTTCTTTATCTTTCTCTGTTTTCCTCTTCACCCCTGTGCTTCTCTGGAACTAGAACTTGATATTCAGGTTTCTTCAAAGTGTAAGAACTTACTCCTCCAAATTTTGATTCATTACATCACTTCCTTTTCTGGTCTGATTCGGATTCCTAATTCGAGTTTGAAATCCATGCAGAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCTCAGGATCGAAGGCCGAATTATTGTAGAGTTTTTACTTTTTCCCTGCTTTACTATTTTTTTTTCTTCTTCTTTTCTATATTGGCAATTAATGTATTAGGATTGAAGGCTCTATTTCTGTATGTGTTGTCTTTTGGTTTTGGTAAAATGAGTTTATAGCATTCTGGTTTTCTTGTTGGTCTATGTTCTTTTTAGTGAGAGATGCACTAACTTCATAGTTGGATGCAATTTACTATCCCATGTGCTCCTTACAGAAATCCTGTGATTTTTGTGGAGCACAGGATATGGGTTTGCTAAAAGCTCTTGGATGTTCTGGCTAAGGACCTCAAACTTCTACTACATATAATGAATCTCTGCAAAACTTGAGTTGAAAGGCATTTGGTTGTGTGTGGGCGGCTTATTAGTTACTAGTTGAATTTGAACCTACTTGAAATTCACGTTAGAAAATAAATTTGCTTGACTTCAAGATTGTGCTTTAGTGTTTAGATTGTAATTTACATTGCCATTGAGAGTTAAACATATGCTAGAAATTTGGTGAATTCTTGGGCGTAGCTTGAAATATCTGCTTATTTAGTCTATCGCCCAAGCTCCCATTAGGAATAGGAATGGGCCATAGTACAAAGTCCTCTTTTCTCATTTCTCTGTGTAGCAAGTGAAGGTTGTTCGCGTCTTAGTTTTATATAGATTGAGTATGTAATGGTAATCTTATTCCAGGTAGGGTGGTTCTTCAATAGTCTGTAATTTGTTATGGTATGAGCCTTACAATCGATGTGTTTAAGTCAACAAAACACAACAAACGAAGAATACCCCGAAGAAAACACTATTCTCTTGATTAATTTCCAGAAAATCCCACAAAAAAACCAGACATCTTAAACACACAGTAAAAAGGAAAACGTAAGCAGGTCGCCAACTTATTAGAGAGAGTTGGGAACCTCTCATGCCGAGAACTAAACCACAAATTTCACAGCAGAAGCCCTAATCTTGCTCTCCCCCCTCCTAGACCCCTACTATGTGCAAACACTCCCTTTCCGTACAATGCACAAATAACAAATCCCCTAAGAGTCACTTTTTGTGTTAGTTTTTTATCTCTCTTTTACTAATGCTCCCGACCTAGACAAACCCTAAACCACTTTCTCATATTTCCTCCGCTCTACTCCTCATTGATGTCGGAGGAACCTCTTGTTCACAACCCTAGCCGCCAACCTCAATCATCAAACTTCTTTTTCCTTTCCTTAAGAACGCGAATAATCCTTACTTTTCATCACCCTTTGAACGTTCACCAGACATTGTATCTTTTCCCCTCCAGGTTTCGTTGGCCATAGACTAGCGAAAATCACCCCCTTTGGAGGGTGATGGCCATAGAGCAGCATTCACCATCTTCATCTCTTATTCAACCAGCAGATAATAAGGATCCCATCTTTTTCGTCATCCTCCCTCTCATCTGGTAAAGAGAAATGATCACAACTTCACACTCTCTTTTCCTCTATTAGGGTGTGTCAATCCAACCACTTAGATCAAGAAAACAATATTTTTTGCCAAAAGTGATGGTGGAAGCCCTAAAAGTTTGACTGCTTGGGCCAAGTCGATTTAGCAATGACTAGTTTAGGACCAACTAGACTGAAGTGGTTCAACTTCTTGACTCGAAATGGAGCATCACGATGGACCGGCTCGGACCAACCTGGATTTTTCCTCTGCCTCGTACGTCTCAGCTTTGAATTGCACTACTTCCTCCTTAATGATTTCTACCTTCGGGCTTCATTTTACTAATTGGCAATTCAGCCCCCTACCCCCTCTCCCAGTGCAACTCTTTCATTTTATCAATGAAATTAAGTGAATGAAAGGAGAAAATAGAATCGTGATGGAAAGAAGAAAAAACTAAAGTACTTTTAGATTGTTAATTGTAAGGCTTCTTTATAAATTTTGTGTTTTGGATTTTTCTTTATAAATTGTGTGGAGTGGTCCAGTGGTCAAGAAGACCTCGTGGAATTTTGAGGCGATGAATTCAATTTATGGTGGCCACCTACTTAGGAATTAATTTTTTACGTGTTTCCTTGACATTTAAATTTTTTGGGATCATGCAGTATGTCTTGTGACAATAGTCGAGGTGCTCGCTAGCTGGCCTGAACAGACACAGATATCAAAAAGAAAAAAAATGCATTTAAAGGACAAGTGATGTTTTGTCTATATTGGATTTAAATGAACTCACAACTTTATTTTTAGTTCACTATGTGAGTTAGATTTAAACACTAATTATATTTTTATTTTAATTATTTTTCATAGTTAGTATAAAGAACTAAAATATTTTGGATTTGATCTTTTAATATTATATGATAAAAACTAAATGAATAATGTGTCATCGATGTATTTGTGTCCTACATTTTCAAAAAATAGTGTGGCACTATGTTTTTGTCGTGTACGGAAACCCTTGTCCGTGCTTCTTAGGTTTTCAGAATTCAGTCAGCTAATAATTAAGGATTCATTATTCCTATTTCCTCATGAGTCATGTCAACTAAGTGAATCTAGTCTTTAGAGAATGCTGTTTCTTTTATCTTGGGCTTATCTTTGATTAAATTTATTATATTTTCTTGACCGTACAGGGATTTGATGAGTACATGAATTTAGTTCTCGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGCAAAAAGACACTCGGTATACCTTTTTCTCCCCTAATTTCTTGTTGCCTTCTCTCTAATTCATTGAAGTATCTGAAATGCTTTCTTCTTTTTCCCTCTTCAGGGAGGATTCTTCTTAAAGGAGACAATATTACGTTAATGATGAATACGTAAGTGAAATTGAACTTGCTCTTCCTCTCCATTCTTCTTCACCATCTAATTGTTTTTTCTCCTTTTAAAATTCAGGGGGAAATGATGACCATCCCGAAGAATAGATTATTGAGATTTGAGAGAGTTTTCATTTCCTTTGTATGGCGAACTAGCTTCTGTTTGGAGTTGTATCTTTCTACATTTTAAGACATCAATGATTAACTAGTTATTGGGATGTATAATGTTATATTGCTGGTGGTAGGTAATATCCTTTTATGTGGACTCCTTTTAATTTGTCGTCCTTATAATTGATTGTTTACACCTTCAAATCCTTGAGTTTTTGAAACTATGACATTTGGGTCCCTTGAATCCTAAACTATATAGATAGTGGAGCATTGTTTGGATTTTATTTTAGGAGAGATATTGGTTTCACTGATTTTTTTTATTGGGCCTCAACTCAACCTACTCTCTTCATCCTTGGAGAAAAAAGCTTTACCAACCTGTGTAAAAGATTGATTACCATCCTATGTTGCGATGGTGTGCTCTAAATATTACTCCATAGAGCCCTTCGGCACAACTTTGTAAGAAAAATTACACTCAGATATCTTTGCTCAAGGGAATGGTTTTGGGTATGCAATCCTTAAACTTAATATCAGCCCAAACTCTCCTGCCGTATTGGTATTCGAGTTCATACCGTTGTCCAGGATAGAAAACCACTTACATAAGGCCCATAGCCCCATAGGCAGTGTTTGGTGTGGGGTCCTAAATTATTCCCTTCCCATGATAATCTATGAGCAGTAAATTTGATACACTGCTGTTCTGCTTTTGTCGTTTTTACATGATGTAGGCCAAATCTCAAAGGAAAGCGAAGCGGGTAAATGACAGTTATCCGTTAATAGCCTTTTTACCAGGAGGCATACCTGAGCAGCACCAGGATGGTGGGAAAGAGAATTTTTGAGATAACAGAAGTGAAGGTGGTGGGACACATGGGGTCAGGGAATCGCATCCCTCAGGTCATGTAACCCTTTACTCTCTCTGCTTTCAACTATAGTATGTGAAAAAGCATGTATACCCTTGAGTCAAGTCGAGTGCGCCATTGCATTTGTTCTTCTTTTACATTTTATTGGTGACTGACTCATTCTCCACACATATCAATTCCCTCCCTCTCTCTTTCTTGGTGCAATACGGCCTTTCATTCCATTCTTGTCTTTTTCCCCCACCTTGTTTGGTGCCTTCATTGACACATTCCATAAACCCCCCTTCTATCCCTCTCTCTTATGATTGGGGAAATGCATGATTGTTTCATAGTGCTTGACACAACATGAAAACATCACCTTTATTTTATTTTAATCAGGCTCTAGCTAATATCACTGCTTGCTATTAGATTTGACTGATTAACTTTCTTTATTTTTGGTACGTTTTCTTATAACCCTAGTAGGCATTGTTGTGTTATCATTTTGAGATAGCAACTGTCCATAAGATATAGAATAATACGATTACGTAGCCCTCCGATTCTTTGGGAAGCTTGGCTTTAACTTATACCCTTGCCCATGTGAGTTTAGTGTATGCTTTCAGAAAAATGGGGTCTCAAATAATACACTAGCACCTAGAAAAGATAAATGCCCCTAA

mRNA sequence

ATGGCGAGCACGAAAGTGCAGAGGATTATGACCCAGCCGATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCTCAGGATCGAAGGCCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTCGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGCAAAAAGACACTCGGTATACCTTTTTCTCCCCTAATTTCTTGTTGCCTTCTCTCTAATTCATTGAAGAGACAATATTACGTTAATGATGAATACGTAAATTTGAGAGAGTTTTCATTTCCTTTGTATGGCGAACTAGCTTCTGGAATCGCATCCCTCAGGTCATGTAACCCTTTACTCTCTCTGCTTTCAACTATAGTATCCCTCCGATTCTTTGGGAAGCTTGGCTTTAACTTATACCCTTGCCCATGTGAGTTTAGTGTATGCTTTCAGAAAAATGGGGTCTCAAATAATACACTAGCACCTAGAAAAGATAAATGCCCCTAA

Coding sequence (CDS)

ATGGCGAGCACGAAAGTGCAGAGGATTATGACCCAGCCGATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCTCAGGATCGAAGGCCGAATTATTGGATTTGATGAGTACATGAATTTAGTTCTCGATGATGCTGAGGAAGTTAATGTTAAGAAAAAGAGCAAAAAGACACTCGGTATACCTTTTTCTCCCCTAATTTCTTGTTGCCTTCTCTCTAATTCATTGAAGAGACAATATTACGTTAATGATGAATACGTAAATTTGAGAGAGTTTTCATTTCCTTTGTATGGCGAACTAGCTTCTGGAATCGCATCCCTCAGGTCATGTAACCCTTTACTCTCTCTGCTTTCAACTATAGTATCCCTCCGATTCTTTGGGAAGCTTGGCTTTAACTTATACCCTTGCCCATGTGAGTTTAGTGTATGCTTTCAGAAAAATGGGGTCTCAAATAATACACTAGCACCTAGAAAAGATAAATGCCCCTAA

Protein sequence

MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGIPFSPLISCCLLSNSLKRQYYVNDEYVNLREFSFPLYGELASGIASLRSCNPLLSLLSTIVSLRFFGKLGFNLYPCPCEFSVCFQKNGVSNNTLAPRKDKCP

Homology

[Close]

BLAST of Sed0019676 vs. NCBI nr
Match: KAF3452842.1 (hypothetical protein FNV43_RR03275 [Rhamnella rubrinervis])

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-29
Identity = 76/98 (77.55%), Postives = 81/98 (82.65%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLGIPFSPLISCCLLSNSLKRQYYVNDEYV 99
          NVKKKSKK+LG              S +RQ+  +DE+V
Sbjct: 61 NVKKKSKKSLGGK----------DTSERRQHNSDDEHV 88

[Close]

BLAST of Sed0019676 vs. NCBI nr
Match: THU44387.1 (hypothetical protein C4D60_Mb02t06860 [Musa balbisiana])

HSP 1 Score: 140.6 bits (353), Expect = 1.3e-29
Identity = 77/112 (68.75%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLD+AEE+
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEL 60

Query: 61  NVKKKSKKTLGIPFSPLISCCLLSNSLKRQYYVNDEYVNLREFSFPLYGELA 113
           NVKKK++K L   F      C   +   RQ+ ++DEYV + ++  PL   LA
Sbjct: 61  NVKKKTRKPLVYSF-----WCREDSVEGRQHNLDDEYVRVNDY-MPLLDYLA 106

[Close]

BLAST of Sed0019676 vs. NCBI nr
Match: XP_003597961.1 (small nuclear ribonucleoprotein E [Medicago truncatula] >XP_003615807.1 small nuclear ribonucleoprotein E [Medicago truncatula] >XP_019463643.1 PREDICTED: small nuclear ribonucleoprotein E-like [Lupinus angustifolius] >AES68212.1 small nuclear ribonucleoprotein [Medicago truncatula] >AES98765.1 small nuclear ribonucleoprotein [Medicago truncatula] >AFK37227.1 unknown [Medicago truncatula] >RHN56601.1 putative small nuclear ribonucleoprotein E [Medicago truncatula] >RHN76562.1 putative small nuclear ribonucleoprotein E [Medicago truncatula])

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-29
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLG 72
          NVKKKSKKTLG
Sbjct: 61 NVKKKSKKTLG 71

[Close]

BLAST of Sed0019676 vs. NCBI nr
Match: XP_022135003.1 (small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022929068.1 small nuclear ribonucleoprotein E-like [Cucurbita moschata] >XP_022972120.1 small nuclear ribonucleoprotein E-like [Cucurbita maxima] >XP_023529379.1 small nuclear ribonucleoprotein E-like [Cucurbita pepo subsp. pepo] >KAG6587777.1 Small nuclear ribonucleoprotein E, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 1.7e-29
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLG 72
          N+KKKSKKTLG
Sbjct: 61 NIKKKSKKTLG 71

[Close]

BLAST of Sed0019676 vs. NCBI nr
Match: KAG2404782.1 (CBL-interacting serine/threonine-protein [Vigna angularis])

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-29
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLG 72
          N+KKKSKKTLG
Sbjct: 61 NIKKKSKKTLG 71

[Close]

BLAST of Sed0019676 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.9e-22
Identity = 48/67 (71.64%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLG 72
          KS+K LG
Sbjct: 69 KSRKQLG 75

[Close]

BLAST of Sed0019676 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.9e-22
Identity = 48/67 (71.64%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLG 72
          KS+K LG
Sbjct: 69 KSRKQLG 75

[Close]

BLAST of Sed0019676 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.9e-22
Identity = 48/67 (71.64%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLG 72
          KS+K LG
Sbjct: 69 KSRKQLG 75

[Close]

BLAST of Sed0019676 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.9e-22
Identity = 48/67 (71.64%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLG 72
          KS+K LG
Sbjct: 69 KSRKQLG 75

[Close]

BLAST of Sed0019676 vs. ExPASy Swiss-Prot
Match: A1XQR9 (Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.9e-22
Identity = 48/67 (71.64%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 5  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKK 64
          KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K 
Sbjct: 9  KVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT 68

Query: 65 KSKKTLG 72
          KS+K LG
Sbjct: 69 KSRKQLG 75

[Close]

BLAST of Sed0019676 vs. ExPASy TrEMBL
Match: A0A4S8I8U0 (Small nuclear ribonucleoprotein E OS=Musa balbisiana OX=52838 GN=C4D60_Mb02t06860 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 6.2e-30
Identity = 77/112 (68.75%), Postives = 88/112 (78.57%), Query Frame = 0


Query: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
           MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLD+AEE+
Sbjct: 1   MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEL 60

Query: 61  NVKKKSKKTLGIPFSPLISCCLLSNSLKRQYYVNDEYVNLREFSFPLYGELA 113
           NVKKK++K L   F      C   +   RQ+ ++DEYV + ++  PL   LA
Sbjct: 61  NVKKKTRKPLVYSF-----WCREDSVEGRQHNLDDEYVRVNDY-MPLLDYLA 106

[Close]

BLAST of Sed0019676 vs. ExPASy TrEMBL
Match: G7IMA2 (Small nuclear ribonucleoprotein E OS=Medicago truncatula OX=3880 GN=11406496 PE=2 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 8.1e-30
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLG 72
          NVKKKSKKTLG
Sbjct: 61 NVKKKSKKTLG 71

[Close]

BLAST of Sed0019676 vs. ExPASy TrEMBL
Match: A0A6J1I7N4 (Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111470751 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 8.1e-30
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLG 72
          N+KKKSKKTLG
Sbjct: 61 NIKKKSKKTLG 71

[Close]

BLAST of Sed0019676 vs. ExPASy TrEMBL
Match: A0A6J1C3K6 (Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111007114 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 8.1e-30
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLG 72
          N+KKKSKKTLG
Sbjct: 61 NIKKKSKKTLG 71

[Close]

BLAST of Sed0019676 vs. ExPASy TrEMBL
Match: A0A6J1EQZ2 (Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111435765 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 8.1e-30
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60

Query: 61 NVKKKSKKTLG 72
          N+KKKSKKTLG
Sbjct: 61 NIKKKSKKTLG 71

[Close]

BLAST of Sed0019676 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-30
Identity = 64/71 (90.14%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKTLG 72
          ++KKK++K LG
Sbjct: 61 SIKKKTRKPLG 71

[Close]

BLAST of Sed0019676 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 128.3 bits (321), Expect = 6.2e-30
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKTLG 72
          ++KK ++K LG
Sbjct: 61 SIKKNTRKPLG 71

[Close]

BLAST of Sed0019676 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 128.3 bits (321), Expect = 6.2e-30
Identity = 63/71 (88.73%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKKSKKTLG 72
          ++KK ++K LG
Sbjct: 61 SIKKNTRKPLG 71

The following BLAST results are available for this feature:

BLAST of Sed0019676 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3452842.1	1.3e-29	77.55	hypothetical protein FNV43_RR03275 [Rhamnella rubrinervis]	[more]
THU44387.1	1.3e-29	68.75	hypothetical protein C4D60_Mb02t06860 [Musa balbisiana]	[more]
XP_003597961.1	1.7e-29	98.59	small nuclear ribonucleoprotein E [Medicago truncatula] >XP_003615807.1 small nu...	[more]
XP_022135003.1	1.7e-29	98.59	small nuclear ribonucleoprotein E-like [Momordica charantia] >XP_022929068.1 sma...	[more]
KAG2404782.1	2.2e-29	97.18	CBL-interacting serine/threonine-protein [Vigna angularis]	[more]

BLAST of Sed0019676 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4FUI2	7.9e-22	71.64	Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1	[more]
P62303	7.9e-22	71.64	Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1	[more]
P62304	7.9e-22	71.64	Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1	[more]
P62305	7.9e-22	71.64	Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1	[more]
A1XQR9	7.9e-22	71.64	Small nuclear ribonucleoprotein E OS=Sus scrofa OX=9823 GN=SNRPE PE=3 SV=1	[more]

BLAST of Sed0019676 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4S8I8U0	6.2e-30	68.75	Small nuclear ribonucleoprotein E OS=Musa balbisiana OX=52838 GN=C4D60_Mb02t0686...	[more]
G7IMA2	8.1e-30	98.59	Small nuclear ribonucleoprotein E OS=Medicago truncatula OX=3880 GN=11406496 PE=...	[more]
A0A6J1I7N4	8.1e-30	98.59	Small nuclear ribonucleoprotein E OS=Cucurbita maxima OX=3661 GN=LOC111470751 PE...	[more]
A0A6J1C3K6	8.1e-30	98.59	Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111007114...	[more]
A0A6J1EQZ2	8.1e-30	98.59	Small nuclear ribonucleoprotein E OS=Cucurbita moschata OX=3662 GN=LOC111435765 ...	[more]

BLAST of Sed0019676 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30330.1	1.6e-30	90.14	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.1	6.2e-30	88.73	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.2	6.2e-30	88.73	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 19..82 e-value: 1.4E-7 score: 41.2
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 20..71 e-value: 1.7E-11 score: 43.7
None	No IPR available	GENE3D	2.30.30.100		coord: 1..74 e-value: 1.6E-32 score: 113.2
None	No IPR available	PANTHER	PTHR11193:SF10	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 1..71
IPR027078	Small nuclear ribonucleoprotein E	PANTHER	PTHR11193	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 1..71
IPR027078	Small nuclear ribonucleoprotein E	CDD	cd01718	Sm_E	coord: 7..71 e-value: 7.06853E-45 score: 140.767
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 12..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019676.1	Sed0019676.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005682	U5 snRNP
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding