Sed0019088 (gene) Chayote v1

Overview


Name	Sed0019088
Type	gene
Organism	Sechium edule (Chayote v1)
Description	MENTAL domain containing protein
Location	LG07: 41171334 .. 41173159 (-)
RNA-Seq Expression	Sed0019088
Synteny	Sed0019088

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTGGAAGTTGGTTTGTTTATGTGTTCTTTGGTTTTTGCTGTCGGCCATGTCGTTGTGGCGTATAGGACCAGTTGTAGAGAAAGGAGGAAGCTCTTGGTTTACAAAATTGACATTGAAGCGGTAAGTATTTGATGTTTTGCCTCTCAAAACATTTTGACTTAATTTCATTCCTTATTCAATGCAACTGTCTTTTTCTTTTTGATTATCGGGAATGGAGGTTTCACCTCACTATATACTTGGGGGCTTAGATTCGAGAGACAACAATTTTTTTTATCATTAAGCTCACTCGTGAGTTTTGAATTTGAAACCTTGGGAATTATTTGATTCAGCTATCGTTCTGTGCCTATCTTTTAGCCGCGAGTTTGAAAATCTATATGCTCCATTAACTATTTGGTATAAACTCCAGGGTACTTTTGCAGTTTAACAGGAAAATGTCCAAATTACTCTTGAATTGTGAGCCCATCATTTTTTTGAGTTTAACAACAATTGGGATGGTAGATTCGAAAATATGAGCACAAACGTTAATCGAAGTTGAACTATGCACTACTTGGCAAGGATTTTAAAATTGTATTGTTTGTAGATATGAAAAGCCTAACTACTAGTTGTTGTGATAGGGTTTAAGCTAAAACAATAGCTCCATTCATCTCTGTCCAAGACTTTATCAACAAGAAATGAAATGCAATAACAACTTCTAAAGTTTCAATTTTCTGACGTGAAGGAAATATCTATATAAACTATGTCTTGTTCATTCAACTATAAGATATTCTGTCTGTTATTATTCCTGATTCCCTTTCCATTTCCTATGTTGGACATATTTTTTAGTCGAGAATTGATATGGAAAGTATCGACTCACACATATTTAAGAAGTCTGTGTGATTGGCAATTATAGTAGTCATTTAGCTGTAAGAGCACAAGCTATTTATCATATGGCACGTGCTTCTATGCCCACATTTTGGCATGTCAAAAGCCGAGGTTTGATAACTCAGTGACATTAGTGTACACCCAATAACTAAGAAGTCATGAGTTTGAATCTCACCCCAATTTGTTGTTACTCAAAAAAAAAAAAAAACAAGCTGAGGTTCCAAGGGAGAATATTACTCAACATTCGTTATCCTTCCCAATTAGTGACTAACTACTTTCCAAACTTCTCGGATGTCTCAAGAAATTCATTATTGTCAGTACAATGAGCTTCTCTGTCTAGTTTGGGTCCAGATGAGATGGCCTCTTTCGATGAGGTTTGAGATCTTTAAGGTATGCTTTTTTAGAGGTTCAGGGTTTGAAACCTACGAATAAATTTAATTGTAATTCCTTTGTTGTATTTCGGGTCGGGGTCTTGGGATGGACGCTGGTGATTTCGAATATGTAGTGAGGGGAGGAGTATAGATTGTTGAAAAATATCTGGACTTTACTGTCAATATTTAATGGAACATGATTACACATTTTTTAAACTACATCTCTAAAAGCCTTCTGGGAGTGAACTCTTCTGGTGTGAATAATTTTTTCAAACAAACATGATGATTTAGTGATTCAGTGGTCCTTAAGACTAGATAGTTATTATAGTTGGAGTGAAGGATTATGAGCTAATTCATTGATTATTATAAAAGGTAGTCTAAACACGGATTAAGTTATTATAACTCAACTTAATCCCCTCTAAACGGGTCCAAAACGTCCCTTAAGTTTTCTTACTCTAATGCAGACTTCTTCACTCCCTAGAAATCAATCAATAACCTTTTCTTATTTCTTCTTAACAGGTTTCAGCTTGCAATAGTGGTTTCTCCAAATACCAAAAGATTCTTCAAGAGGAAAGAGTGAAGAAGTAA

mRNA sequence

ATGGAATTGGAAGTTGGTTTGTTTATGTGTTCTTTGGTTTTTGCTGTCGGCCATGTCGTTGTGGCGTATAGGACCAGTTGTAGAGAAAGGAGGAAGCTCTTGGTTTACAAAATTGACATTGAAGCGGTTTCAGCTTGCAATAGTGGTTTCTCCAAATACCAAAAGATTCTTCAAGAGGAAAGAGTGAAGAAGTAA

Coding sequence (CDS)

ATGGAATTGGAAGTTGGTTTGTTTATGTGTTCTTTGGTTTTTGCTGTCGGCCATGTCGTTGTGGCGTATAGGACCAGTTGTAGAGAAAGGAGGAAGCTCTTGGTTTACAAAATTGACATTGAAGCGGTTTCAGCTTGCAATAGTGGTTTCTCCAAATACCAAAAGATTCTTCAAGAGGAAAGAGTGAAGAAGTAA

Protein sequence

MELEVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKILQEERVKK

Homology

[Close]

BLAST of Sed0019088 vs. NCBI nr
Match: XP_023518759.1 (uncharacterized protein LOC111782172 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 6.9e-21
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 3   LEVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKILQEERV 62
           +EV LFMCSL  AVGHV VAYRTSCRERRKLLVYKIDIEAVSACNSGF +YQKILQEERV
Sbjct: 143 MEVALFMCSLALAVGHVAVAYRTSCRERRKLLVYKIDIEAVSACNSGFPRYQKILQEERV 202

Query: 63  K 64
           K
Sbjct: 203 K 203

[Close]

BLAST of Sed0019088 vs. NCBI nr
Match: KAG6600002.1 (hypothetical protein SDJN03_05235, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.2 bits (274), Expect = 6.9e-21
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 3   LEVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKILQEERV 62
           +EV LFMCSL  AVGHV VAYRTSCRERRKLLVYKIDIEAVSACNSGF +YQKILQEERV
Sbjct: 143 MEVALFMCSLALAVGHVAVAYRTSCRERRKLLVYKIDIEAVSACNSGFPRYQKILQEERV 202

Query: 63  K 64
           K
Sbjct: 203 K 203

[Close]

BLAST of Sed0019088 vs. NCBI nr
Match: XP_022943170.1 (uncharacterized protein LOC111447983 [Cucurbita moschata])

HSP 1 Score: 110.2 bits (274), Expect = 6.9e-21
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 3   LEVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKILQEERV 62
           +EV LFMCSL  AVGHV VAYRTSCRERRKLLVYKIDIEAVSACNSGF +YQKILQEERV
Sbjct: 143 MEVALFMCSLALAVGHVAVAYRTSCRERRKLLVYKIDIEAVSACNSGFPRYQKILQEERV 202

Query: 63  K 64
           K
Sbjct: 203 K 203

[Close]

BLAST of Sed0019088 vs. NCBI nr
Match: XP_004149236.1 (uncharacterized protein LOC101213138 [Cucumis sativus] >KGN50651.1 hypothetical protein Csa_005895 [Cucumis sativus])

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 3   LEVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKILQEERV 62
           +EV LFMCSL  AVGHV VAYRTSCRERRKLLVYKIDIEAVSAC SGF +YQKILQEERV
Sbjct: 147 MEVALFMCSLALAVGHVAVAYRTSCRERRKLLVYKIDIEAVSACKSGFPRYQKILQEERV 206

Query: 63  K 64
           K
Sbjct: 207 K 207

[Close]

BLAST of Sed0019088 vs. NCBI nr
Match: XP_008463234.1 (PREDICTED: uncharacterized protein LOC103501438 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 3.4e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 3   LEVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKILQEERV 62
           +EV LFMCSL  AVGHV VAYRTSCRERRKLLVYKIDIEAVSAC SGF +YQKILQEERV
Sbjct: 147 MEVALFMCSLALAVGHVAVAYRTSCRERRKLLVYKIDIEAVSACKSGFPRYQKILQEERV 206

Query: 63  K 64
           K
Sbjct: 207 K 207

[Close]

BLAST of Sed0019088 vs. ExPASy TrEMBL
Match: A0A6J1FXH0 (uncharacterized protein LOC111447983 OS=Cucurbita moschata OX=3662 GN=LOC111447983 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-21
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 0


Query: 3   LEVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKILQEERV 62
           +EV LFMCSL  AVGHV VAYRTSCRERRKLLVYKIDIEAVSACNSGF +YQKILQEERV
Sbjct: 143 MEVALFMCSLALAVGHVAVAYRTSCRERRKLLVYKIDIEAVSACNSGFPRYQKILQEERV 202

Query: 63  K 64
           K
Sbjct: 203 K 203

[Close]

BLAST of Sed0019088 vs. ExPASy TrEMBL
Match: A0A0A0KSD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G202350 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 3   LEVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKILQEERV 62
           +EV LFMCSL  AVGHV VAYRTSCRERRKLLVYKIDIEAVSAC SGF +YQKILQEERV
Sbjct: 147 MEVALFMCSLALAVGHVAVAYRTSCRERRKLLVYKIDIEAVSACKSGFPRYQKILQEERV 206

Query: 63  K 64
           K
Sbjct: 207 K 207

[Close]

BLAST of Sed0019088 vs. ExPASy TrEMBL
Match: A0A1S3CKA8 (uncharacterized protein LOC103501438 OS=Cucumis melo OX=3656 GN=LOC103501438 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 3   LEVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKILQEERV 62
           +EV LFMCSL  AVGHV VAYRTSCRERRKLLVYKIDIEAVSAC SGF +YQKILQEERV
Sbjct: 147 MEVALFMCSLALAVGHVAVAYRTSCRERRKLLVYKIDIEAVSACKSGFPRYQKILQEERV 206

Query: 63  K 64
           K
Sbjct: 207 K 207

[Close]

BLAST of Sed0019088 vs. ExPASy TrEMBL
Match: A0A6J1K6Z9 (uncharacterized protein LOC111491742 OS=Cucurbita maxima OX=3661 GN=LOC111491742 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.8e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 3   LEVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKILQEERV 62
           +EV LFM SL  AVGHV VAYRTSCRERRKLLVYKIDIEAVSACNSGF +YQKILQEERV
Sbjct: 143 MEVALFMSSLALAVGHVAVAYRTSCRERRKLLVYKIDIEAVSACNSGFPRYQKILQEERV 202

Query: 63  K 64
           K
Sbjct: 203 K 203

[Close]

BLAST of Sed0019088 vs. ExPASy TrEMBL
Match: A0A6J1DRT8 (uncharacterized protein LOC111023719 OS=Momordica charantia OX=3673 GN=LOC111023719 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.8e-20
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 3   LEVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKILQEERV 62
           LEV LFMCSL  AVGHV VAYRTSCRERRKLLVYKIDIEAVSAC SGF +YQKILQ+ERV
Sbjct: 148 LEVALFMCSLGLAVGHVAVAYRTSCRERRKLLVYKIDIEAVSACKSGFPRYQKILQQERV 207

Query: 63  K 64
           K
Sbjct: 208 K 208

[Close]

BLAST of Sed0019088 vs. TAIR 10
Match: AT3G55880.2 (Alpha/beta hydrolase related protein )

HSP 1 Score: 95.1 bits (235), Expect = 2.1e-20
Identity = 43/60 (71.67%), Postives = 54/60 (90.00%), Query Frame = 0


Query: 4   EVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKILQEERVK 63
           E+ LF+CS + A+GH+VVAYRTSCRERRKLLV+KIDIE+VSAC + F +YQKILQ+ER+K
Sbjct: 156 EMALFLCSWILAIGHIVVAYRTSCRERRKLLVFKIDIESVSACKNVFPRYQKILQQERLK 215

[Close]

BLAST of Sed0019088 vs. TAIR 10
Match: AT2G40095.1 (Alpha/beta hydrolase related protein )

HSP 1 Score: 90.9 bits (224), Expect = 4.0e-19
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 4   EVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKI-LQEERV 63
           EV LF+CS V A+GH+VVAYRTSCRER+KLLV+KIDIEAVSAC + + +YQKI LQ+ER+
Sbjct: 149 EVALFLCSSVLAIGHIVVAYRTSCRERKKLLVFKIDIEAVSACKNVYPRYQKILLQQERL 208

[Close]

BLAST of Sed0019088 vs. TAIR 10
Match: AT1G80280.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 71.2 bits (173), Expect = 3.3e-13
Identity = 33/50 (66.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 7   LFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKI 57
           LF+ S+VFA+GH+VVAYRTSCR RRKLL +++D EAV +C S FS YQK+
Sbjct: 156 LFLSSVVFALGHMVVAYRTSCRARRKLLYHRVDPEAVLSCKSVFSGYQKV 205

[Close]

BLAST of Sed0019088 vs. TAIR 10
Match: AT3G55880.1 (Alpha/beta hydrolase related protein )

HSP 1 Score: 70.5 bits (171), Expect = 5.6e-13
Identity = 31/42 (73.81%), Postives = 39/42 (92.86%), Query Frame = 0


Query: 4   EVGLFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSA 46
           E+ LF+CS + A+GH+VVAYRTSCRERRKLLV+KIDIE+VS+
Sbjct: 156 EMALFLCSWILAIGHIVVAYRTSCRERRKLLVFKIDIESVSS 197

[Close]

BLAST of Sed0019088 vs. TAIR 10
Match: AT1G15490.1 (alpha/beta-Hydrolases superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 3.7e-12
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 0


Query: 7   LFMCSLVFAVGHVVVAYRTSCRERRKLLVYKIDIEAVSACNSGFSKYQKI 57
           LF+ S+VFA+GH VVAYRTSCR RRK+L +++D EAV +C S FS +QK+
Sbjct: 156 LFLSSVVFALGHTVVAYRTSCRARRKILYHRVDPEAVLSCKSIFSGHQKV 205

The following BLAST results are available for this feature:

BLAST of Sed0019088 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518759.1	6.9e-21	88.52	uncharacterized protein LOC111782172 [Cucurbita pepo subsp. pepo]	[more]
KAG6600002.1	6.9e-21	88.52	hypothetical protein SDJN03_05235, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022943170.1	6.9e-21	88.52	uncharacterized protein LOC111447983 [Cucurbita moschata]	[more]
XP_004149236.1	3.4e-20	86.89	uncharacterized protein LOC101213138 [Cucumis sativus] >KGN50651.1 hypothetical ...	[more]
XP_008463234.1	3.4e-20	86.89	PREDICTED: uncharacterized protein LOC103501438 [Cucumis melo]	[more]

BLAST of Sed0019088 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0019088 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXH0	3.3e-21	88.52	uncharacterized protein LOC111447983 OS=Cucurbita moschata OX=3662 GN=LOC1114479...	[more]
A0A0A0KSD8	1.7e-20	86.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G202350 PE=4 SV=1	[more]
A0A1S3CKA8	1.7e-20	86.89	uncharacterized protein LOC103501438 OS=Cucumis melo OX=3656 GN=LOC103501438 PE=...	[more]
A0A6J1K6Z9	4.8e-20	86.89	uncharacterized protein LOC111491742 OS=Cucurbita maxima OX=3661 GN=LOC111491742...	[more]
A0A6J1DRT8	4.8e-20	86.89	uncharacterized protein LOC111023719 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of Sed0019088 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55880.2	2.1e-20	71.67	Alpha/beta hydrolase related protein	[more]
AT2G40095.1	4.0e-19	72.13	Alpha/beta hydrolase related protein	[more]
AT1G80280.1	3.3e-13	66.00	alpha/beta-Hydrolases superfamily protein	[more]
AT3G55880.1	5.6e-13	73.81	Alpha/beta hydrolase related protein	[more]
AT1G15490.1	3.7e-12	62.00	alpha/beta-Hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34953:SF3	ALPHA/BETA HYDROLASE RELATED PROTEIN	coord: 4..63
None	No IPR available	PANTHER	PTHR34953	ALPHA/BETA HYDROLASE RELATED PROTEIN	coord: 4..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0019088.1	Sed0019088.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane