Sed0019231 (gene) Chayote v1

Overview


Name	Sed0019231
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerases IV and V subunit 4-like
Location	LG10: 3502659 .. 3506979 (-)
RNA-Seq Expression	Sed0019231
Synteny	Sed0019231

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAATAACATTTTGTTAAATGAATCCCTGAGAAGTAAACTGAAACCACTCCCTCGCTCGCTCGCTCGTCCGATCAAACCAACAGGTCAATTTCTCCTTTCAATCCGCCATTGAAATCTCTCTTCACTGTTTTTCAATCCATAATCTAACAAAAAATCGTCTCATGAATGGCTTAATCTTCTCTTTCTGAACTAGGTTTAACCCAAGTGTAATCGAGGGAGCAATTTTCAGTAATGTCGGAGAAAGGCGAAAAGGGTTTTTCAGTGCCGAAGAAACCTGGAAAATCCTCCCTCAAATCTTCGGCTCCCAAGGATGGTTCGTGTTCTTTCTCTTTTACGCTTAATTTGTTTGCCCAATGTATCTATTTGTTCTTCCTGGTTTGCTGTATAGCTTCTCTGAAAGGGAAGGATGATGGTTTGTCAAAATCAAAGAAGGGAAGGAAAGTTCAGTTCGATTCACCAGGTGAAATGTCTTTTCTGTTGCCCTAATTACGACTCTCTGTATGTTATACAAGTCATTTGATGTAGCAATGTACATGCAGGATCGGTTGATGCTCATACCAATTTTTCAATGAAATTCAGTGGCAAAAATGGTAGTGGTTTTAAATCCTCATTTCGTTTTCAGTTTTAGTCTTGTCTTTCGTCCCTTAGTGGCGGCCTCGTTGGTTGAGGTTTGGGGCTTCCTAAGTATGCTCCCATGAAGGTCCCAGGTTCGAGACCACGAGTTGAGCTTACGTGTAAAATCCCTCTCCTGGGTCATCGATTTTTTTTACTCTATCATTCTACTGCTCTGTCTCTTCATCTACCTGTTGTTTGTTATGTTTCTGCTAATGAAACTACTGGGTTTCTCTCCTTTGCAACCGTTCTTGCAGGTGACTTGGGTAAAGGAGGAAAAGGTGTAAATGGTGCAAAGGCTTCTGCTCCAAAGGAACCACAACCTCTAGAATTGAAGATTGAGCAAGGTGGGTACTGCCGTGCCTTTTATTATTGTTTTATTTGGCAGGGATATAACCATTTCTGTATGGTCATCTCATCAGTGTATTGGTTTTTACTATTACTCATATTATGGAAGATTAGAATTGCCTTGCCTTTTTCTTTGAGTTGCCTTCCTCTATCTTCTGATATATGATGTTTATTGACATGTGGTCAACAATTCCTTGAGGAACTAAGAGGTGATGAGTTCAATCTATGGTGGCTATTTACGTAGGAATTAATATTCTATGGGTATCTTTGACATCCAAATGTTGTAGGATGAGGCGATATGTCCCATAAAAATAGTCGAAATGCACTTAAGCTGGTTTGGACAGGCACACATATAAAAAAATGATGTTTTTTCATATTTATGTTTGGCCTGGTATCTTCTAATTCAATTTAAAATTCAGTTTTCTTTGTAGGAAATATAGTCATCTTCTTTTATCTTCTTAGAAGTTTTTATAGTTATTCTTCATTTTAAGAAATCTTAATGCTAGTGTTGTTCATCTTTGTGTGGTTTTCCCCATTCTATGGTCAACTGATTGTTTTCTCTCATAGGCCGTATTTCTATTTTATTTGTTACTGCTTGGATAAGAGATTGGTTTCAAGTATGTCTCTTAGAATGTTAGTTATTTGTTCCATGAAATTTGTTGAGGGTATTTGTTATGCTATCTAATTATATTTATGTTGTTTATGGTTGTGTTGGTTTTAAATTGGCGTGCAGAACTTCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAGGCTGCACAACTTTTACAGGGAATCCAGGATCAGATGGTTCTTCTATCAGCAGATCCGACCATAAAAATCCCTGCGTAAGTGAATCATGAATGTTATTAACTATTTATTGAAGAGAACAATTTTACTCGTTTACTAACTTGAATTTTTTTTTATCTTAGGTCATTTGATAGGGGAATGCAATATGCAAAAAGAGCCAACCACTATGTGAATACCGAGTCGGTTAGACCAGTTCTTGAGTATCCTTGGTTTGATGATTAAGCTACTAGATTATATTAACAATTTATTTTCCTTTTCTATGGATGGAAACAATTCATATTCTACTGTGGAAGCATGCTCTTGTACCTTCAGCACTCCTAGTGTGCTGTATGGTGCTGTTTTTTGTTCTAGTCCGTTCAAATTCTGTTGATTGCTTAACTGAAAATTTTAGAACTCTCAAGAAATATGGTGTATCGGACAGTGAGGTAGTTAGCTCTATCTTCCTTTTTCCCCTTTTAACAATTATTTATTTTTGAATGATGAACTGATCCGGTATTAATCTTAACGCAGATATGTGTGATTGCTAATGTCTCTCCAGACACTATTGATGAAGTTTTTGCTCTTGTTCCATCCTTGAAGGTACTGTATAAGTTTTTGTAGTTTCTGAAATTTACATCACCATGCCATATGAATGAATATAGAATATAGATCAACACATATTTAGTTACAATACTTAGATTCTTGTACTGTTTTGTTCTTGTATTTTCTTTTACAAGTTATTCATTATACTTTATAAATGTAACAATTTTTTATTACTAATAAGTTTCCACTAAAAGATGGAGAATAATTTAGGGATTTGAAAAATAGCATGCCTCCTGTTCGGGTAAAATATATACATGTGTCACCAGTTACATTATTATGAGAAAATAGATAAGAAAGGAGCTAAAAATGTACAGGGACTACATTGTAGGATAAGAAATGGAAACCTTATAAGAGCGATGGTATAAGAATATAAAATGTACCTTCGGTCAATTTAGGAAGTCTAACTTAGATTTTAATAAGATGTTAGTTCATAGCGTGGACCAAGTTTCGACTCGGTATTCTCAATTACATAGTGGCTGGCTCTTTTTGCATATTGCGTTCCCCTATCAAATGCTCTAACATATAAGCATCTAAAGGTGATAGGTTCAATCTATAATGATCACCTACCTAAGAAATAATTTCCTAAGGTCAGACGGTATGTCTCGTGAGAATAGTCGAGGTGCGTGTAAGATCACCTGAACATTCACAGATGTCAAAAAAAAAGAAAAGAAAAGAAAATGTTCATAGCATACTGATAGATCTAAGAAGGGTGTGAGCATTTCTATTTATTTATTTAAAAAAATGAGAAACTCGTAACTTAATTTTAAGAAAACGAGGCAAAGGGAGCCCTGAGTTACAAAAGACAATCCAAATTAACCAGGAGGGATGCAAGAATGTAATCACAATTCACAAAAGTAAGGAGAAAATTTACACCAAGAGATAGCTACATAAAGCAAGTTATCAAAGATGCTTTCCACTATGCATTGATTCTAATAGGTAGTGAAACACTGTTAATAGATAGAAATGTGTGCTTAATTAGTCAAGGGGTGGCACAACGGTTGAAGACTTGGGCTTTGAGGGTATACTCCCCTCAAAGTCTTGAGTTCGAGTCTTCCTTGTAACAATACTCCTTCGATGTTTCCGGTGCCTGGCCTAGGGACGGGCGTGGTTACCTTATTTCAAAAAAAAAATGTGTGCTTAATTAGTCAATATTTGAAAGATGCTTCCTACACACTATTAGTGGTCTTTAATAGAATGGGGTTGGATTGATTATGCATTATTGGAATGCAGTTCCTTTCCTATGACTATGATTTATGATCAGGCCCGTTTAGGAGTAGGATAAACATATTAAACTATAAATAAGAGAGGATAGGAAAGTAAGGAGATATTGAGTAGTATTGAGATAGTGAGTATTTAGGGCTTGAGAGTGGTCTCAAGATTAGGAGGGTCCAAGTACCTTTAACACTTGGGTTAATTAGTATCTTTATTATTCTTTTATTTAAATATATATTTGGTTCTTATGAATTTATTAATTTGTTTTACTTCAACATGGTTCCATACAAAGCAGAGCAAAAGAAGTAAGCTAAGTGAACCTCTCAACCATGTCTTGAGCGAGCTAGCCAAGCTAAAATCATCCTGAAATCACAATGTTGGTTGCTTGCTGTTGCCGGTGCTCGGGTCCGGTTGCCTTCTCCCTTTCCTCCTAGGAAGTTTGTTTTATTGGGCTTAGAAAATTAGAACTCATTTCTTTTCCTAGGGGAGGTTAAAGTTAGCTCATTGGAATCTTTTGTTCTTAGAAGAAATGTGGGTTACTCTCTTAGCTGAATCAACTCAGATAGACTGATTATCAAATAGAAAACCAGTATGGATTTAATGTGAAGTGAGGATGTTAAGGGAGTAGTTTCTACTGGATGCTACACATGTTTGACTGTTTATTTATGTAGTTAATATATGTTACATCAAGCCACTGTTTGTCCTCAAAAGAAACCGGTTGAGTTCTAATGATCGAGAGATTTGAACGTGC

mRNA sequence

CTCAAATAACATTTTGTTAAATGAATCCCTGAGAAGTAAACTGAAACCACTCCCTCGCTCGCTCGCTCGTCCGATCAAACCAACAGGTTTAACCCAAGTGTAATCGAGGGAGCAATTTTCAGTAATGTCGGAGAAAGGCGAAAAGGGTTTTTCAGTGCCGAAGAAACCTGGAAAATCCTCCCTCAAATCTTCGGCTCCCAAGGATGCTTCTCTGAAAGGGAAGGATGATGGTTTGTCAAAATCAAAGAAGGGAAGGAAAGTTCAGTTCGATTCACCAGGATCGGTTGATGCTCATACCAATTTTTCAATGAAATTCAGTGGCAAAAATGGTGACTTGGGTAAAGGAGGAAAAGGTGTAAATGGTGCAAAGGCTTCTGCTCCAAAGGAACCACAACCTCTAGAATTGAAGATTGAGCAAGAACTTCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAGGCTGCACAACTTTTACAGGGAATCCAGGATCAGATGGTTCTTCTATCAGCAGATCCGACCATAAAAATCCCTGCGTCATTTGATAGGGGAATGCAATATGCAAAAAGAGCCAACCACTATGTGAATACCGAGTCGGTTAGACCAGTTCTTGAAACTCTCAAGAAATATGGTGTATCGGACAGTGAGATATGTGTGATTGCTAATGTCTCTCCAGACACTATTGATGAAGTTTTTGCTCTTGTTCCATCCTTGAAGAGCAAAAGAAGTAAGCTAAGTGAACCTCTCAACCATGTCTTGAGCGAGCTAGCCAAGCTAAAATCATCCTGAAATCACAATGTTGGTTGCTTGCTGTTGCCGGTGCTCGGGTCCGGTTGCCTTCTCCCTTTCCTCCTAGGAAGTTTGTTTTATTGGGCTTAGAAAATTAGAACTCATTTCTTTTCCTAGGGGAGGTTAAAGTTAGCTCATTGGAATCTTTTGTTCTTAGAAGAAATGTGGGTTACTCTCTTAGCTGAATCAACTCAGATAGACTGATTATCAAATAGAAAACCAGTATGGATTTAATGTGAAGTGAGGATGTTAAGGGAGTAGTTTCTACTGGATGCTACACATGTTTGACTGTTTATTTATGTAGTTAATATATGTTACATCAAGCCACTGTTTGTCCTCAAAAGAAACCGGTTGAGTTCTAATGATCGAGAGATTTGAACGTGC

Coding sequence (CDS)

ATGTCGGAGAAAGGCGAAAAGGGTTTTTCAGTGCCGAAGAAACCTGGAAAATCCTCCCTCAAATCTTCGGCTCCCAAGGATGCTTCTCTGAAAGGGAAGGATGATGGTTTGTCAAAATCAAAGAAGGGAAGGAAAGTTCAGTTCGATTCACCAGGATCGGTTGATGCTCATACCAATTTTTCAATGAAATTCAGTGGCAAAAATGGTGACTTGGGTAAAGGAGGAAAAGGTGTAAATGGTGCAAAGGCTTCTGCTCCAAAGGAACCACAACCTCTAGAATTGAAGATTGAGCAAGAACTTCCCAAGAATGTTAAATGCCAATGCCTTATGGACTGTGAGGCTGCACAACTTTTACAGGGAATCCAGGATCAGATGGTTCTTCTATCAGCAGATCCGACCATAAAAATCCCTGCGTCATTTGATAGGGGAATGCAATATGCAAAAAGAGCCAACCACTATGTGAATACCGAGTCGGTTAGACCAGTTCTTGAAACTCTCAAGAAATATGGTGTATCGGACAGTGAGATATGTGTGATTGCTAATGTCTCTCCAGACACTATTGATGAAGTTTTTGCTCTTGTTCCATCCTTGAAGAGCAAAAGAAGTAAGCTAAGTGAACCTCTCAACCATGTCTTGAGCGAGCTAGCCAAGCTAAAATCATCCTGA

Protein sequence

MSEKGEKGFSVPKKPGKSSLKSSAPKDASLKGKDDGLSKSKKGRKVQFDSPGSVDAHTNFSMKFSGKNGDLGKGGKGVNGAKASAPKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPASFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIANVSPDTIDEVFALVPSLKSKRSKLSEPLNHVLSELAKLKSS

Homology

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BLAST of Sed0019231 vs. NCBI nr
Match: XP_023003382.1 (DNA-directed RNA polymerases IV and V subunit 4-like [Cucurbita maxima])

HSP 1 Score: 379.0 bits (972), Expect = 2.7e-101
Identity = 200/221 (90.50%), Postives = 206/221 (93.21%), Query Frame = 0


Query: 1   MSEKGEKGFSVPKKPGKSSLKSSAPKDASLKGKDDGLSKSKKGRKVQFDSPGSVDAHTNF 60
           MSEKGEKGF V KKPGKSSLKS A KDASLKGKDD LSKSKKGRKVQFD+ GSVDAH N 
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSLASKDASLKGKDDSLSKSKKGRKVQFDAQGSVDAHINL 60

Query: 61  SMKFSGKNGDLGKGGKGVNGAKASAPKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120
           SMKF GKNGDLGKGGKG+NG KAS  KE QPLELKIEQELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SMKFGGKNGDLGKGGKGINGGKASVSKEQQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVLLSADPTIKIPASFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIA 180
           IQDQMVLLSADPTIKIP SFDRG+QYAKRANHYVNTESVRPVLETLKKYGV+DSEICVIA
Sbjct: 121 IQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVADSEICVIA 180

Query: 181 NVSPDTIDEVFALVPSLKSKRSKLSEPLNHVLSELAKLKSS 222
           NV PDTIDEVFALVPSLKSKRSKL+EPLN+VLSELAKLKSS
Sbjct: 181 NVCPDTIDEVFALVPSLKSKRSKLTEPLNNVLSELAKLKSS 221

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BLAST of Sed0019231 vs. NCBI nr
Match: KAG6594716.1 (DNA-directed RNA polymerases IV and V subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 376.7 bits (966), Expect = 1.4e-100
Identity = 199/221 (90.05%), Postives = 206/221 (93.21%), Query Frame = 0


Query: 1   MSEKGEKGFSVPKKPGKSSLKSSAPKDASLKGKDDGLSKSKKGRKVQFDSPGSVDAHTNF 60
           MSEKGEKGF V KKPGKSSLKSSA KDASLKGKDD LSKSKKGRKVQFD+ GSVDA  N 
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSSASKDASLKGKDDSLSKSKKGRKVQFDAQGSVDAQINL 60

Query: 61  SMKFSGKNGDLGKGGKGVNGAKASAPKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120
           S+KFSGKNGDLGKGGKG+NG KAS  KE QPLELKIEQELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SLKFSGKNGDLGKGGKGINGGKASVSKEQQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVLLSADPTIKIPASFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIA 180
           IQDQMVLLSADPTIKIP SFDRG+QYAKRANHYVNTESVRPVLETLKKYGV+DSEICVIA
Sbjct: 121 IQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVADSEICVIA 180

Query: 181 NVSPDTIDEVFALVPSLKSKRSKLSEPLNHVLSELAKLKSS 222
           NV PDT DEVFALVPSLKSKRSKL+EPLN+VLSELAKLKSS
Sbjct: 181 NVCPDTTDEVFALVPSLKSKRSKLTEPLNNVLSELAKLKSS 221

[Close]

BLAST of Sed0019231 vs. NCBI nr
Match: XP_023517145.1 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023517146.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 374.0 bits (959), Expect = 8.8e-100
Identity = 198/221 (89.59%), Postives = 205/221 (92.76%), Query Frame = 0


Query: 1   MSEKGEKGFSVPKKPGKSSLKSSAPKDASLKGKDDGLSKSKKGRKVQFDSPGSVDAHTNF 60
           MSEKGEKGF V KKPGKSSLKSSA KDASLKGKDD LSKSKKGRKVQFD+ GSVDA  N 
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSSASKDASLKGKDDSLSKSKKGRKVQFDAQGSVDAQINL 60

Query: 61  SMKFSGKNGDLGKGGKGVNGAKASAPKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120
           S+KFSGKNGDLGKGGKG+NG KAS  KE QPLELKIE ELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SLKFSGKNGDLGKGGKGINGGKASVSKEQQPLELKIELELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVLLSADPTIKIPASFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIA 180
           IQDQMVLLSADPTIKIP SFDRG+QYAKRANHYVNTESVRPVLETLKKYGV+DSEICVIA
Sbjct: 121 IQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVADSEICVIA 180

Query: 181 NVSPDTIDEVFALVPSLKSKRSKLSEPLNHVLSELAKLKSS 222
           NV PDT DEVFALVPSLKSKRSKL+EPLN+VLSELAKLKSS
Sbjct: 181 NVCPDTTDEVFALVPSLKSKRSKLTEPLNNVLSELAKLKSS 221

[Close]

BLAST of Sed0019231 vs. NCBI nr
Match: XP_022926857.1 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Cucurbita moschata] >XP_022926858.1 DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 369.4 bits (947), Expect = 2.2e-98
Identity = 195/221 (88.24%), Postives = 203/221 (91.86%), Query Frame = 0


Query: 1   MSEKGEKGFSVPKKPGKSSLKSSAPKDASLKGKDDGLSKSKKGRKVQFDSPGSVDAHTNF 60
           MSEKGEKGF V KKPGKSSLKSSA KDASLKGKDD LSKSKKGRKVQFD+ GSVDA  N 
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSSASKDASLKGKDDSLSKSKKGRKVQFDAQGSVDAQINL 60

Query: 61  SMKFSGKNGDLGKGGKGVNGAKASAPKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120
           S+KFSGKNGDLGKGGKG+NG KAS  KE QPLELKIEQELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SLKFSGKNGDLGKGGKGINGGKASVSKEQQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVLLSADPTIKIPASFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIA 180
           IQDQM LLSADPTIKIP SFDRG+QYAKRANHYVNTE VRPVLETLKKYGV+DSEICVIA
Sbjct: 121 IQDQMALLSADPTIKIPTSFDRGLQYAKRANHYVNTELVRPVLETLKKYGVADSEICVIA 180

Query: 181 NVSPDTIDEVFALVPSLKSKRSKLSEPLNHVLSELAKLKSS 222
           NV PDT DEVF+LVPSLKSKRSKL+EPLN+VL ELAKLKSS
Sbjct: 181 NVCPDTTDEVFSLVPSLKSKRSKLTEPLNNVLIELAKLKSS 221

[Close]

BLAST of Sed0019231 vs. NCBI nr
Match: XP_023517147.1 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 362.1 bits (928), Expect = 3.5e-96
Identity = 194/221 (87.78%), Postives = 201/221 (90.95%), Query Frame = 0


Query: 1   MSEKGEKGFSVPKKPGKSSLKSSAPKDASLKGKDDGLSKSKKGRKVQFDSPGSVDAHTNF 60
           MSEKGEKGF V KKPGKSSLKSSA KD    GKDD LSKSKKGRKVQFD+ GSVDA  N 
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSSASKD----GKDDSLSKSKKGRKVQFDAQGSVDAQINL 60

Query: 61  SMKFSGKNGDLGKGGKGVNGAKASAPKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120
           S+KFSGKNGDLGKGGKG+NG KAS  KE QPLELKIE ELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SLKFSGKNGDLGKGGKGINGGKASVSKEQQPLELKIELELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVLLSADPTIKIPASFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIA 180
           IQDQMVLLSADPTIKIP SFDRG+QYAKRANHYVNTESVRPVLETLKKYGV+DSEICVIA
Sbjct: 121 IQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVADSEICVIA 180

Query: 181 NVSPDTIDEVFALVPSLKSKRSKLSEPLNHVLSELAKLKSS 222
           NV PDT DEVFALVPSLKSKRSKL+EPLN+VLSELAKLKSS
Sbjct: 181 NVCPDTTDEVFALVPSLKSKRSKLTEPLNNVLSELAKLKSS 217

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BLAST of Sed0019231 vs. ExPASy Swiss-Prot
Match: Q6DBA5 (DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPD4 PE=1 SV=2)

HSP 1 Score: 155.2 bits (391), Expect = 8.5e-37
Identity = 105/226 (46.46%), Postives = 134/226 (59.29%), Query Frame = 0


Query: 1   MSEKGEKGFSVPKKPGKSSLKSSAPKDASLKGKDDGLSKSKKGRKVQFD--SPGSVDAHT 60
           MSEKG KG        KSSLKS   KD    GKD   +K KKGRK+ FD  +P +     
Sbjct: 1   MSEKGGKGL-------KSSLKS---KDG---GKDGSSTKLKKGRKIHFDQRTPPANYKIL 60

Query: 61  NFS---MKFSGKNGDLGKGGKGVNGAKASAPKEPQPLELKIEQELPKNVKCQCLMDCEAA 120
           N S     F       GK  K    +K S        ELK   +LP+N   +C+MDCEA 
Sbjct: 61  NVSSDQQPFQSSAAKCGKSDKPTKSSKNSL----HSFELK---DLPEN--AECMMDCEAF 120

Query: 121 QLLQGIQDQMVLLSADPTIKIPASFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSE 180
           Q+L GI+ Q+V LS DP+IKIP S+DR + Y +   HY N +SVR VLE LK YG+SD E
Sbjct: 121 QILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGE 180

Query: 181 ICVIANVSPDTIDEVFALVPSLKSKRSKLSEPLNHVLSELAKLKSS 222
           +CVIAN S +++DEV A +PSLK+K+  +++PL   L EL+KLK S
Sbjct: 181 MCVIANASSESVDEVLAFIPSLKTKKEVINQPLQDALEELSKLKKS 204

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BLAST of Sed0019231 vs. ExPASy Swiss-Prot
Match: O48890 (DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB4 PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.7e-18
Identity = 49/137 (35.77%), Postives = 87/137 (63.50%), Query Frame = 0


Query: 84  SAPKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPASFDRG 143
           S  +E    ELKI  E    +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ 
Sbjct: 2   SGEEEENAAELKIGDEF---LKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKS 61

Query: 144 MQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIANVSPDTIDEVFALVPSLKSK-RS 203
           +QY KR + Y N ++VR V E L ++ +++ E+CV+ N+ P+T++E  A+VPSLK+K R+
Sbjct: 62  LQYVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRA 121

Query: 204 KLSEPLNHVLSELAKLK 220
              E +  +L++L+ +K
Sbjct: 122 HDDEAIEKMLNDLSLVK 135

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BLAST of Sed0019231 vs. ExPASy Swiss-Prot
Match: Q54S04 (DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689 GN=polr2d PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.5e-05
Identity = 26/81 (32.10%), Postives = 45/81 (55.56%), Query Frame = 0


Query: 139 SFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIANVSPDTIDEVFALVPSLK 198
           +F + + YA++ + Y N  S++ V   L K  + + EI  +AN+ P+  DE  +L+PSLK
Sbjct: 75  TFHKTLAYAEKFSRYKNKTSIKQVRTALSKQNLEEFEIASLANLCPEISDEAKSLIPSLK 134

Query: 199 SKRSKLSEPLNHVLSELAKLK 220
                  + L  +L EL+ L+
Sbjct: 135 KME---DDELQAILDELSNLR 152

[Close]

BLAST of Sed0019231 vs. ExPASy TrEMBL
Match: A0A6J1KMD1 (DNA-directed RNA polymerases IV and V subunit 4-like OS=Cucurbita maxima OX=3661 GN=LOC111497005 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 1.3e-101
Identity = 200/221 (90.50%), Postives = 206/221 (93.21%), Query Frame = 0


Query: 1   MSEKGEKGFSVPKKPGKSSLKSSAPKDASLKGKDDGLSKSKKGRKVQFDSPGSVDAHTNF 60
           MSEKGEKGF V KKPGKSSLKS A KDASLKGKDD LSKSKKGRKVQFD+ GSVDAH N 
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSLASKDASLKGKDDSLSKSKKGRKVQFDAQGSVDAHINL 60

Query: 61  SMKFSGKNGDLGKGGKGVNGAKASAPKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120
           SMKF GKNGDLGKGGKG+NG KAS  KE QPLELKIEQELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SMKFGGKNGDLGKGGKGINGGKASVSKEQQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVLLSADPTIKIPASFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIA 180
           IQDQMVLLSADPTIKIP SFDRG+QYAKRANHYVNTESVRPVLETLKKYGV+DSEICVIA
Sbjct: 121 IQDQMVLLSADPTIKIPTSFDRGLQYAKRANHYVNTESVRPVLETLKKYGVADSEICVIA 180

Query: 181 NVSPDTIDEVFALVPSLKSKRSKLSEPLNHVLSELAKLKSS 222
           NV PDTIDEVFALVPSLKSKRSKL+EPLN+VLSELAKLKSS
Sbjct: 181 NVCPDTIDEVFALVPSLKSKRSKLTEPLNNVLSELAKLKSS 221

[Close]

BLAST of Sed0019231 vs. ExPASy TrEMBL
Match: A0A6J1EJD9 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111433844 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.1e-98
Identity = 195/221 (88.24%), Postives = 203/221 (91.86%), Query Frame = 0


Query: 1   MSEKGEKGFSVPKKPGKSSLKSSAPKDASLKGKDDGLSKSKKGRKVQFDSPGSVDAHTNF 60
           MSEKGEKGF V KKPGKSSLKSSA KDASLKGKDD LSKSKKGRKVQFD+ GSVDA  N 
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSSASKDASLKGKDDSLSKSKKGRKVQFDAQGSVDAQINL 60

Query: 61  SMKFSGKNGDLGKGGKGVNGAKASAPKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120
           S+KFSGKNGDLGKGGKG+NG KAS  KE QPLELKIEQELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SLKFSGKNGDLGKGGKGINGGKASVSKEQQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVLLSADPTIKIPASFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIA 180
           IQDQM LLSADPTIKIP SFDRG+QYAKRANHYVNTE VRPVLETLKKYGV+DSEICVIA
Sbjct: 121 IQDQMALLSADPTIKIPTSFDRGLQYAKRANHYVNTELVRPVLETLKKYGVADSEICVIA 180

Query: 181 NVSPDTIDEVFALVPSLKSKRSKLSEPLNHVLSELAKLKSS 222
           NV PDT DEVF+LVPSLKSKRSKL+EPLN+VL ELAKLKSS
Sbjct: 181 NVCPDTTDEVFSLVPSLKSKRSKLTEPLNNVLIELAKLKSS 221

[Close]

BLAST of Sed0019231 vs. ExPASy TrEMBL
Match: A0A1S3B2C2 (DNA-directed RNA polymerases IV and V subunit 4 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485216 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.9e-95
Identity = 191/221 (86.43%), Postives = 202/221 (91.40%), Query Frame = 0


Query: 1   MSEKGEKGFSVPKKPGKSSLKSSAPKDASLKGKDDGLSKSKKGRKVQFDSPGSVDAHTNF 60
           MSEKGEKGFSV KKP KSSLKSSA KDASLKGKDD LSK KKGRKVQFD+ GSVDA  +F
Sbjct: 1   MSEKGEKGFSVQKKPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDAPNSF 60

Query: 61  SMKFSGKNGDLGKGGKGVNGAKASAPKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120
           SMK+SGKNGD+GKGGKG N  KAS  KEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SMKYSGKNGDMGKGGKGAN-TKASVAKEPQSLELKIEQELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVLLSADPTIKIPASFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIA 180
           IQDQMV LSADPTIKIP SFDRG+QYAKRANHYVN ESVRPVLETLKKYG++DSEICVIA
Sbjct: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGITDSEICVIA 180

Query: 181 NVSPDTIDEVFALVPSLKSKRSKLSEPLNHVLSELAKLKSS 222
           NV PDT DEVFAL+PSLK+KRSKLSEPLN+VLSELAK+KSS
Sbjct: 181 NVCPDTTDEVFALLPSLKNKRSKLSEPLNNVLSELAKVKSS 220

[Close]

BLAST of Sed0019231 vs. ExPASy TrEMBL
Match: A0A6J1EGC4 (DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111433844 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 4.1e-95
Identity = 191/221 (86.43%), Postives = 199/221 (90.05%), Query Frame = 0


Query: 1   MSEKGEKGFSVPKKPGKSSLKSSAPKDASLKGKDDGLSKSKKGRKVQFDSPGSVDAHTNF 60
           MSEKGEKGF V KKPGKSSLKSSA KD    GKDD LSKSKKGRKVQFD+ GSVDA  N 
Sbjct: 1   MSEKGEKGFPVQKKPGKSSLKSSASKD----GKDDSLSKSKKGRKVQFDAQGSVDAQINL 60

Query: 61  SMKFSGKNGDLGKGGKGVNGAKASAPKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120
           S+KFSGKNGDLGKGGKG+NG KAS  KE QPLELKIEQELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SLKFSGKNGDLGKGGKGINGGKASVSKEQQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVLLSADPTIKIPASFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIA 180
           IQDQM LLSADPTIKIP SFDRG+QYAKRANHYVNTE VRPVLETLKKYGV+DSEICVIA
Sbjct: 121 IQDQMALLSADPTIKIPTSFDRGLQYAKRANHYVNTELVRPVLETLKKYGVADSEICVIA 180

Query: 181 NVSPDTIDEVFALVPSLKSKRSKLSEPLNHVLSELAKLKSS 222
           NV PDT DEVF+LVPSLKSKRSKL+EPLN+VL ELAKLKSS
Sbjct: 181 NVCPDTTDEVFSLVPSLKSKRSKLTEPLNNVLIELAKLKSS 217

[Close]

BLAST of Sed0019231 vs. ExPASy TrEMBL
Match: A0A0A0KH45 (RPOL4c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G510870 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 9.2e-95
Identity = 191/221 (86.43%), Postives = 200/221 (90.50%), Query Frame = 0


Query: 1   MSEKGEKGFSVPKKPGKSSLKSSAPKDASLKGKDDGLSKSKKGRKVQFDSPGSVDAHTNF 60
           MSEKGEKGFSV K+P KSSLKSSA KDASLKGKDD LSK KKGRKVQFD+ GSVDA   F
Sbjct: 1   MSEKGEKGFSVQKRPAKSSLKSSALKDASLKGKDDSLSKLKKGRKVQFDAQGSVDATNTF 60

Query: 61  SMKFSGKNGDLGKGGKGVNGAKASAPKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQG 120
           SMK+SGKNGDLGKGGKG N  KAS  KEPQ LELKIEQELPKNVKCQCLMDCEAAQLLQG
Sbjct: 61  SMKYSGKNGDLGKGGKGAN-TKASIAKEPQALELKIEQELPKNVKCQCLMDCEAAQLLQG 120

Query: 121 IQDQMVLLSADPTIKIPASFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIA 180
           IQDQMV LSADPTIKIP SFDRG+QYAKRANHYVN ESVRPVLETLKKYGV+DSEICVIA
Sbjct: 121 IQDQMVFLSADPTIKIPTSFDRGLQYAKRANHYVNAESVRPVLETLKKYGVTDSEICVIA 180

Query: 181 NVSPDTIDEVFALVPSLKSKRSKLSEPLNHVLSELAKLKSS 222
           NV PDT DEVFAL+PSLK KRSKLSEP+N+VLSELAK+KSS
Sbjct: 181 NVCPDTTDEVFALLPSLKRKRSKLSEPINNVLSELAKVKSS 220

[Close]

BLAST of Sed0019231 vs. TAIR 10
Match: AT4G15950.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 155.2 bits (391), Expect = 6.0e-38
Identity = 105/226 (46.46%), Postives = 134/226 (59.29%), Query Frame = 0


Query: 1   MSEKGEKGFSVPKKPGKSSLKSSAPKDASLKGKDDGLSKSKKGRKVQFD--SPGSVDAHT 60
           MSEKG KG        KSSLKS   KD    GKD   +K KKGRK+ FD  +P +     
Sbjct: 1   MSEKGGKGL-------KSSLKS---KDG---GKDGSSTKLKKGRKIHFDQRTPPANYKIL 60

Query: 61  NFS---MKFSGKNGDLGKGGKGVNGAKASAPKEPQPLELKIEQELPKNVKCQCLMDCEAA 120
           N S     F       GK  K    +K S        ELK   +LP+N   +C+MDCEA 
Sbjct: 61  NVSSDQQPFQSSAAKCGKSDKPTKSSKNSL----HSFELK---DLPEN--AECMMDCEAF 120

Query: 121 QLLQGIQDQMVLLSADPTIKIPASFDRGMQYAKRANHYVNTESVRPVLETLKKYGVSDSE 180
           Q+L GI+ Q+V LS DP+IKIP S+DR + Y +   HY N +SVR VLE LK YG+SD E
Sbjct: 121 QILDGIKGQLVGLSEDPSIKIPVSYDRALAYVESCVHYTNPQSVRKVLEPLKTYGISDGE 180

Query: 181 ICVIANVSPDTIDEVFALVPSLKSKRSKLSEPLNHVLSELAKLKSS 222
           +CVIAN S +++DEV A +PSLK+K+  +++PL   L EL+KLK S
Sbjct: 181 MCVIANASSESVDEVLAFIPSLKTKKEVINQPLQDALEELSKLKKS 204

[Close]

BLAST of Sed0019231 vs. TAIR 10
Match: AT5G09920.1 (RNA polymerase II, Rpb4, core protein )

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-19
Identity = 49/137 (35.77%), Postives = 87/137 (63.50%), Query Frame = 0


Query: 84  SAPKEPQPLELKIEQELPKNVKCQCLMDCEAAQLLQGIQDQMVLLSADPTIKIPASFDRG 143
           S  +E    ELKI  E    +K +CLM+CE + +L+   +Q+  +S DP  ++   F++ 
Sbjct: 2   SGEEEENAAELKIGDEF---LKAKCLMNCEVSLILEHKFEQLQQISEDPMNQVSQVFEKS 61

Query: 144 MQYAKRANHYVNTESVRPVLETLKKYGVSDSEICVIANVSPDTIDEVFALVPSLKSK-RS 203
           +QY KR + Y N ++VR V E L ++ +++ E+CV+ N+ P+T++E  A+VPSLK+K R+
Sbjct: 62  LQYVKRFSRYKNPDAVRQVREILSRHQLTEFELCVLGNLCPETVEEAVAMVPSLKTKGRA 121

Query: 204 KLSEPLNHVLSELAKLK 220
              E +  +L++L+ +K
Sbjct: 122 HDDEAIEKMLNDLSLVK 135

The following BLAST results are available for this feature:

BLAST of Sed0019231 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023003382.1	2.7e-101	90.50	DNA-directed RNA polymerases IV and V subunit 4-like [Cucurbita maxima]	[more]
KAG6594716.1	1.4e-100	90.05	DNA-directed RNA polymerases IV and V subunit 4, partial [Cucurbita argyrosperma...	[more]
XP_023517145.1	8.8e-100	89.59	DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Cucurbita pepo ...	[more]
XP_022926857.1	2.2e-98	88.24	DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 [Cucurbita mosch...	[more]
XP_023517147.1	3.5e-96	87.78	DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 [Cucurbita pepo ...	[more]

BLAST of Sed0019231 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DBA5	8.5e-37	46.46	DNA-directed RNA polymerases IV and V subunit 4 OS=Arabidopsis thaliana OX=3702 ...	[more]
O48890	6.7e-18	35.77	DNA-directed RNA polymerase II subunit 4 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q54S04	6.5e-05	32.10	DNA-directed RNA polymerase II subunit rpb4 OS=Dictyostelium discoideum OX=44689...	[more]

BLAST of Sed0019231 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KMD1	1.3e-101	90.50	DNA-directed RNA polymerases IV and V subunit 4-like OS=Cucurbita maxima OX=3661...	[more]
A0A6J1EJD9	1.1e-98	88.24	DNA-directed RNA polymerases IV and V subunit 4-like isoform X1 OS=Cucurbita mos...	[more]
A0A1S3B2C2	1.9e-95	86.43	DNA-directed RNA polymerases IV and V subunit 4 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1EGC4	4.1e-95	86.43	DNA-directed RNA polymerases IV and V subunit 4-like isoform X2 OS=Cucurbita mos...	[more]
A0A0A0KH45	9.2e-95	86.43	RPOL4c domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G510870 PE=4...	[more]

BLAST of Sed0019231 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15950.1	6.0e-38	46.46	RNA polymerase II, Rpb4, core protein	[more]
AT5G09920.1	4.8e-19	35.77	RNA polymerase II, Rpb4, core protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006590	RNA polymerase Rpb4/RPC9, core	SMART	SM00657	rpol4neu2	coord: 126..245 e-value: 8.7E-5 score: 23.7
IPR005574	RNA polymerase subunit RPB4/RPC9	PFAM	PF03874	RNA_pol_Rpb4	coord: 157..243 e-value: 4.6E-9 score: 36.6
IPR038324	Rpb4/RPC9 superfamily	GENE3D	1.20.1250.40		coord: 111..246 e-value: 2.6E-28 score: 100.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..112
None	No IPR available	PANTHER	PTHR21297:SF2	DNA-DIRECTED RNA POLYMERASES IV AND V SUBUNIT 4	coord: 1..246
None	No IPR available	PANTHER	PTHR21297	DNA-DIRECTED RNA POLYMERASE II	coord: 1..246
IPR010997	HRDC-like superfamily	SUPERFAMILY	47819	HRDC-like	coord: 105..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019231.1	Sed0019231.1	mRNA
Sed0019231.2	Sed0019231.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030880	RNA polymerase complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000166	nucleotide binding