Sed0019538 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGCTGCTCCTAAACTTTTATGTCTATTGATTGGCATTTCTTTCGTGGTTGCGGCGACCGCCGTCGTCTCGGACGAGCCTGACTTACCTTTCGTCGTCAATGGCTACGTCTACTGCGACACTTGCCGCTGTGGCTTCGAGACCAACGCCTCCATCCCCATCTCTGGTATGTCCATGGTTCCTTCTCCATTCCCATTTCACATACTGGTTCTTGAAATTAGAGTTATAGCTTACTTGAGTTTGAGTCATAAATTTCACCGTTTTTGAAAATTAAGCATGTTTTACACTATTATTTCTTTTTGTTATCAAACGATTTAATTATTTTTTTAAAGATGAATTTGTATCTTGCTTGATGATTATTTCGTTTCTAAAATTAAGCAGATGAATTATTGTTTAATTATTTTTTAATGTTCTTTTAACTTTGAGTTTGTTTAGTTATATACTTTTTACATAAATTTTCAAAATTTATGCTAAGTTTTGAAAACTAAACAAAAATAATAAATTTGAAACTCTTCGGAGTGAAATGGTTAGAAAATATGTACAAATTTCAATACACATTTATGCTTTAATATCTTTTTTTTTTTTTGAAGAAAACCGACAGATATTTCTTTAGCTTGCGAGATTCCTTTATCATTTTTTTTAAACCAATTTAGTGAAGTTTTGAAAACTAAAAGATTAGGTTCAAGAATAAGAAATCATGTATTATTGTAGTAGTGTAAACACTTAGAAAAGTACATTAAAAAAAAACACTTTGAAAACTATGCTTAAATTGGTTTTGCTATAACTTCTGTTTCCGACGTTGGATTGACTACCAATTTATTACATTGAGATATGTCGATACATTTTCCCATACATCAATGTTAAGATTAACTTAGTGGGTATTTAAAAGGCACCAAATTTAGGTTTGAGAAAGATTTGGATGGAGTTTAGACGGTAACCAAATCATATGTCACTCTTTTAATGATCATAAATTTCTTTTTTCTTTTTTTAATAATTATTTTTTATTTATAAGAGATTTTTTTTATGGTCTATAAAAAGGTAGCATGTGATTTCTGAACTCCACCCAAATCTTCCTCTTTAGGTTCTAGTGCAAAAGTGCACGTTCATAATCCACTTCCAACTTTATTTTATTAAGATTATTATTATTTTATCTTTTGGTACGAAATTGAATCATTTTTCCATAAAATTTATTAATCAATTACTTAATGTTTGTCGAATAGTATATGAAGCTTCGATTTTATACCATCAAATTTCGGACTACTGAGTTGGTCTAAGACGCCAAATAAAGGTTTTGGTTCGAAAGGGCATCGGCTTAGCCGAGTTGGTAGCGTCACATTAAGATTCTAGTCTGAAATAGTATGGGTTTAAATCCCACTTCACTTAGAGTTTCATAACGAGTATATACAATTTCAAATTTGTATCAATAAAGTTGAGATGGCCGAGTTGGTCTAAGGCGCCAGATTAAGGTTCTGGTCCGAAAGGGCGTGGGTTCAAATCCCACTCTCAACAATTTTCTTTTTATTTTTTTGCAAATAGTATATACAATTTCAAGTTTAAATTTTAGGCACAAAAGTGCTCAATTGAAGGTGATATTGGACTTTTCTTTCTTTCTTTTTTTTTTTTTTTTAAATATTGGATTTTTCTTTTAGTACAAGAATAAAGTTGAGAAATTCCACTAGAAGATACATGGTTAAAAGGTAAAATGAAATGAAACAGGTGCAAAAGTGAGACTAGAGTGCAGAGATAGAGCCAAATGGGTGTTGAAATTCAGAAAAGAAGCCATCACCAACTCTGAAGGAAAATACACCATTGATGTCTATGAAGACCACAAGGATGATAGCTGCAAGGTGGTTCTTGTGAGCAGCCCTCACCCTACCTGCAACCAGCCCGACCACGGCCGAAACAGCGCCACCGTCATCCTCACCAACTACAACGGTCTCACCAACAATGTTCGCTTTGCCAATGCCATGGGGTTCTTAATCGAACGCCCTCTCACTTTTTGCTCCTCACTCCTCAAACAATATCTTGACTTTGACGAGTGA ATGGCTGCTGCTCCTAAACTTTTATGTCTATTGATTGGCATTTCTTTCGTGGTTGCGGCGACCGCCGTCGTCTCGGACGAGCCTGACTTACCTTTCGTCGTCAATGGCTACGTCTACTGCGACACTTGCCGCTGTGGCTTCGAGACCAACGCCTCCATCCCCATCTCTGGTGCAAAAGTGAGACTAGAGTGCAGAGATAGAGCCAAATGGGTGTTGAAATTCAGAAAAGAAGCCATCACCAACTCTGAAGGAAAATACACCATTGATGTCTATGAAGACCACAAGGATGATAGCTGCAAGGTGGTTCTTGTGAGCAGCCCTCACCCTACCTGCAACCAGCCCGACCACGGCCGAAACAGCGCCACCGTCATCCTCACCAACTACAACGGTCTCACCAACAATGTTCGCTTTGCCAATGCCATGGGGTTCTTAATCGAACGCCCTCTCACTTTTTGCTCCTCACTCCTCAAACAATATCTTGACTTTGACGAGTGA ATGGCTGCTGCTCCTAAACTTTTATGTCTATTGATTGGCATTTCTTTCGTGGTTGCGGCGACCGCCGTCGTCTCGGACGAGCCTGACTTACCTTTCGTCGTCAATGGCTACGTCTACTGCGACACTTGCCGCTGTGGCTTCGAGACCAACGCCTCCATCCCCATCTCTGGTGCAAAAGTGAGACTAGAGTGCAGAGATAGAGCCAAATGGGTGTTGAAATTCAGAAAAGAAGCCATCACCAACTCTGAAGGAAAATACACCATTGATGTCTATGAAGACCACAAGGATGATAGCTGCAAGGTGGTTCTTGTGAGCAGCCCTCACCCTACCTGCAACCAGCCCGACCACGGCCGAAACAGCGCCACCGTCATCCTCACCAACTACAACGGTCTCACCAACAATGTTCGCTTTGCCAATGCCATGGGGTTCTTAATCGAACGCCCTCTCACTTTTTGCTCCTCACTCCTCAAACAATATCTTGACTTTGACGAGTGA MAAAPKLLCLLIGISFVVAATAVVSDEPDLPFVVNGYVYCDTCRCGFETNASIPISGAKVRLECRDRAKWVLKFRKEAITNSEGKYTIDVYEDHKDDSCKVVLVSSPHPTCNQPDHGRNSATVILTNYNGLTNNVRFANAMGFLIERPLTFCSSLLKQYLDFDE Homology
BLAST of Sed0019538 vs. NCBI nr
Match: XP_023525170.1 (protein DOWNSTREAM OF FLC-like isoform X2 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 252.7 bits (644), Expect = 2.2e-63 Identity = 125/162 (77.16%), Postives = 137/162 (84.57%), Query Frame = 0
BLAST of Sed0019538 vs. NCBI nr
Match: KAG6600638.1 (Protein DOWNSTREAM OF FLC, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031274.1 Protein DOWNSTREAM OF FLC, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 251.9 bits (642), Expect = 3.8e-63 Identity = 125/163 (76.69%), Postives = 136/163 (83.44%), Query Frame = 0
BLAST of Sed0019538 vs. NCBI nr
Match: XP_022941733.1 (protein DOWNSTREAM OF FLC-like [Cucurbita moschata]) HSP 1 Score: 251.9 bits (642), Expect = 3.8e-63 Identity = 125/163 (76.69%), Postives = 136/163 (83.44%), Query Frame = 0
BLAST of Sed0019538 vs. NCBI nr
Match: XP_022983080.1 (major pollen allergen Lol p 11-like [Cucurbita maxima]) HSP 1 Score: 249.6 bits (636), Expect = 1.9e-62 Identity = 124/163 (76.07%), Postives = 135/163 (82.82%), Query Frame = 0
BLAST of Sed0019538 vs. NCBI nr
Match: XP_022136800.1 (protein DOWNSTREAM OF FLC [Momordica charantia]) HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60 Identity = 115/162 (70.99%), Postives = 134/162 (82.72%), Query Frame = 0
BLAST of Sed0019538 vs. ExPASy Swiss-Prot
Match: P33050 (Pollen-specific protein C13 OS=Zea mays OX=4577 GN=MGS1 PE=2 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 3.1e-28 Identity = 68/162 (41.98%), Postives = 105/162 (64.81%), Query Frame = 0
BLAST of Sed0019538 vs. ExPASy Swiss-Prot
Match: Q9LX15 (Protein DOWNSTREAM OF FLC OS=Arabidopsis thaliana OX=3702 GN=DFC PE=2 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.0e-26 Identity = 68/154 (44.16%), Postives = 91/154 (59.09%), Query Frame = 0
BLAST of Sed0019538 vs. ExPASy Swiss-Prot
Match: Q29W25 (Pollen allergen Cro s 1 OS=Crocus sativus OX=82528 PE=1 SV=1) HSP 1 Score: 116.7 bits (291), Expect = 2.5e-25 Identity = 62/152 (40.79%), Postives = 93/152 (61.18%), Query Frame = 0
BLAST of Sed0019538 vs. ExPASy Swiss-Prot
Match: Q8LGR0 (Pollen allergen Che a 1 OS=Chenopodium album OX=3559 PE=1 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 9.4e-25 Identity = 62/152 (40.79%), Postives = 92/152 (60.53%), Query Frame = 0
BLAST of Sed0019538 vs. ExPASy Swiss-Prot
Match: Q8H6L7 (Pollen allergen Phl p 11 OS=Phleum pratense OX=15957 PE=1 SV=1) HSP 1 Score: 109.4 bits (272), Expect = 4.0e-23 Identity = 54/129 (41.86%), Postives = 78/129 (60.47%), Query Frame = 0
BLAST of Sed0019538 vs. ExPASy TrEMBL
Match: A0A6J1FSY1 (protein DOWNSTREAM OF FLC-like OS=Cucurbita moschata OX=3662 GN=LOC111447011 PE=3 SV=1) HSP 1 Score: 251.9 bits (642), Expect = 1.8e-63 Identity = 125/163 (76.69%), Postives = 136/163 (83.44%), Query Frame = 0
BLAST of Sed0019538 vs. ExPASy TrEMBL
Match: A0A6J1J4Q1 (major pollen allergen Lol p 11-like OS=Cucurbita maxima OX=3661 GN=LOC111481731 PE=3 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 9.0e-63 Identity = 124/163 (76.07%), Postives = 135/163 (82.82%), Query Frame = 0
BLAST of Sed0019538 vs. ExPASy TrEMBL
Match: A0A6J1C4Z4 (protein DOWNSTREAM OF FLC OS=Momordica charantia OX=3673 GN=LOC111008410 PE=3 SV=1) HSP 1 Score: 243.4 bits (620), Expect = 6.5e-61 Identity = 115/162 (70.99%), Postives = 134/162 (82.72%), Query Frame = 0
BLAST of Sed0019538 vs. ExPASy TrEMBL
Match: A0A5A7SZE2 (Major pollen allergen Lol p 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005880 PE=3 SV=1) HSP 1 Score: 233.0 bits (593), Expect = 8.7e-58 Identity = 116/162 (71.60%), Postives = 129/162 (79.63%), Query Frame = 0
BLAST of Sed0019538 vs. ExPASy TrEMBL
Match: A0A1S3BYB8 (major pollen allergen Lol p 11-like OS=Cucumis melo OX=3656 GN=LOC103494419 PE=3 SV=1) HSP 1 Score: 233.0 bits (593), Expect = 8.7e-58 Identity = 116/162 (71.60%), Postives = 129/162 (79.63%), Query Frame = 0
BLAST of Sed0019538 vs. TAIR 10
Match: AT4G08685.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 126.7 bits (317), Expect = 1.7e-29 Identity = 68/155 (43.87%), Postives = 92/155 (59.35%), Query Frame = 0
BLAST of Sed0019538 vs. TAIR 10
Match: AT5G10130.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 121.3 bits (303), Expect = 7.1e-28 Identity = 68/154 (44.16%), Postives = 91/154 (59.09%), Query Frame = 0
BLAST of Sed0019538 vs. TAIR 10
Match: AT1G78040.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 110.9 bits (276), Expect = 9.6e-25 Identity = 62/160 (38.75%), Postives = 92/160 (57.50%), Query Frame = 0
BLAST of Sed0019538 vs. TAIR 10
Match: AT1G78040.2 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 110.9 bits (276), Expect = 9.6e-25 Identity = 62/160 (38.75%), Postives = 92/160 (57.50%), Query Frame = 0
BLAST of Sed0019538 vs. TAIR 10
Match: AT1G29140.1 (Pollen Ole e 1 allergen and extensin family protein ) HSP 1 Score: 107.1 bits (266), Expect = 1.4e-23 Identity = 57/146 (39.04%), Postives = 87/146 (59.59%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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