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Sed0019578 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCTAGCAACACTGGCTCCCCTTGTGGAGCATGCAAGTTTCTGCGTCGAAAATGCGCGCCCGATTGCATCTTCGCTCCTTACTTTTGCTCGGAACAAGGCCCCGCTACCTTCGCCGCCATTCATAGGGTGTTTGGAGCTAGTAATCTCTCTAAATTGCTCCTCCATGTCCCCGTTCCTCATCGCGCCGAGGCTGTTCTTACCATTGCATATCAAGCTCAAGCTCGCATTCATGATCCTGTTTATGGCTGTGTTTCTCATATCTTTTCTCTCCAACAACAGGTTTCTTTTGGGAGTTTGGATTCTATTTCAATCTAATATATATACGCTCTACTATGATTGATTTACGAATTGATTCTGTTAGTTGTTTTCTTTTCAATTAATATTGATTAATCGGTACTAGTCGGGTTGGATTACTTTCTAAAAAAACATATTCCGTTGCCGGGACTTGAACCCGGGTCTTTCGGGTGAGAGCCGAATATCCTAACCAACTAGACTACAACGGATACTTGTATCAGGTTGGATTACTTTTCTAAACTGTACTAGTAAGAAATGGAATAAAAGATTGAATTTTTTTGGTAACCCATTTGAGTTTTCTAGCTTTTGGACACTTATTAGAGGTGGTTGTAACAAATGTTTCAAATGTTGTTGATGGAATTTTTGTTTTGTTTGTGTGGGCGATGAAGGTGGCATATTTAGATAAGCCCGTCCACCACTTGAGAAGATGCCATTATTTTATTTGTTTTTTGGTGCTTTAATTTTAATATGTATATCATAACTATGACATTGCCTCCATTGCGTTTAATTGGAGAGCATTTTTGTAACCTCTATGGACTTTTGGTATGCCCCTGGCATACCATAATCTAAATATCTTTTTCGAAAAAAAGGTGGCATATTTAGATATAAACACTATTATTATTACATTAAGGAATTGTTTTCCAGATCGTCCTACTAATCGTTTTCTTTCTCAATTAATATTGATAATCAGCTTTTGAATTGGACTTTGTTTATATACTTTTACCAATAAAAAATGGTTTAGAATATGAATAAAAGGTTCAATTTTTTCCTAACCCCATTTGAGTTTTTAGCTTTTGGAATTAGTGTGGAGGTTGTTGCAATGCTTTCAAAATGTTCTTGTGGGTTTTTGGATCAAGATCATATAGCTAGAAATTTTCTTACAAAGTTCTAATGAACTTTTCATAGAAATTTTGTTGGTATTATCTTAAATGGGGGGTTTTAATTTGTTTGTGTTTTTGAAGGTGGCATACTTACAAACACAGCTGATGCAAACCAAGGCTCAAGTAGCACAAACCCTGATTGATTCAGGAAGAAACATGGAAATATCTCAATGGACAGACAACCTCAATTTCTCCAATGGAATCCCAAATTTTCCAAATAATGATGAAACTCAAAATATGAACCTTGCAGTTTCTCCTCAGAGCTCTTTGGAATCAGCTGCCAACAATGATGAAGCTTTGTTCATGAATTTTCAAGAGAGCCAAAGCAGATCCCCACAAGCTCAATTTCAACAATTTCCTAGAAAATTAAGACCAGCTTCTTGTCATGGTGATGTTGGAGAGCTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAA ATGGCTTCTAGCAACACTGGCTCCCCTTGTGGAGCATGCAAGTTTCTGCGTCGAAAATGCGCGCCCGATTGCATCTTCGCTCCTTACTTTTGCTCGGAACAAGGCCCCGCTACCTTCGCCGCCATTCATAGGGTGTTTGGAGCTAGTAATCTCTCTAAATTGCTCCTCCATGTCCCCGTTCCTCATCGCGCCGAGGCTGTTCTTACCATTGCATATCAAGCTCAAGCTCGCATTCATGATCCTGTTTATGGCTGTGTTTCTCATATCTTTTCTCTCCAACAACAGGTGGCATACTTACAAACACAGCTGATGCAAACCAAGGCTCAAGTAGCACAAACCCTGATTGATTCAGGAAGAAACATGGAAATATCTCAATGGACAGACAACCTCAATTTCTCCAATGGAATCCCAAATTTTCCAAATAATGATGAAACTCAAAATATGAACCTTGCAGTTTCTCCTCAGAGCTCTTTGGAATCAGCTGCCAACAATGATGAAGCTTTGTTCATGAATTTTCAAGAGAGCCAAAGCAGATCCCCACAAGCTCAATTTCAACAATTTCCTAGAAAATTAAGACCAGCTTCTTGTCATGGTGATGTTGGAGAGCTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAA ATGGCTTCTAGCAACACTGGCTCCCCTTGTGGAGCATGCAAGTTTCTGCGTCGAAAATGCGCGCCCGATTGCATCTTCGCTCCTTACTTTTGCTCGGAACAAGGCCCCGCTACCTTCGCCGCCATTCATAGGGTGTTTGGAGCTAGTAATCTCTCTAAATTGCTCCTCCATGTCCCCGTTCCTCATCGCGCCGAGGCTGTTCTTACCATTGCATATCAAGCTCAAGCTCGCATTCATGATCCTGTTTATGGCTGTGTTTCTCATATCTTTTCTCTCCAACAACAGGTGGCATACTTACAAACACAGCTGATGCAAACCAAGGCTCAAGTAGCACAAACCCTGATTGATTCAGGAAGAAACATGGAAATATCTCAATGGACAGACAACCTCAATTTCTCCAATGGAATCCCAAATTTTCCAAATAATGATGAAACTCAAAATATGAACCTTGCAGTTTCTCCTCAGAGCTCTTTGGAATCAGCTGCCAACAATGATGAAGCTTTGTTCATGAATTTTCAAGAGAGCCAAAGCAGATCCCCACAAGCTCAATTTCAACAATTTCCTAGAAAATTAAGACCAGCTTCTTGTCATGGTGATGTTGGAGAGCTCCAAGCTTTGGCCCTCAGAATGATGAGAAACTAA MASSNTGSPCGACKFLRRKCAPDCIFAPYFCSEQGPATFAAIHRVFGASNLSKLLLHVPVPHRAEAVLTIAYQAQARIHDPVYGCVSHIFSLQQQVAYLQTQLMQTKAQVAQTLIDSGRNMEISQWTDNLNFSNGIPNFPNNDETQNMNLAVSPQSSLESAANNDEALFMNFQESQSRSPQAQFQQFPRKLRPASCHGDVGELQALALRMMRN Homology
BLAST of Sed0019578 vs. NCBI nr
Match: XP_038888851.1 (LOB domain-containing protein 16-like [Benincasa hispida]) HSP 1 Score: 290.8 bits (743), Expect = 9.5e-75 Identity = 166/219 (75.80%), Postives = 180/219 (82.19%), Query Frame = 0
BLAST of Sed0019578 vs. NCBI nr
Match: XP_008461877.1 (PREDICTED: LOB domain-containing protein 16 [Cucumis melo] >TYK06450.1 LOB domain-containing protein 16 [Cucumis melo var. makuwa]) HSP 1 Score: 271.9 bits (694), Expect = 4.6e-69 Identity = 163/223 (73.09%), Postives = 178/223 (79.82%), Query Frame = 0
BLAST of Sed0019578 vs. NCBI nr
Match: KAE8650674.1 (hypothetical protein Csa_009642 [Cucumis sativus]) HSP 1 Score: 271.2 bits (692), Expect = 7.8e-69 Identity = 162/219 (73.97%), Postives = 177/219 (80.82%), Query Frame = 0
BLAST of Sed0019578 vs. NCBI nr
Match: XP_004152037.2 (LOB domain-containing protein 16 [Cucumis sativus]) HSP 1 Score: 271.2 bits (692), Expect = 7.8e-69 Identity = 162/219 (73.97%), Postives = 177/219 (80.82%), Query Frame = 0
BLAST of Sed0019578 vs. NCBI nr
Match: XP_022967414.1 (LOB domain-containing protein 16-like [Cucurbita maxima]) HSP 1 Score: 270.4 bits (690), Expect = 1.3e-68 Identity = 153/211 (72.51%), Postives = 171/211 (81.04%), Query Frame = 0
BLAST of Sed0019578 vs. ExPASy Swiss-Prot
Match: Q9SLB7 (LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 9.9e-51 Identity = 122/237 (51.48%), Postives = 154/237 (64.98%), Query Frame = 0
BLAST of Sed0019578 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 1.0e-39 Identity = 77/114 (67.54%), Postives = 94/114 (82.46%), Query Frame = 0
BLAST of Sed0019578 vs. ExPASy Swiss-Prot
Match: Q5UG13 (LOB domain-containing protein CRL1 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL1 PE=1 SV=1) HSP 1 Score: 157.9 bits (398), Expect = 1.3e-37 Identity = 74/106 (69.81%), Postives = 86/106 (81.13%), Query Frame = 0
BLAST of Sed0019578 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2) HSP 1 Score: 157.5 bits (397), Expect = 1.6e-37 Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = 0
BLAST of Sed0019578 vs. ExPASy Swiss-Prot
Match: Q9SLB6 (LOB domain-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=LBD17 PE=2 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 1.1e-36 Identity = 74/112 (66.07%), Postives = 87/112 (77.68%), Query Frame = 0
BLAST of Sed0019578 vs. ExPASy TrEMBL
Match: A0A5D3C536 (LOB domain-containing protein 16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold718G00040 PE=3 SV=1) HSP 1 Score: 271.9 bits (694), Expect = 2.2e-69 Identity = 163/223 (73.09%), Postives = 178/223 (79.82%), Query Frame = 0
BLAST of Sed0019578 vs. ExPASy TrEMBL
Match: A0A1S3CG76 (LOB domain-containing protein 16 OS=Cucumis melo OX=3656 GN=LOC103500368 PE=3 SV=1) HSP 1 Score: 271.9 bits (694), Expect = 2.2e-69 Identity = 163/223 (73.09%), Postives = 178/223 (79.82%), Query Frame = 0
BLAST of Sed0019578 vs. ExPASy TrEMBL
Match: A0A0A0LAE8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G398920 PE=3 SV=1) HSP 1 Score: 271.2 bits (692), Expect = 3.8e-69 Identity = 162/219 (73.97%), Postives = 177/219 (80.82%), Query Frame = 0
BLAST of Sed0019578 vs. ExPASy TrEMBL
Match: A0A6J1HWM7 (LOB domain-containing protein 16-like OS=Cucurbita maxima OX=3661 GN=LOC111466950 PE=3 SV=1) HSP 1 Score: 270.4 bits (690), Expect = 6.4e-69 Identity = 153/211 (72.51%), Postives = 171/211 (81.04%), Query Frame = 0
BLAST of Sed0019578 vs. ExPASy TrEMBL
Match: A0A6J1K8R5 (LOB domain-containing protein 16-like OS=Cucurbita maxima OX=3661 GN=LOC111491158 PE=3 SV=1) HSP 1 Score: 269.2 bits (687), Expect = 1.4e-68 Identity = 148/212 (69.81%), Postives = 167/212 (78.77%), Query Frame = 0
BLAST of Sed0019578 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 ) HSP 1 Score: 201.4 bits (511), Expect = 7.0e-52 Identity = 122/237 (51.48%), Postives = 154/237 (64.98%), Query Frame = 0
BLAST of Sed0019578 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 ) HSP 1 Score: 164.9 bits (416), Expect = 7.3e-41 Identity = 77/114 (67.54%), Postives = 94/114 (82.46%), Query Frame = 0
BLAST of Sed0019578 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 ) HSP 1 Score: 157.5 bits (397), Expect = 1.2e-38 Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = 0
BLAST of Sed0019578 vs. TAIR 10
Match: AT2G42440.1 (Lateral organ boundaries (LOB) domain family protein ) HSP 1 Score: 154.8 bits (390), Expect = 7.6e-38 Identity = 74/112 (66.07%), Postives = 87/112 (77.68%), Query Frame = 0
BLAST of Sed0019578 vs. TAIR 10
Match: AT4G00220.1 (Lateral organ boundaries (LOB) domain family protein ) HSP 1 Score: 148.7 bits (374), Expect = 5.4e-36 Identity = 72/110 (65.45%), Postives = 86/110 (78.18%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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