Sed0019546 (gene) Chayote v1

Overview
NameSed0019546
Typegene
OrganismSechium edule (Chayote v1)
Descriptionpentatricopeptide repeat-containing protein At2g30100, chloroplastic
LocationLG05: 45571110 .. 45574251 (+)
RNA-Seq ExpressionSed0019546
SyntenySed0019546
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTCTTGCAGTGGCGGCAAAAATCGCTGCCATTGCGACCACTCACTCCGATTTCCACCGTCGCCATCGCTCAATCCTCCGTCTCGAAATTAGGGTTTCATTTTTCCGATCATCGATTCAATTCTCCGATTCTTCAACAGGTTTTTCTGTTCGATGTTTGCTCAATCTCTTCCGCTTTGTATTTGGTTTTGTTTTCTTTTTGCTAATCGAGTTCTGAATTGATGCGGTGGAAACCCTAATGTTCTGATTTTGTTTCGAGAAGTTTCTGGAGTCGGTGTGAATGATTTTGTGTCTTGATTTCTGTATTTCATTCGGTTTTTGGACTTTTCTGAACTCGGTGGAGTGGAGATAGATACCTTGACGTTTAAGTTCGTTGATTATTTGAAATTTTAGTTTGGATTTGGTGATTTGAGTTACAAGTACGAAATGGTTTGTGCTCAGGGATCTACTACGTTAACTCAATTTGGATTTTCGTTTTCTTTATCTTCTGGACTGAAAACTGAGAGGCATGGATTTTTTACTCCCCGATTGTATAGACGTTCTCCGGTTAAATTTAGCTTTATGGTTCCTCTTATTACTTGCAACCACCAGAATTCTACTTTTTCTGGTTCGAAAGCAGGTAAGTTTCGGGACCTGAGGTTGTTCAAATCGGTTGAGTTGGATCAGTTTATTACGAGTGATGATGAAGACGAAATGGGAGATGGGTTTTTTGAGGCAATTGAGGAATTGGAACGAATGACCAGGGAACCATCGGATGTTCTTGGGGAAATGAATGACCGCCTTTCGGCGAGGGAGTTTCAGCTCGTGCTCGTGTACTTCTCTCAAGAAGGGAGAGATTCTTGGTGTGCTCTTGAGGTTTTCGAGTGGCTCCAAAAAGAGAATCGGGTTGACAAGGAGACCATGGAGTTGATGGTGTCTATTATGTGCAGTTGGATTAAGAAGCTAGTTGAGGGAGATCATAACGTCGGAGATGTGGTTGACCTTCTCGTTGATATGGATTGTGTAGGTTTGAAGCCCCATTTTAGCATGATAGAAAAGATCATCTCTTTGTACTGGGAAATGGACGAGAAGGAGAAAGCAATTTCATTTGTAAAAGAGGTCTTGGGACGCAAGCTTGCTTTTATGAAGGACGATTGGGAGGGGCATAAAGGGGGACCTAGCGGTTATCTCGCATGGAAGATGATGGTAAGCCTTCGACTAATCTTGAATTTCATATTTTTTGCCATTAATCATGCTTAAGAGTCAAGACTTTATTCTTTTGATGTGTCTGTCTGTAACATGAAAACTCATATGACATGTAAGTTAAGCTCTTCAATCGTTGTTTACTAGCTTTGGGTGTCATATTTTGAATCCTGAATTTCTAATCGCAGAGATTTCTTACTCTGCCTTCTTTACCTCACTGCTCTAGTTTACTCAATTCGGTTGTTAGTGTCTTGATCTTATTGGATTTTGATTATGAGCACTGCATAGAGCACCAGGTTTTTGTTGCGGCGACTTTAGTCCATGTGATAAAAGGATGTTTTCCGGCATTGTTTTTGTCTAGTCACAATTGAAGGTGTTCTGAAAGAACTGTACAAGTTCTTACCATAGATTTAGATGGGTGTCCTAGGCATTATGGTTTGACTCTTGAGATATATGGTTAAGCTGCGTTCTAATGTGGTTAAGCATGTTTGAATCTACTATTATGTTAGTATTGGACCTAATTTTGTTTCTGCATATTAGGATTTGGAAAAACCATGAACATCCTGCTTAGGATTTTTTTTTTCACTGGAGTTTTGTTTATTTCATTCATTGAAAACTTTAAGGCTCATTTTTTTTCATTGTCATTTTCTTTGGAGCTTACTCTGCCATTAGTCAAAGTGTAACTCTCTCTGGTATCTTCTACAAGTCATTTTTCAGTTGTTGAATTTCCTTTCAATGTTTTATTGGACTTCCATATCATATACATCACTTTTGATGTATTCTTTCTTAGATTAATAGCGCCCCTACTTATTTCATTTATATTCAAACAACATTTAGTAATTTTATGAGGCCAAGTTAATATAATTTTTTAATTGTAACTATAACACATTGCCGGTGCTTTTGTTCCCTTCGCCAGTAATAGTAGTGGATTAGTTGGCCGAGTATTTTCAATAAGTATTTTCAAATTGTTATGTTTATTCAGTAGACTCCAAGTGAAAATTCAACTGCTAATGATGAAAATCATTTCTCTTAGGTTGGTGGTGACTATAAGGGTGCAGTGAAAATGGTGCTGCATCTTAGAGAATCTGGATTAAAGCCAGAGGTTTATAGCTACCTTGTTGCCATGACTGCTGTCGTAAAAGAGTTGAATGAATTAGCAAAAGCTCTTCGCAAACTCAAAAGTTATGCAAAGAATGGAGTAGTGGCTGAACTCGATAAAGACAGTGTCAAACTTGTTGAGCGGTATCAGACGGAGCTTGTAGCTGATGGTGTACAGTTATCCAGATGGGTGCTTGAAGAGGGAAACTCTTCAATTCATGGGGTGGTGCATGAGAGACTCCTAGCTATGTACATTTGTGCCGGTCAAGGAGTTGAGGCAGAGAGACAGCTTTGGGAAATGAAGCTTGTAGGTAAGGAGGCCGATGCTGATCTCTACGATATCGTGCTTGCCATTTGTGCTTCACAGAAGCAGACTAGAGCCATGAGCCGGTTGCTAACTAGGATCGAGATTACGAGTCCCCTGCTTAAGAAGAAGAGTATGACATGGCTACTCAGGGGTTACATAAAAGGAAGCCATTTCCATGATGCAGCAGAAACATTAGTAAAAATGGTCAGCTTGGGTTTTCTCCCAGAGTACTTGGACAGAGTAGCTGTGCTGCAAGGTCTAAGAAAACAGATTTGGGAACCCGAAAACGTCGAAACTTACTTCAAGCTTTGCAAGTGCCTCTCTGATGCTAATCTAATTGGACCTAGTCTTGTATATTTGCACATACAAAAAAGTAAGCTTTGGGTCATTAAAATGCTTTGAGCTCATCAATATCTCTCTGCACAGGCAGCTAATAAAGTGGAACAAAAGATCATCTCTCACAGCACCAGCACTTTTTTGGGTGCTTTTACATGATGATTTTGTATAGTTTGAAGGACCTGCTTCTTCGAGGCGGTTGAGGTTACTCTGGTAGCTCT

mRNA sequence

GTCTTGCAGTGGCGGCAAAAATCGCTGCCATTGCGACCACTCACTCCGATTTCCACCGTCGCCATCGCTCAATCCTCCGTCTCGAAATTAGGGTTTCATTTTTCCGATCATCGATTCAATTCTCCGATTCTTCAACAGGTTTTTCTGTTCGATGTTTGCTCAATCTCTTCCGCTTTGTATTTGGTTTTGTTTTCTTTTTGCTAATCGAGTTCTGAATTGATGCGGTGGAAACCCTAATGTTCTGATTTTGTTTCGAGAAGTTTCTGGAGTCGGTGTGAATGATTTTGTGTCTTGATTTCTGTATTTCATTCGGTTTTTGGACTTTTCTGAACTCGGTGGAGTGGAGATAGATACCTTGACGTTTAAGTTCGTTGATTATTTGAAATTTTAGTTTGGATTTGGTGATTTGAGTTACAAGTACGAAATGGTTTGTGCTCAGGGATCTACTACGTTAACTCAATTTGGATTTTCGTTTTCTTTATCTTCTGGACTGAAAACTGAGAGGCATGGATTTTTTACTCCCCGATTGTATAGACGTTCTCCGGTTAAATTTAGCTTTATGGTTCCTCTTATTACTTGCAACCACCAGAATTCTACTTTTTCTGGTTCGAAAGCAGGTAAGTTTCGGGACCTGAGGTTGTTCAAATCGGTTGAGTTGGATCAGTTTATTACGAGTGATGATGAAGACGAAATGGGAGATGGGTTTTTTGAGGCAATTGAGGAATTGGAACGAATGACCAGGGAACCATCGGATGTTCTTGGGGAAATGAATGACCGCCTTTCGGCGAGGGAGTTTCAGCTCGTGCTCGTGTACTTCTCTCAAGAAGGGAGAGATTCTTGGTGTGCTCTTGAGGTTTTCGAGTGGCTCCAAAAAGAGAATCGGGTTGACAAGGAGACCATGGAGTTGATGGTGTCTATTATGTGCAGTTGGATTAAGAAGCTAGTTGAGGGAGATCATAACGTCGGAGATGTGGTTGACCTTCTCGTTGATATGGATTGTGTAGGTTTGAAGCCCCATTTTAGCATGATAGAAAAGATCATCTCTTTGTACTGGGAAATGGACGAGAAGGAGAAAGCAATTTCATTTGTAAAAGAGGTCTTGGGACGCAAGCTTGCTTTTATGAAGGACGATTGGGAGGGGCATAAAGGGGGACCTAGCGGTTATCTCGCATGGAAGATGATGGTTGGTGGTGACTATAAGGGTGCAGTGAAAATGGTGCTGCATCTTAGAGAATCTGGATTAAAGCCAGAGGTTTATAGCTACCTTGTTGCCATGACTGCTGTCGTAAAAGAGTTGAATGAATTAGCAAAAGCTCTTCGCAAACTCAAAAGTTATGCAAAGAATGGAGTAGTGGCTGAACTCGATAAAGACAGTGTCAAACTTGTTGAGCGGTATCAGACGGAGCTTGTAGCTGATGGTGTACAGTTATCCAGATGGGTGCTTGAAGAGGGAAACTCTTCAATTCATGGGGTGGTGCATGAGAGACTCCTAGCTATGTACATTTGTGCCGGTCAAGGAGTTGAGGCAGAGAGACAGCTTTGGGAAATGAAGCTTGTAGGTAAGGAGGCCGATGCTGATCTCTACGATATCGTGCTTGCCATTTGTGCTTCACAGAAGCAGACTAGAGCCATGAGCCGGTTGCTAACTAGGATCGAGATTACGAGTCCCCTGCTTAAGAAGAAGAGTATGACATGGCTACTCAGGGGTTACATAAAAGGAAGCCATTTCCATGATGCAGCAGAAACATTAGTAAAAATGGTCAGCTTGGGTTTTCTCCCAGAGTACTTGGACAGAGTAGCTGTGCTGCAAGGTCTAAGAAAACAGATTTGGGAACCCGAAAACGTCGAAACTTACTTCAAGCTTTGCAAGTGCCTCTCTGATGCTAATCTAATTGGACCTAGTCTTGTATATTTGCACATACAAAAAAGTAAGCTTTGGGTCATTAAAATGCTTTGAGCTCATCAATATCTCTCTGCACAGGCAGCTAATAAAGTGGAACAAAAGATCATCTCTCACAGCACCAGCACTTTTTTGGGTGCTTTTACATGATGATTTTGTATAGTTTGAAGGACCTGCTTCTTCGAGGCGGTTGAGGTTACTCTGGTAGCTCT

Coding sequence (CDS)

ATGGTTTGTGCTCAGGGATCTACTACGTTAACTCAATTTGGATTTTCGTTTTCTTTATCTTCTGGACTGAAAACTGAGAGGCATGGATTTTTTACTCCCCGATTGTATAGACGTTCTCCGGTTAAATTTAGCTTTATGGTTCCTCTTATTACTTGCAACCACCAGAATTCTACTTTTTCTGGTTCGAAAGCAGGTAAGTTTCGGGACCTGAGGTTGTTCAAATCGGTTGAGTTGGATCAGTTTATTACGAGTGATGATGAAGACGAAATGGGAGATGGGTTTTTTGAGGCAATTGAGGAATTGGAACGAATGACCAGGGAACCATCGGATGTTCTTGGGGAAATGAATGACCGCCTTTCGGCGAGGGAGTTTCAGCTCGTGCTCGTGTACTTCTCTCAAGAAGGGAGAGATTCTTGGTGTGCTCTTGAGGTTTTCGAGTGGCTCCAAAAAGAGAATCGGGTTGACAAGGAGACCATGGAGTTGATGGTGTCTATTATGTGCAGTTGGATTAAGAAGCTAGTTGAGGGAGATCATAACGTCGGAGATGTGGTTGACCTTCTCGTTGATATGGATTGTGTAGGTTTGAAGCCCCATTTTAGCATGATAGAAAAGATCATCTCTTTGTACTGGGAAATGGACGAGAAGGAGAAAGCAATTTCATTTGTAAAAGAGGTCTTGGGACGCAAGCTTGCTTTTATGAAGGACGATTGGGAGGGGCATAAAGGGGGACCTAGCGGTTATCTCGCATGGAAGATGATGGTTGGTGGTGACTATAAGGGTGCAGTGAAAATGGTGCTGCATCTTAGAGAATCTGGATTAAAGCCAGAGGTTTATAGCTACCTTGTTGCCATGACTGCTGTCGTAAAAGAGTTGAATGAATTAGCAAAAGCTCTTCGCAAACTCAAAAGTTATGCAAAGAATGGAGTAGTGGCTGAACTCGATAAAGACAGTGTCAAACTTGTTGAGCGGTATCAGACGGAGCTTGTAGCTGATGGTGTACAGTTATCCAGATGGGTGCTTGAAGAGGGAAACTCTTCAATTCATGGGGTGGTGCATGAGAGACTCCTAGCTATGTACATTTGTGCCGGTCAAGGAGTTGAGGCAGAGAGACAGCTTTGGGAAATGAAGCTTGTAGGTAAGGAGGCCGATGCTGATCTCTACGATATCGTGCTTGCCATTTGTGCTTCACAGAAGCAGACTAGAGCCATGAGCCGGTTGCTAACTAGGATCGAGATTACGAGTCCCCTGCTTAAGAAGAAGAGTATGACATGGCTACTCAGGGGTTACATAAAAGGAAGCCATTTCCATGATGCAGCAGAAACATTAGTAAAAATGGTCAGCTTGGGTTTTCTCCCAGAGTACTTGGACAGAGTAGCTGTGCTGCAAGGTCTAAGAAAACAGATTTGGGAACCCGAAAACGTCGAAACTTACTTCAAGCTTTGCAAGTGCCTCTCTGATGCTAATCTAATTGGACCTAGTCTTGTATATTTGCACATACAAAAAAGTAAGCTTTGGGTCATTAAAATGCTTTGA

Protein sequence

MVCAQGSTTLTQFGFSFSLSSGLKTERHGFFTPRLYRRSPVKFSFMVPLITCNHQNSTFSGSKAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLGEMNDRLSAREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGDHNVGDVVDLLVDMDCVGLKPHFSMIEKIISLYWEMDEKEKAISFVKEVLGRKLAFMKDDWEGHKGGPSGYLAWKMMVGGDYKGAVKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRKLKSYAKNGVVAELDKDSVKLVERYQTELVADGVQLSRWVLEEGNSSIHGVVHERLLAMYICAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKKSMTWLLRGYIKGSHFHDAAETLVKMVSLGFLPEYLDRVAVLQGLRKQIWEPENVETYFKLCKCLSDANLIGPSLVYLHIQKSKLWVIKML
Homology
BLAST of Sed0019546 vs. NCBI nr
Match: XP_038901728.1 (pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Benincasa hispida])

HSP 1 Score: 918.3 bits (2372), Expect = 2.9e-263
Identity = 454/510 (89.02%), Postives = 482/510 (94.51%), Query Frame = 0

Query: 1   MVCAQGSTTLTQFGFSFSLSSGLKTERHGFFTPRLYRRSPVKFSFMVPLITCNHQNSTFS 60
           MVCAQG T LTQFGFSFSLSS LKT+RHGF TP+LY   PVKF FMV  I+CN+Q+STFS
Sbjct: 1   MVCAQGFTPLTQFGFSFSLSSALKTDRHGFSTPQLYSPPPVKFCFMVSRISCNYQDSTFS 60

Query: 61  GSKAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLGEMNDRLS 120
            S+AGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVL EMNDRLS
Sbjct: 61  VSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLS 120

Query: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGDHNV 180
           AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEG HNV
Sbjct: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNV 180

Query: 181 GDVVDLLVDMDCVGLKPHFSMIEKIISLYWEMDEKEKAISFVKEVLGRKLAFMKDDWEGH 240
           GDVVDLLVDMDCVGLKPHFSMIEK+ISLYWEM EKEKAISFVKEVLGR LAFMKDDWEGH
Sbjct: 181 GDVVDLLVDMDCVGLKPHFSMIEKVISLYWEMGEKEKAISFVKEVLGRNLAFMKDDWEGH 240

Query: 241 KGGPSGYLAWKMMVGGDYKGAVKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRK 300
           KGGPSGYLAWKMMV GDY+GAVKMVLHLRESGLKPEVY YL+AMTAVVKELNE AKALRK
Sbjct: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLHLRESGLKPEVYCYLIAMTAVVKELNEFAKALRK 300

Query: 301 LKSYAKNGVVAELDKDSVKLVERYQTELVADGVQLSRWVLEEGNSSIHGVVHERLLAMYI 360
           LKSYA++G+VAELDK++V+LVE+YQTEL+ADGV+LS WVLEEG+ SIHGVVHERLLAMYI
Sbjct: 301 LKSYARDGIVAELDKNNVELVEKYQTELLADGVRLSNWVLEEGSFSIHGVVHERLLAMYI 360

Query: 361 CAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKK 420
           CAGQG+EAERQLWEMKLVGKEADADLYDIVLAICASQK+T+AM RLLTRIEITSP+ KKK
Sbjct: 361 CAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMRKKK 420

Query: 421 SMTWLLRGYIKGSHFHDAAETLVKMVSLGFLPEYLDRVAVLQGLRKQIWEPENVETYFKL 480
           S+TWLLRGYIKG HFHDAAETLVKM+ LGFLPEYLDRVAVLQGLRKQI EPENV+TY  L
Sbjct: 421 SLTWLLRGYIKGGHFHDAAETLVKMIDLGFLPEYLDRVAVLQGLRKQIREPENVDTYLDL 480

Query: 481 CKCLSDANLIGPSLVYLHIQKSKLWVIKML 511
           CKCLSDANLIGPSLVYLH+QK KLWV+KML
Sbjct: 481 CKCLSDANLIGPSLVYLHLQKHKLWVVKML 510

BLAST of Sed0019546 vs. NCBI nr
Match: KAG7010495.1 (Pentatricopeptide repeat-containing protein, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 907.1 bits (2343), Expect = 6.7e-260
Identity = 452/510 (88.63%), Postives = 481/510 (94.31%), Query Frame = 0

Query: 1   MVCAQGSTTLTQFGFSFSLSSGLKTERHGFFTPRLYRRSPVKFSFMVPLITCNHQNSTFS 60
           M+CAQG + LTQFGFSFSLSSGLK+ER GF  P+L  RSPV F FMV  ITCNHQNSTFS
Sbjct: 1   MICAQGFSPLTQFGFSFSLSSGLKSERLGFSAPQLCSRSPVNFCFMVSRITCNHQNSTFS 60

Query: 61  GSKAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLGEMNDRLS 120
            S+AGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTR+PSDVL EMNDRLS
Sbjct: 61  VSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDVLEEMNDRLS 120

Query: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGDHNV 180
           AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEG HNV
Sbjct: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNV 180

Query: 181 GDVVDLLVDMDCVGLKPHFSMIEKIISLYWEMDEKEKAISFVKEVLGRKLAFMKDDWEGH 240
           GDVVDLLVDMDCVGLKPHFSMIEK+ISLYW+M EKEKAISFVKEVLGRKL FMKD+WEGH
Sbjct: 181 GDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEGH 240

Query: 241 KGGPSGYLAWKMMVGGDYKGAVKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRK 300
           KGGPSGYLAWKMMV GDY+GAVKMVL+LRESGLKPEVY YL+AMTAVVKELNE AKALRK
Sbjct: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCYLIAMTAVVKELNEFAKALRK 300

Query: 301 LKSYAKNGVVAELDKDSVKLVERYQTELVADGVQLSRWVLEEGNSSIHGVVHERLLAMYI 360
           LKSYA++G+VAELDKD+V+LV+RYQ+EL+ADGV+LS WVL+EG SS HGVVHERLLAMYI
Sbjct: 301 LKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNWVLDEGGSSSHGVVHERLLAMYI 360

Query: 361 CAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKK 420
           CAGQG+EAERQLWEMKLVGKEADADLYDIVLAICASQK+TRAM+RLLTRIEITSP LKKK
Sbjct: 361 CAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLTRIEITSPRLKKK 420

Query: 421 SMTWLLRGYIKGSHFHDAAETLVKMVSLGFLPEYLDRVAVLQGLRKQIWEPENVETYFKL 480
           S+TWLLRGYIKG HF DAAETLVKMV+LGFLPEYLDRVAVLQGLRK+I EPENVETY  L
Sbjct: 421 SLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLDL 480

Query: 481 CKCLSDANLIGPSLVYLHIQKSKLWVIKML 511
           CKCLSDANLIGPSLVYLH+QK KLWVIKML
Sbjct: 481 CKCLSDANLIGPSLVYLHLQKYKLWVIKML 510

BLAST of Sed0019546 vs. NCBI nr
Match: XP_023512972.1 (pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 905.6 bits (2339), Expect = 1.9e-259
Identity = 452/510 (88.63%), Postives = 480/510 (94.12%), Query Frame = 0

Query: 1   MVCAQGSTTLTQFGFSFSLSSGLKTERHGFFTPRLYRRSPVKFSFMVPLITCNHQNSTFS 60
           M+CAQG T LTQFGFSFSLSSGLK+ER GF  P+L  RSPV F FMV  ITCNHQNSTFS
Sbjct: 1   MICAQGFTPLTQFGFSFSLSSGLKSERLGFSAPQLCSRSPVNFCFMVSRITCNHQNSTFS 60

Query: 61  GSKAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLGEMNDRLS 120
            S+AGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTR+PSDVL EMNDRLS
Sbjct: 61  VSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDVLEEMNDRLS 120

Query: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGDHNV 180
           AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEG HNV
Sbjct: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNV 180

Query: 181 GDVVDLLVDMDCVGLKPHFSMIEKIISLYWEMDEKEKAISFVKEVLGRKLAFMKDDWEGH 240
           GDVVDLLVDMDCVGLKPHFSMIEK+ISLYW+M EKEKAISFVKEVLGRKL FMKD+WEGH
Sbjct: 181 GDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEGH 240

Query: 241 KGGPSGYLAWKMMVGGDYKGAVKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRK 300
           KGGPSGYLAWKMMV GDY+GAVKMVL+LRESGLKPEVY YL+AMTAVVKELNE AKALRK
Sbjct: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCYLIAMTAVVKELNEFAKALRK 300

Query: 301 LKSYAKNGVVAELDKDSVKLVERYQTELVADGVQLSRWVLEEGNSSIHGVVHERLLAMYI 360
           LKSYA++G+VAELDKD+V+LV+RYQ+EL+ADGV+LS WVL+EG SS H VVHERLLAMYI
Sbjct: 301 LKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNWVLDEGGSSSHRVVHERLLAMYI 360

Query: 361 CAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKK 420
           CAGQG+EAERQLWEMKLVGKEADADLYDIVLAICASQK+TRAM+RLLTRIEITSP LKKK
Sbjct: 361 CAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLTRIEITSPRLKKK 420

Query: 421 SMTWLLRGYIKGSHFHDAAETLVKMVSLGFLPEYLDRVAVLQGLRKQIWEPENVETYFKL 480
           S+TWLLRGYIKG HF DAAETLVKMV+LGFLPEYLDRVAVLQGLRK+I EPENVETY  L
Sbjct: 421 SLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLDL 480

Query: 481 CKCLSDANLIGPSLVYLHIQKSKLWVIKML 511
           CKCLSDANLIGPSLVYLH+QK KLWVIKML
Sbjct: 481 CKCLSDANLIGPSLVYLHLQKYKLWVIKML 510

BLAST of Sed0019546 vs. NCBI nr
Match: XP_022944005.1 (pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Cucurbita moschata])

HSP 1 Score: 905.6 bits (2339), Expect = 1.9e-259
Identity = 452/510 (88.63%), Postives = 480/510 (94.12%), Query Frame = 0

Query: 1   MVCAQGSTTLTQFGFSFSLSSGLKTERHGFFTPRLYRRSPVKFSFMVPLITCNHQNSTFS 60
           M+CAQG T LTQFGFSFSLSSGLK+ER GF  P+L  RSPV F FMV  ITCNHQNSTFS
Sbjct: 1   MICAQGFTPLTQFGFSFSLSSGLKSERLGFSAPQLCSRSPVNFCFMVSRITCNHQNSTFS 60

Query: 61  GSKAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLGEMNDRLS 120
            S+AGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTR+PSDVL EMNDRLS
Sbjct: 61  VSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDVLEEMNDRLS 120

Query: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGDHNV 180
           AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEG HNV
Sbjct: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNV 180

Query: 181 GDVVDLLVDMDCVGLKPHFSMIEKIISLYWEMDEKEKAISFVKEVLGRKLAFMKDDWEGH 240
            DVVDLLVDMDCVGLKPHFSMIEK+ISLYW+M EKEKAISFVKEVLGRKL FMKD+WEGH
Sbjct: 181 RDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEGH 240

Query: 241 KGGPSGYLAWKMMVGGDYKGAVKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRK 300
           KGGPSGYLAWKMMV GDY+GAVKMVL+LRESGLKPEVY YL+AMTAVVKELNE AKALRK
Sbjct: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCYLIAMTAVVKELNEFAKALRK 300

Query: 301 LKSYAKNGVVAELDKDSVKLVERYQTELVADGVQLSRWVLEEGNSSIHGVVHERLLAMYI 360
           LKSYA++G+VAELDKD+V+LV+RYQ+EL+ADGV+LS WVL+EG SS HGVVHERLLAMYI
Sbjct: 301 LKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNWVLDEGGSSSHGVVHERLLAMYI 360

Query: 361 CAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKK 420
           CAGQG+EAERQLWEMKLVGKEADADLYDIVLAICASQK+TRAM+RLLTRIEITSP LKKK
Sbjct: 361 CAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLTRIEITSPRLKKK 420

Query: 421 SMTWLLRGYIKGSHFHDAAETLVKMVSLGFLPEYLDRVAVLQGLRKQIWEPENVETYFKL 480
           S+TWLLRGYIKG HF DAAETLVKMV+LGFLPEYLDRVAVLQGLRK+I EPENVETY  L
Sbjct: 421 SLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLDL 480

Query: 481 CKCLSDANLIGPSLVYLHIQKSKLWVIKML 511
           CKCLSDANLIGPSLVYLH+QK KLWVIKML
Sbjct: 481 CKCLSDANLIGPSLVYLHLQKYKLWVIKML 510

BLAST of Sed0019546 vs. NCBI nr
Match: KAG6570645.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 905.2 bits (2338), Expect = 2.5e-259
Identity = 451/510 (88.43%), Postives = 480/510 (94.12%), Query Frame = 0

Query: 1   MVCAQGSTTLTQFGFSFSLSSGLKTERHGFFTPRLYRRSPVKFSFMVPLITCNHQNSTFS 60
           M+CAQG + LTQFGFSFSLSSGLK+ER GF  P+L  RSPV F FMV  ITCNHQNSTFS
Sbjct: 1   MICAQGFSPLTQFGFSFSLSSGLKSERLGFSAPQLCSRSPVNFCFMVSRITCNHQNSTFS 60

Query: 61  GSKAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLGEMNDRLS 120
            S+AGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERM R+PSDVL EMNDRLS
Sbjct: 61  VSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMARDPSDVLEEMNDRLS 120

Query: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGDHNV 180
           AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEG HNV
Sbjct: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNV 180

Query: 181 GDVVDLLVDMDCVGLKPHFSMIEKIISLYWEMDEKEKAISFVKEVLGRKLAFMKDDWEGH 240
           GDVVDLLVDMDCVGLKPHFSMIEK+ISLYW+M EKEKAISFVKEVLGRKL FMKD+WEGH
Sbjct: 181 GDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEGH 240

Query: 241 KGGPSGYLAWKMMVGGDYKGAVKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRK 300
           KGGPSGYLAWKMMV GDY+GAVKMVL+LRESGLKPEVY YL+AMTAVVKELNE AKALRK
Sbjct: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCYLIAMTAVVKELNEFAKALRK 300

Query: 301 LKSYAKNGVVAELDKDSVKLVERYQTELVADGVQLSRWVLEEGNSSIHGVVHERLLAMYI 360
           LKSYA++G+VAELDKD+V+LV+RYQ+EL+ADGV+LS WVL+EG SS HGVVHERLLAMYI
Sbjct: 301 LKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNWVLDEGGSSSHGVVHERLLAMYI 360

Query: 361 CAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKK 420
           CAGQG+EAERQLWEMKLVGKEADADLYDIVLAICASQK+TRAM+RLLTRIEITSP LKKK
Sbjct: 361 CAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLTRIEITSPRLKKK 420

Query: 421 SMTWLLRGYIKGSHFHDAAETLVKMVSLGFLPEYLDRVAVLQGLRKQIWEPENVETYFKL 480
           S+TWLLRGYIKG HF DAAETLVKMV+LGFLPEYLDRVAVLQGLRK+I EPENVETY  L
Sbjct: 421 SLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLDL 480

Query: 481 CKCLSDANLIGPSLVYLHIQKSKLWVIKML 511
           CKCLSDANLIGPSLVYLH+QK KLWVIKML
Sbjct: 481 CKCLSDANLIGPSLVYLHLQKYKLWVIKML 510

BLAST of Sed0019546 vs. ExPASy Swiss-Prot
Match: Q0WNN7 (Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g30100 PE=2 SV=2)

HSP 1 Score: 595.5 bits (1534), Expect = 5.7e-169
Identity = 303/491 (61.71%), Postives = 376/491 (76.58%), Query Frame = 0

Query: 31  FTPRLYRRSPVKFSFMVPLITCNHQNSTFSGSKAGKFRDLRLFKSVELDQFITSDDE--- 90
           F PRL+R   VK +     I CN +        AGKFR++ L +SVELDQFITS++E   
Sbjct: 20  FLPRLHRNHSVKPN---SRIICNLK----LNYSAGKFREMGLSRSVELDQFITSEEEEGE 79

Query: 91  -DEMGDGFFEAIEELERMTREPSDVLGEMNDRLSAREFQLVLVYFSQEGRDSWCALEVFE 150
            +E+G+GFFEAIEELERMTREPSD+L EMN RLS+RE QL+LVYF+QEGRDSWC LEVFE
Sbjct: 80  AEEIGEGFFEAIEELERMTREPSDILEEMNHRLSSRELQLMLVYFAQEGRDSWCTLEVFE 139

Query: 151 WLQKENRVDKETMELMVSIMCSWIKKLVEGDHNVGDVVDLLVDMDCVGLKPHFSMIEKII 210
           WL+KENRVD+E MELMVSIMC W+KKL+E + N   V DLL++MDCVGLKP FSM++K+I
Sbjct: 140 WLKKENRVDEEIMELMVSIMCGWVKKLIEDECNAHQVFDLLIEMDCVGLKPGFSMMDKVI 199

Query: 211 SLYWEMDEKEKAISFVKEVLGRKLAFMKD-----DWEGHKGGPSGYLAWKMMVGGDYKGA 270
           +LY EM +KE A+ FVKEVL R+  F          EG KGGP GYLAWK MV GDY+ A
Sbjct: 200 ALYCEMGKKESAVLFVKEVLRRRDGFGYSVVGGGGSEGRKGGPVGYLAWKFMVDGDYRKA 259

Query: 271 VKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRKLKSYAKNGVVAELDKDSVKLV 330
           V MV+ LR SGLKPE YSYL+AMTA+VKELN L K LR+LK +A+ G VAE+D     L+
Sbjct: 260 VDMVMELRLSGLKPEAYSYLIAMTAIVKELNSLGKTLRELKRFARAGFVAEIDDHDRVLI 319

Query: 331 ERYQTELVADGVQLSRWVLEEG--NSSIHGVVHERLLAMYICAGQGVEAERQLWEMKLVG 390
           E+YQ+E ++ G+QL+ W +EEG  N SI GVVHERLLAMYICAG+G EAE+QLW+MKL G
Sbjct: 320 EKYQSETLSRGLQLATWAVEEGQENDSIIGVVHERLLAMYICAGRGPEAEKQLWKMKLAG 379

Query: 391 KEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKKSMTWLLRGYIKGSHFHDAA 450
           +E +ADL+DIV+AICASQK+  A+SRLLTR+E      KKK+++WLLRGY+KG HF +AA
Sbjct: 380 REPEADLHDIVMAICASQKEVNAVSRLLTRVEFMGSQRKKKTLSWLLRGYVKGGHFEEAA 439

Query: 451 ETLVKMVSLGFLPEYLDRVAVLQGLRKQIWEPENVETYFKLCKCLSDANLIGPSLVYLHI 510
           ETLV M+  G  PEY+DRVAV+QG+ ++I  P +VE Y  LCK L DA L+GP LVY++I
Sbjct: 440 ETLVSMIDSGLHPEYIDRVAVMQGMTRKIQRPRDVEAYMSLCKRLFDAGLVGPCLVYMYI 499

BLAST of Sed0019546 vs. ExPASy Swiss-Prot
Match: Q0WVV0 (Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g10910 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.8e-05
Identity = 45/215 (20.93%), Postives = 84/215 (39.07%), Query Frame = 0

Query: 252 MMVGGDYKGAVKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRKLKSYAKNGVVA 311
           ++  G     +K+   ++  GLKP+V +Y   +   +K  N   KA+  +     NG+  
Sbjct: 176 LVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKNGYPKAIELIGELPHNGI-- 235

Query: 312 ELDKDSVKLVERYQTELVADGVQLSRWVLEEGNSSIHGVVHERLLAMYICAGQGVEAERQ 371
                                              +  V++  +LA+    G+  EAE  
Sbjct: 236 ----------------------------------QMDSVMYGTVLAICASNGRSEEAENF 295

Query: 372 LWEMKLVGKEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKKSMTWLLRGYIK 431
           + +MK+ G   +   Y  +L   + +   +    L+T ++    +  K  MT LL+ YIK
Sbjct: 296 IQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIK 354

Query: 432 GSHFHDAAETLVKMVSLGFLPEYLDRVAVLQGLRK 467
           G  F  + E L ++ S G+    +    ++ GL K
Sbjct: 356 GGLFDRSRELLSELESAGYAENEMPYCMLMDGLSK 354

BLAST of Sed0019546 vs. ExPASy TrEMBL
Match: A0A6J1FYE9 (pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111448564 PE=4 SV=1)

HSP 1 Score: 905.6 bits (2339), Expect = 9.4e-260
Identity = 452/510 (88.63%), Postives = 480/510 (94.12%), Query Frame = 0

Query: 1   MVCAQGSTTLTQFGFSFSLSSGLKTERHGFFTPRLYRRSPVKFSFMVPLITCNHQNSTFS 60
           M+CAQG T LTQFGFSFSLSSGLK+ER GF  P+L  RSPV F FMV  ITCNHQNSTFS
Sbjct: 1   MICAQGFTPLTQFGFSFSLSSGLKSERLGFSAPQLCSRSPVNFCFMVSRITCNHQNSTFS 60

Query: 61  GSKAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLGEMNDRLS 120
            S+AGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTR+PSDVL EMNDRLS
Sbjct: 61  VSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDVLEEMNDRLS 120

Query: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGDHNV 180
           AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEG HNV
Sbjct: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNV 180

Query: 181 GDVVDLLVDMDCVGLKPHFSMIEKIISLYWEMDEKEKAISFVKEVLGRKLAFMKDDWEGH 240
            DVVDLLVDMDCVGLKPHFSMIEK+ISLYW+M EKEKAISFVKEVLGRKL FMKD+WEGH
Sbjct: 181 RDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEGH 240

Query: 241 KGGPSGYLAWKMMVGGDYKGAVKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRK 300
           KGGPSGYLAWKMMV GDY+GAVKMVL+LRESGLKPEVY YL+AMTAVVKELNE AKALRK
Sbjct: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCYLIAMTAVVKELNEFAKALRK 300

Query: 301 LKSYAKNGVVAELDKDSVKLVERYQTELVADGVQLSRWVLEEGNSSIHGVVHERLLAMYI 360
           LKSYA++G+VAELDKD+V+LV+RYQ+EL+ADGV+LS WVL+EG SS HGVVHERLLAMYI
Sbjct: 301 LKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNWVLDEGGSSSHGVVHERLLAMYI 360

Query: 361 CAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKK 420
           CAGQG+EAERQLWEMKLVGKEADADLYDIVLAICASQK+TRAM+RLLTRIEITSP LKKK
Sbjct: 361 CAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLTRIEITSPRLKKK 420

Query: 421 SMTWLLRGYIKGSHFHDAAETLVKMVSLGFLPEYLDRVAVLQGLRKQIWEPENVETYFKL 480
           S+TWLLRGYIKG HF DAAETLVKMV+LGFLPEYLDRVAVLQGLRK+I EPENVETY  L
Sbjct: 421 SLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLDL 480

Query: 481 CKCLSDANLIGPSLVYLHIQKSKLWVIKML 511
           CKCLSDANLIGPSLVYLH+QK KLWVIKML
Sbjct: 481 CKCLSDANLIGPSLVYLHLQKYKLWVIKML 510

BLAST of Sed0019546 vs. ExPASy TrEMBL
Match: A0A6J1JH85 (pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111484464 PE=4 SV=1)

HSP 1 Score: 899.0 bits (2322), Expect = 8.8e-258
Identity = 447/510 (87.65%), Postives = 481/510 (94.31%), Query Frame = 0

Query: 1   MVCAQGSTTLTQFGFSFSLSSGLKTERHGFFTPRLYRRSPVKFSFMVPLITCNHQNSTFS 60
           M+CA G T LT+FGFSFSLSSGLK++R GF  P+L  RSPV F F+V  ITCNHQNSTFS
Sbjct: 1   MICAPGFTPLTKFGFSFSLSSGLKSKRLGFSAPQLCSRSPVNFCFIVSRITCNHQNSTFS 60

Query: 61  GSKAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLGEMNDRLS 120
            S+AGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTR+PSDVL EMNDRLS
Sbjct: 61  VSRAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTRDPSDVLEEMNDRLS 120

Query: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGDHNV 180
           AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEG HNV
Sbjct: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGQHNV 180

Query: 181 GDVVDLLVDMDCVGLKPHFSMIEKIISLYWEMDEKEKAISFVKEVLGRKLAFMKDDWEGH 240
           GDVVDLLVDMDCVGLKPHFSMIEK+ISLYW+M EKEKAISFVKEVLGRKL FMKD+WEGH
Sbjct: 181 GDVVDLLVDMDCVGLKPHFSMIEKVISLYWDMGEKEKAISFVKEVLGRKLDFMKDNWEGH 240

Query: 241 KGGPSGYLAWKMMVGGDYKGAVKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRK 300
           KGGPSGYLAWKMMV GDY+GAVKMVL+LRESGLKPEVY +L+AMTAVVKELNE AKALRK
Sbjct: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLNLRESGLKPEVYCFLIAMTAVVKELNEFAKALRK 300

Query: 301 LKSYAKNGVVAELDKDSVKLVERYQTELVADGVQLSRWVLEEGNSSIHGVVHERLLAMYI 360
           LKSYA++G+VAELDKD+V+LV+RYQ+EL+ADGV+LS WVL+EG+SS HGVVHERLLAMYI
Sbjct: 301 LKSYARDGMVAELDKDNVELVKRYQSELLADGVRLSNWVLDEGSSSSHGVVHERLLAMYI 360

Query: 361 CAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKK 420
           CAGQG+EAERQLWEMKLVGKEADADLYDIVLAICASQK+TRAM+RLL+RIEITSP LKKK
Sbjct: 361 CAGQGLEAERQLWEMKLVGKEADADLYDIVLAICASQKETRAMNRLLSRIEITSPRLKKK 420

Query: 421 SMTWLLRGYIKGSHFHDAAETLVKMVSLGFLPEYLDRVAVLQGLRKQIWEPENVETYFKL 480
           S+TWLLRGYIKG HF DAAETLVKMV+LGFLPEYLDRVAVLQGLRK+I EPENVETY  L
Sbjct: 421 SLTWLLRGYIKGGHFRDAAETLVKMVNLGFLPEYLDRVAVLQGLRKRIREPENVETYLDL 480

Query: 481 CKCLSDANLIGPSLVYLHIQKSKLWVIKML 511
           CKCLSDANLIGPSLVYLH+QK KLWVIKML
Sbjct: 481 CKCLSDANLIGPSLVYLHLQKYKLWVIKML 510

BLAST of Sed0019546 vs. ExPASy TrEMBL
Match: A0A6J1D3T2 (pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017036 PE=4 SV=1)

HSP 1 Score: 899.0 bits (2322), Expect = 8.8e-258
Identity = 449/511 (87.87%), Postives = 478/511 (93.54%), Query Frame = 0

Query: 1   MVCAQGSTTLTQFGFSFSLSSGLKTERHGFF-TPRLYRRSPVKFSFMVPLITCNHQNSTF 60
           M+CAQG T +TQFGFSFSLSS LKT+R  FF TP+LY  SPV F FM+  ITCNH+NSTF
Sbjct: 1   MICAQGFTPVTQFGFSFSLSSALKTQRQRFFSTPQLYCHSPVNFCFMISCITCNHRNSTF 60

Query: 61  SGSKAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLGEMNDRL 120
           S  KAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVL EMNDRL
Sbjct: 61  SVLKAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRL 120

Query: 121 SAREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGDHN 180
           SAREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGDHN
Sbjct: 121 SAREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGDHN 180

Query: 181 VGDVVDLLVDMDCVGLKPHFSMIEKIISLYWEMDEKEKAISFVKEVLGRKLAFMKDDWEG 240
           VGDVVDLLVDMDCVGLKPHFSMIEK+ISLYWEM EKE+AISFVKEVLGRK+AFMKDD EG
Sbjct: 181 VGDVVDLLVDMDCVGLKPHFSMIEKVISLYWEMGEKEQAISFVKEVLGRKIAFMKDDREG 240

Query: 241 HKGGPSGYLAWKMMVGGDYKGAVKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALR 300
           HKGGPSGYLAWKMMV GDY+GAVK+VLHLRESGL PEVYSYL+AMTAVVKELNE AKALR
Sbjct: 241 HKGGPSGYLAWKMMVDGDYRGAVKLVLHLRESGLNPEVYSYLIAMTAVVKELNEFAKALR 300

Query: 301 KLKSYAKNGVVAELDKDSVKLVERYQTELVADGVQLSRWVLEEGNSSIHGVVHERLLAMY 360
           KLKSY ++G+VAELDKD+V LVE YQTEL+ADGV+LS WVLEEG+SSIHGV HERLLAMY
Sbjct: 301 KLKSYTRDGIVAELDKDNVGLVEIYQTELLADGVRLSNWVLEEGSSSIHGVAHERLLAMY 360

Query: 361 ICAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKK 420
           ICAG+G+EAERQLWEMKLVGKEAD+DLYDIVLAICASQK+TRAM+RLLTRIEI SPLLKK
Sbjct: 361 ICAGRGLEAERQLWEMKLVGKEADSDLYDIVLAICASQKETRAMNRLLTRIEIISPLLKK 420

Query: 421 KSMTWLLRGYIKGSHFHDAAETLVKMVSLGFLPEYLDRVAVLQGLRKQIWEPENVETYFK 480
           KS++WLLRGYIKG HF DAAETLVKMV LGFLPEYLDRVAVLQGLRK+I EP +VETYFK
Sbjct: 421 KSLSWLLRGYIKGGHFSDAAETLVKMVDLGFLPEYLDRVAVLQGLRKRIREPGSVETYFK 480

Query: 481 LCKCLSDANLIGPSLVYLHIQKSKLWVIKML 511
           LCKCLSDANLIGP LVYLH+QK KLWVIKML
Sbjct: 481 LCKCLSDANLIGPGLVYLHLQKHKLWVIKML 511

BLAST of Sed0019546 vs. ExPASy TrEMBL
Match: A0A0A0KC35 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G182120 PE=4 SV=1)

HSP 1 Score: 876.3 bits (2263), Expect = 6.1e-251
Identity = 438/510 (85.88%), Postives = 470/510 (92.16%), Query Frame = 0

Query: 1   MVCAQGSTTLTQFGFSFSLSSGLKTERHGFFTPRLYRRSPVKFSFMVPLITCNHQNSTFS 60
           M+CAQG T LTQFGFSFSLSS L+++R GF TPRLY  SP         I+CN+Q+STFS
Sbjct: 1   MICAQGFTPLTQFGFSFSLSSPLESQRCGFSTPRLYMVSP---------ISCNYQDSTFS 60

Query: 61  GSKAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLGEMNDRLS 120
            S+A KFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVL EMNDRLS
Sbjct: 61  VSRAAKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLS 120

Query: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGDHNV 180
           ARE QLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEG HNV
Sbjct: 121 AREIQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGRHNV 180

Query: 181 GDVVDLLVDMDCVGLKPHFSMIEKIISLYWEMDEKEKAISFVKEVLGRKLAFMKDDWEGH 240
           GDVVDLLVDMDCVGLKPHFSMIEK+ISLYWEM EKEKA+ FVKEVLGR LAFMKDDWEGH
Sbjct: 181 GDVVDLLVDMDCVGLKPHFSMIEKVISLYWEMGEKEKAVFFVKEVLGRNLAFMKDDWEGH 240

Query: 241 KGGPSGYLAWKMMVGGDYKGAVKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRK 300
           KGGPSGYLAWKMMV GDY+GAVKMVLHLRESGL+PEVYSYL+AMTAVVKELNE AKALRK
Sbjct: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRK 300

Query: 301 LKSYAKNGVVAELDKDSVKLVERYQTELVADGVQLSRWVLEEGNSSIHGVVHERLLAMYI 360
           LK YA++G VAELDK++V+LV +YQTEL+ADGVQLS WVLEEG+SSI GVVHERLLAMYI
Sbjct: 301 LKGYARDGFVAELDKNNVELVAKYQTELLADGVQLSNWVLEEGSSSIRGVVHERLLAMYI 360

Query: 361 CAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKK 420
           CAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQK+T+AM RLLTRIEITSP++KKK
Sbjct: 361 CAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKETKAMKRLLTRIEITSPMIKKK 420

Query: 421 SMTWLLRGYIKGSHFHDAAETLVKMVSLGFLPEYLDRVAVLQGLRKQIWEPENVETYFKL 480
           S+TWLLRGYIKG HF DAA TLVKM++LGFLPEYLDRVAVLQGLRK+I EPE+V TY  L
Sbjct: 421 SLTWLLRGYIKGGHFRDAAGTLVKMINLGFLPEYLDRVAVLQGLRKEIREPESVHTYLDL 480

Query: 481 CKCLSDANLIGPSLVYLHIQKSKLWVIKML 511
           CKCLSDANLIGPSLVYLH+QK KLW+IKML
Sbjct: 481 CKCLSDANLIGPSLVYLHLQKHKLWIIKML 501

BLAST of Sed0019546 vs. ExPASy TrEMBL
Match: A0A1S3CNE0 (pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103502924 PE=4 SV=1)

HSP 1 Score: 873.6 bits (2256), Expect = 4.0e-250
Identity = 437/510 (85.69%), Postives = 469/510 (91.96%), Query Frame = 0

Query: 1   MVCAQGSTTLTQFGFSFSLSSGLKTERHGFFTPRLYRRSPVKFSFMVPLITCNHQNSTFS 60
           M+CAQG T LTQFGFSFSLSS L+T+R+GF TPRLY  SP         I+CN+Q+STFS
Sbjct: 1   MICAQGFTPLTQFGFSFSLSSPLETQRYGFSTPRLYMVSP---------ISCNYQDSTFS 60

Query: 61  GSKAGKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLGEMNDRLS 120
            S+A KFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVL EMNDRLS
Sbjct: 61  VSRAAKFRDLRLFKSVELDQFITSDDEDEMGDGFFEAIEELERMTREPSDVLEEMNDRLS 120

Query: 121 AREFQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWIKKLVEGDHNV 180
           ARE QLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWI KLVEG HNV
Sbjct: 121 AREIQLVLVYFSQEGRDSWCALEVFEWLQKENRVDKETMELMVSIMCSWINKLVEGRHNV 180

Query: 181 GDVVDLLVDMDCVGLKPHFSMIEKIISLYWEMDEKEKAISFVKEVLGRKLAFMKDDWEGH 240
           GDVVDLLVDMDCVGLKPHFSMIEK+ISLYWEM EKEKAI FVKEVLGR LAFMKDDWEGH
Sbjct: 181 GDVVDLLVDMDCVGLKPHFSMIEKVISLYWEMGEKEKAIFFVKEVLGRNLAFMKDDWEGH 240

Query: 241 KGGPSGYLAWKMMVGGDYKGAVKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRK 300
           KGGPSGYLAWKMMV GDY+GAVKMVLHLRESGL+PEVYSYL+AMTAVVKELNE AKALRK
Sbjct: 241 KGGPSGYLAWKMMVDGDYRGAVKMVLHLRESGLRPEVYSYLIAMTAVVKELNEFAKALRK 300

Query: 301 LKSYAKNGVVAELDKDSVKLVERYQTELVADGVQLSRWVLEEGNSSIHGVVHERLLAMYI 360
           LKSYA++G VAELDK++V+LV +YQTEL+ADGV+LS WVLEEG+SSIHGVVHERLLAMYI
Sbjct: 301 LKSYARDGYVAELDKNNVELVAKYQTELLADGVRLSNWVLEEGSSSIHGVVHERLLAMYI 360

Query: 361 CAGQGVEAERQLWEMKLVGKEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKK 420
           CAGQGVEAERQLWEMKL+GKEADADLYDIVLAICASQK+ +AM RLLTRIEITSP++KKK
Sbjct: 361 CAGQGVEAERQLWEMKLLGKEADADLYDIVLAICASQKEIKAMKRLLTRIEITSPMIKKK 420

Query: 421 SMTWLLRGYIKGSHFHDAAETLVKMVSLGFLPEYLDRVAVLQGLRKQIWEPENVETYFKL 480
           S+TWLLRGYIKG HF DAA T+VKM++LGFLPEYLDRVAVLQGLRK I EPE V TY  L
Sbjct: 421 SLTWLLRGYIKGGHFRDAAGTVVKMINLGFLPEYLDRVAVLQGLRKGIREPEIVHTYLDL 480

Query: 481 CKCLSDANLIGPSLVYLHIQKSKLWVIKML 511
           CKCLSDANLIGPSLVYLH+QK KLW+IKML
Sbjct: 481 CKCLSDANLIGPSLVYLHLQKHKLWIIKML 501

BLAST of Sed0019546 vs. TAIR 10
Match: AT2G30100.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 595.5 bits (1534), Expect = 4.0e-170
Identity = 303/491 (61.71%), Postives = 376/491 (76.58%), Query Frame = 0

Query: 31  FTPRLYRRSPVKFSFMVPLITCNHQNSTFSGSKAGKFRDLRLFKSVELDQFITSDDE--- 90
           F PRL+R   VK +     I CN +        AGKFR++ L +SVELDQFITS++E   
Sbjct: 20  FLPRLHRNHSVKPN---SRIICNLK----LNYSAGKFREMGLSRSVELDQFITSEEEEGE 79

Query: 91  -DEMGDGFFEAIEELERMTREPSDVLGEMNDRLSAREFQLVLVYFSQEGRDSWCALEVFE 150
            +E+G+GFFEAIEELERMTREPSD+L EMN RLS+RE QL+LVYF+QEGRDSWC LEVFE
Sbjct: 80  AEEIGEGFFEAIEELERMTREPSDILEEMNHRLSSRELQLMLVYFAQEGRDSWCTLEVFE 139

Query: 151 WLQKENRVDKETMELMVSIMCSWIKKLVEGDHNVGDVVDLLVDMDCVGLKPHFSMIEKII 210
           WL+KENRVD+E MELMVSIMC W+KKL+E + N   V DLL++MDCVGLKP FSM++K+I
Sbjct: 140 WLKKENRVDEEIMELMVSIMCGWVKKLIEDECNAHQVFDLLIEMDCVGLKPGFSMMDKVI 199

Query: 211 SLYWEMDEKEKAISFVKEVLGRKLAFMKD-----DWEGHKGGPSGYLAWKMMVGGDYKGA 270
           +LY EM +KE A+ FVKEVL R+  F          EG KGGP GYLAWK MV GDY+ A
Sbjct: 200 ALYCEMGKKESAVLFVKEVLRRRDGFGYSVVGGGGSEGRKGGPVGYLAWKFMVDGDYRKA 259

Query: 271 VKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRKLKSYAKNGVVAELDKDSVKLV 330
           V MV+ LR SGLKPE YSYL+AMTA+VKELN L K LR+LK +A+ G VAE+D     L+
Sbjct: 260 VDMVMELRLSGLKPEAYSYLIAMTAIVKELNSLGKTLRELKRFARAGFVAEIDDHDRVLI 319

Query: 331 ERYQTELVADGVQLSRWVLEEG--NSSIHGVVHERLLAMYICAGQGVEAERQLWEMKLVG 390
           E+YQ+E ++ G+QL+ W +EEG  N SI GVVHERLLAMYICAG+G EAE+QLW+MKL G
Sbjct: 320 EKYQSETLSRGLQLATWAVEEGQENDSIIGVVHERLLAMYICAGRGPEAEKQLWKMKLAG 379

Query: 391 KEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKKSMTWLLRGYIKGSHFHDAA 450
           +E +ADL+DIV+AICASQK+  A+SRLLTR+E      KKK+++WLLRGY+KG HF +AA
Sbjct: 380 REPEADLHDIVMAICASQKEVNAVSRLLTRVEFMGSQRKKKTLSWLLRGYVKGGHFEEAA 439

Query: 451 ETLVKMVSLGFLPEYLDRVAVLQGLRKQIWEPENVETYFKLCKCLSDANLIGPSLVYLHI 510
           ETLV M+  G  PEY+DRVAV+QG+ ++I  P +VE Y  LCK L DA L+GP LVY++I
Sbjct: 440 ETLVSMIDSGLHPEYIDRVAVMQGMTRKIQRPRDVEAYMSLCKRLFDAGLVGPCLVYMYI 499

BLAST of Sed0019546 vs. TAIR 10
Match: AT1G10910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 52.4 bits (124), Expect = 1.3e-06
Identity = 45/215 (20.93%), Postives = 84/215 (39.07%), Query Frame = 0

Query: 252 MMVGGDYKGAVKMVLHLRESGLKPEVYSYLVAMTAVVKELNELAKALRKLKSYAKNGVVA 311
           ++  G     +K+   ++  GLKP+V +Y   +   +K  N   KA+  +     NG+  
Sbjct: 176 LVKNGKLDSCIKLFDQMKRDGLKPDVVTYNTLLAGCIKVKNGYPKAIELIGELPHNGI-- 235

Query: 312 ELDKDSVKLVERYQTELVADGVQLSRWVLEEGNSSIHGVVHERLLAMYICAGQGVEAERQ 371
                                              +  V++  +LA+    G+  EAE  
Sbjct: 236 ----------------------------------QMDSVMYGTVLAICASNGRSEEAENF 295

Query: 372 LWEMKLVGKEADADLYDIVLAICASQKQTRAMSRLLTRIEITSPLLKKKSMTWLLRGYIK 431
           + +MK+ G   +   Y  +L   + +   +    L+T ++    +  K  MT LL+ YIK
Sbjct: 296 IQQMKVEGHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIK 354

Query: 432 GSHFHDAAETLVKMVSLGFLPEYLDRVAVLQGLRK 467
           G  F  + E L ++ S G+    +    ++ GL K
Sbjct: 356 GGLFDRSRELLSELESAGYAENEMPYCMLMDGLSK 354

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038901728.12.9e-26389.02pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Benincasa ... [more]
KAG7010495.16.7e-26088.63Pentatricopeptide repeat-containing protein, chloroplastic [Cucurbita argyrosper... [more]
XP_023512972.11.9e-25988.63pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Cucurbita ... [more]
XP_022944005.11.9e-25988.63pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Cucurbita ... [more]
KAG6570645.12.5e-25988.43Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
Match NameE-valueIdentityDescription
Q0WNN75.7e-16961.71Pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Arabidop... [more]
Q0WVV01.8e-0520.93Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A6J1FYE99.4e-26088.63pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Cucurbit... [more]
A0A6J1JH858.8e-25887.65pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Cucurbit... [more]
A0A6J1D3T28.8e-25887.87pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Momordic... [more]
A0A0A0KC356.1e-25185.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G182120 PE=4 SV=1[more]
A0A1S3CNE04.0e-25085.69pentatricopeptide repeat-containing protein At2g30100, chloroplastic OS=Cucumis ... [more]
Match NameE-valueIdentityDescription
AT2G30100.14.0e-17061.71pentatricopeptide (PPR) repeat-containing protein [more]
AT1G10910.11.3e-0620.93Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 256..503
e-value: 5.3E-10
score: 41.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 94..232
e-value: 4.6E-5
score: 25.0
NoneNo IPR availablePANTHERPTHR47880OS05G0353300 PROTEINcoord: 19..510

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0019546.1Sed0019546.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding