Sed0018787 (gene) Chayote v1

Overview


Name	Sed0018787
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Auxin-responsive family protein
Location	LG02: 52522049 .. 52522762 (+)
RNA-Seq Expression	Sed0018787
Synteny	Sed0018787

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAACCCTAATTCCCAAGTTGAAAATAATCAAATTAAACACAAACACACACAGCCATGGGCATTGTGAACGACTCTCCAAATCCGTCGTCGTTTTACACTCCCTCAGATCCTTGGCCGTTTCCTCTCTGAAAATTGGATTGTGTGGAATTAATTAATAATGGGTGGCGGAGAGAGACGACGGCAAGCGGCGGCGGCGGCGGGGGTGCCGAAAGGGTGTTTGGCGGTGAAGGTGGGGCAGAAAGGGGAGGAGCAGCACAGATTCGTGGTGCCGGTGATGTACTTCAATCACCCGCGGTTCATGCAACTCCTCAAAGAGGCCGAGGAGGAGTACGGTTTTGATCAGAAGGGGACCATCACCATTCCCTGCCACGTGGAGCAGTTTCGGCACGTGCAGGGCATGATTGACCGTGACAGTTCCTTCCACCACCGCCGTCACCACCACCACCACCTTGGTTGCTTCCGGGTTTCCTTCTAAATTCTAAATTCCCCCATCTAATACCAAAATTACACACCTTTTTTTCATGTAAATTTTCTCTTTTTTGTTTCTTAGGATAGGTCCTTTTGCAAATTTAGGGTGTAATCCTAACAAAACTTCAATAAATATTTACTTTGCCTTTCTTTCTTCTACAACCCATTGACAAATATTGGAACGTTTCTTATTTGGTCGGTCATATACTCTTTGTATTTTTAAATTATTTCTTCTTTTCTTCAC

mRNA sequence

CCAAACCCTAATTCCCAAGTTGAAAATAATCAAATTAAACACAAACACACACAGCCATGGGCATTGTGAACGACTCTCCAAATCCGTCGTCGTTTTACACTCCCTCAGATCCTTGGCCGTTTCCTCTCTGAAAATTGGATTGTGTGGAATTAATTAATAATGGGTGGCGGAGAGAGACGACGGCAAGCGGCGGCGGCGGCGGGGGTGCCGAAAGGGTGTTTGGCGGTGAAGGTGGGGCAGAAAGGGGAGGAGCAGCACAGATTCGTGGTGCCGGTGATGTACTTCAATCACCCGCGGTTCATGCAACTCCTCAAAGAGGCCGAGGAGGAGTACGGTTTTGATCAGAAGGGGACCATCACCATTCCCTGCCACGTGGAGCAGTTTCGGCACGTGCAGGGCATGATTGACCGTGACAGTTCCTTCCACCACCGCCGTCACCACCACCACCACCTTGGTTGCTTCCGGGTTTCCTTCTAAATTCTAAATTCCCCCATCTAATACCAAAATTACACACCTTTTTTTCATGTAAATTTTCTCTTTTTTGTTTCTTAGGATAGGTCCTTTTGCAAATTTAGGGTGTAATCCTAACAAAACTTCAATAAATATTTACTTTGCCTTTCTTTCTTCTACAACCCATTGACAAATATTGGAACGTTTCTTATTTGGTCGGTCATATACTCTTTGTATTTTTAAATTATTTCTTCTTTTCTTCAC

Coding sequence (CDS)

ATGGGTGGCGGAGAGAGACGACGGCAAGCGGCGGCGGCGGCGGGGGTGCCGAAAGGGTGTTTGGCGGTGAAGGTGGGGCAGAAAGGGGAGGAGCAGCACAGATTCGTGGTGCCGGTGATGTACTTCAATCACCCGCGGTTCATGCAACTCCTCAAAGAGGCCGAGGAGGAGTACGGTTTTGATCAGAAGGGGACCATCACCATTCCCTGCCACGTGGAGCAGTTTCGGCACGTGCAGGGCATGATTGACCGTGACAGTTCCTTCCACCACCGCCGTCACCACCACCACCACCTTGGTTGCTTCCGGGTTTCCTTCTAA

Protein sequence

MGGGERRRQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQFRHVQGMIDRDSSFHHRRHHHHHLGCFRVSF

Homology

[Close]

BLAST of Sed0018787 vs. NCBI nr
Match: XP_038900878.1 (auxin-responsive protein SAUR32-like [Benincasa hispida])

HSP 1 Score: 191.4 bits (485), Expect = 3.9e-45
Identity = 93/106 (87.74%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MGGGERRRQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGF 60
           MGGGERRRQ++AA  VPKGCLAV+VGQKGEEQ RFVVPVMYFNHPRFMQLLKEAEEEYGF
Sbjct: 1   MGGGERRRQSSAA--VPKGCLAVRVGQKGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGF 60

Query: 61  DQKGTITIPCHVEQFRHVQGMIDRDSSFHHR-RHHHHHLGCFRVSF 106
           DQKGTI IPCHVE+FRHVQGMIDR++SFH R  HHHHHLGCFRVSF
Sbjct: 61  DQKGTIAIPCHVEEFRHVQGMIDRENSFHRRHHHHHHHLGCFRVSF 104

[Close]

BLAST of Sed0018787 vs. NCBI nr
Match: XP_022924405.1 (auxin-responsive protein SAUR32-like [Cucurbita moschata] >KAG6582694.1 Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019092.1 Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.9 bits (481), Expect = 1.1e-44
Identity = 92/105 (87.62%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MGGGERRRQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGF 60
           MGGGERRRQ  + AGVPKGCLAV+VGQK EEQ RFVVPVMYFNHPRFMQLLKEAEEEYGF
Sbjct: 1   MGGGERRRQ-HSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGF 60

Query: 61  DQKGTITIPCHVEQFRHVQGMIDRDSSFHHRRHHHHHLGCFRVSF 106
           DQKGTI IPCHVE+FRHVQGMIDR++SF HRRHHHHH+GCFRVSF
Sbjct: 61  DQKGTIAIPCHVEEFRHVQGMIDRENSF-HRRHHHHHVGCFRVSF 103

[Close]

BLAST of Sed0018787 vs. NCBI nr
Match: XP_023526937.1 (auxin-responsive protein SAUR32-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.5 bits (480), Expect = 1.5e-44
Identity = 91/108 (84.26%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 1   MGGGERRRQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGF 60
           M GGERRRQ +AAA VPKGCLAV+VGQK EEQ RFVVPVMYFNHPRFMQLLKEAEEEYGF
Sbjct: 1   MPGGERRRQHSAAAAVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGF 60

Query: 61  DQKGTITIPCHVEQFRHVQGMIDRDSSF---HHRRHHHHHLGCFRVSF 106
           DQKGTI IPCHVE+FRHVQGMIDR++SF   HH  HHHHH+GCFRVSF
Sbjct: 61  DQKGTIAIPCHVEEFRHVQGMIDRENSFHRRHHHHHHHHHVGCFRVSF 108

[Close]

BLAST of Sed0018787 vs. NCBI nr
Match: XP_004133791.1 (auxin-responsive protein SAUR32 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 2.5e-44
Identity = 93/113 (82.30%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MGGGERRRQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGF 60
           MGGGERRRQ++A   VPKGCLAVKVGQKGEEQ RFVVPVMYFNHPRFMQLLKEAEEEYGF
Sbjct: 1   MGGGERRRQSSAT--VPKGCLAVKVGQKGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGF 60

Query: 61  DQKGTITIPCHVEQFRHVQGMIDRDSSFHHR--------RHHHHHLGCFRVSF 106
           DQKGTI IPCHVE+FRHVQGMIDR++SFH R        +HHHHHLGCFRVSF
Sbjct: 61  DQKGTIAIPCHVEEFRHVQGMIDRENSFHRRHNHHHHQQQHHHHHLGCFRVSF 111

[Close]

BLAST of Sed0018787 vs. NCBI nr
Match: KAA0048857.1 (auxin-responsive family protein [Cucumis melo var. makuwa] >TYK20809.1 auxin-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 188.3 bits (477), Expect = 3.3e-44
Identity = 93/110 (84.55%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MGGGERRRQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGF 60
           MGGGERRRQ+ AA  VPKGCLAVKVGQKGEEQ RFVVPVMYFNHPRFMQLLKEAEEEYGF
Sbjct: 1   MGGGERRRQSGAA--VPKGCLAVKVGQKGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGF 60

Query: 61  DQKGTITIPCHVEQFRHVQGMIDRDSSF-----HHRRHHHHHLGCFRVSF 106
           DQKGTI IPCHVE+FRHVQGMIDR++SF     HH  HH HHLGCFRVSF
Sbjct: 61  DQKGTIAIPCHVEEFRHVQGMIDRENSFHRRHNHHHHHHSHHLGCFRVSF 108

[Close]

BLAST of Sed0018787 vs. ExPASy Swiss-Prot
Match: Q9ZUZ3 (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.7e-33
Identity = 73/120 (60.83%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 1   MGGGER--------RRQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLK 60
           MG GE+        R+Q+     VPKGCLA+KVG +GEEQ RF+VPV+YFNHP FMQLLK
Sbjct: 1   MGTGEKTLKSFQLHRKQSVKVKDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLK 60

Query: 61  EAEEEYGFDQKGTITIPCHVEQFRHVQGMIDRDSSF-----HHRRH-----HHHHLGCFR 103
           EAE+EYGFDQKGTITIPCHVE+FR+VQ +ID + S      HH RH     +HH +GCFR
Sbjct: 61  EAEDEYGFDQKGTITIPCHVEEFRYVQALIDGERSVYNGNNHHHRHGGRDQYHHLVGCFR 120

[Close]

BLAST of Sed0018787 vs. ExPASy Swiss-Prot
Match: O22150 (Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-15
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 0


Query: 16  VPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQF 75
           VP+G LA+ VGQK  + HR +VP++YFNHP F +LL+EAE+EYGF  +G ITIPC    F
Sbjct: 79  VPRGHLAIYVGQKDGDCHRVLVPIVYFNHPLFGELLREAEKEYGFCHEGGITIPCLYSDF 138

Query: 76  RHVQGMIDRDSS 88
             V+  I   SS
Sbjct: 139 ERVKTRIASGSS 150

[Close]

BLAST of Sed0018787 vs. ExPASy Swiss-Prot
Match: P33081 (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-11
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 0


Query: 8  RQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGFDQ-KGTI 67
          R+A+ AA  PKG LAV VG+K     RFV+PV Y N P F  LL +AEEE+G+D   G +
Sbjct: 9  RKASKAADAPKGYLAVYVGEK---LKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGL 68

Query: 68 TIPCHVEQFRHVQGMID 84
          TIPC  + F+ +   ++
Sbjct: 69 TIPCSEDVFQCITSCLN 82

[Close]

BLAST of Sed0018787 vs. ExPASy Swiss-Prot
Match: Q41220 (Auxin-responsive protein SAUR15 OS=Arabidopsis thaliana OX=3702 GN=SAUR15 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-11
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 0


Query: 13 AAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGFDQ-KGTITIPCH 72
          ++  P+G +AV VG+  +++ R+VVPV Y N P F QLL ++EEE+G+D   G +TIPCH
Sbjct: 18 SSSTPRGFMAVYVGENDQKKKRYVVPVSYLNQPLFQQLLSKSEEEFGYDHPMGGLTIPCH 77

Query: 73 VEQFRHVQGMI 83
             F  V   I
Sbjct: 78 ESLFFTVTSQI 88

[Close]

BLAST of Sed0018787 vs. ExPASy Swiss-Prot
Match: P33082 (Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.5e-11
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 8  RQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGFDQ-KGTI 67
          R+A+ A   PKG LAV VG+K     RFV+PV Y N P F  LL +AEEE+G+D   G +
Sbjct: 9  RKASNAVDAPKGYLAVYVGEK---MKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGL 68

Query: 68 TIPCHVEQFRHV 79
          TIPC  E F+ +
Sbjct: 69 TIPCSEEVFQRI 77

[Close]

BLAST of Sed0018787 vs. ExPASy TrEMBL
Match: A0A6J1EEX5 (auxin-responsive protein SAUR32-like OS=Cucurbita moschata OX=3662 GN=LOC111431915 PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.4e-45
Identity = 92/105 (87.62%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MGGGERRRQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGF 60
           MGGGERRRQ  + AGVPKGCLAV+VGQK EEQ RFVVPVMYFNHPRFMQLLKEAEEEYGF
Sbjct: 1   MGGGERRRQ-HSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGF 60

Query: 61  DQKGTITIPCHVEQFRHVQGMIDRDSSFHHRRHHHHHLGCFRVSF 106
           DQKGTI IPCHVE+FRHVQGMIDR++SF HRRHHHHH+GCFRVSF
Sbjct: 61  DQKGTIAIPCHVEEFRHVQGMIDRENSF-HRRHHHHHVGCFRVSF 103

[Close]

BLAST of Sed0018787 vs. ExPASy TrEMBL
Match: A0A0A0L5S7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118740 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.2e-44
Identity = 93/113 (82.30%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MGGGERRRQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGF 60
           MGGGERRRQ++A   VPKGCLAVKVGQKGEEQ RFVVPVMYFNHPRFMQLLKEAEEEYGF
Sbjct: 1   MGGGERRRQSSAT--VPKGCLAVKVGQKGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGF 60

Query: 61  DQKGTITIPCHVEQFRHVQGMIDRDSSFHHR--------RHHHHHLGCFRVSF 106
           DQKGTI IPCHVE+FRHVQGMIDR++SFH R        +HHHHHLGCFRVSF
Sbjct: 61  DQKGTIAIPCHVEEFRHVQGMIDRENSFHRRHNHHHHQQQHHHHHLGCFRVSF 111

[Close]

BLAST of Sed0018787 vs. ExPASy TrEMBL
Match: A0A5D3DBZ9 (Auxin-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00700 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.6e-44
Identity = 93/110 (84.55%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MGGGERRRQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGF 60
           MGGGERRRQ+ AA  VPKGCLAVKVGQKGEEQ RFVVPVMYFNHPRFMQLLKEAEEEYGF
Sbjct: 1   MGGGERRRQSGAA--VPKGCLAVKVGQKGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGF 60

Query: 61  DQKGTITIPCHVEQFRHVQGMIDRDSSF-----HHRRHHHHHLGCFRVSF 106
           DQKGTI IPCHVE+FRHVQGMIDR++SF     HH  HH HHLGCFRVSF
Sbjct: 61  DQKGTIAIPCHVEEFRHVQGMIDRENSFHRRHNHHHHHHSHHLGCFRVSF 108

[Close]

BLAST of Sed0018787 vs. ExPASy TrEMBL
Match: A0A6J1IWQ0 (auxin-responsive protein SAUR32-like OS=Cucurbita maxima OX=3661 GN=LOC111479275 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.0e-43
Identity = 88/105 (83.81%), Postives = 95/105 (90.48%), Query Frame = 0


Query: 1   MGGGERRRQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGF 60
           M GG+RRR  + AA VPKGCLAV+VGQK EEQ RFVVPVMYFNHPRFMQLLKEAEEEYGF
Sbjct: 1   MPGGDRRRLHSGAA-VPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGF 60

Query: 61  DQKGTITIPCHVEQFRHVQGMIDRDSSFHHRRHHHHHLGCFRVSF 106
           DQKGTI IPCHVE+FRHVQGMIDR++SFH R HHHHH+GCFRVSF
Sbjct: 61  DQKGTIAIPCHVEEFRHVQGMIDRENSFHRRHHHHHHVGCFRVSF 104

[Close]

BLAST of Sed0018787 vs. ExPASy TrEMBL
Match: A0A6J1D068 (auxin-responsive protein SAUR32-like OS=Momordica charantia OX=3673 GN=LOC111016369 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.9e-43
Identity = 88/104 (84.62%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 2   GGGERRRQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGFD 61
           GGG  +RQ +A A VPKGCLAVKVG +GEEQ RFVVPVMYFNHPRFMQLLKEAEEEYGFD
Sbjct: 14  GGGHGKRQGSATAAVPKGCLAVKVGHQGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFD 73

Query: 62  QKGTITIPCHVEQFRHVQGMIDRDSSFHHRRHHHHHLGCFRVSF 106
           QKGTITIPCHVEQFRHVQ MIDR++SF  RRHHHHH+GCFRVSF
Sbjct: 74  QKGTITIPCHVEQFRHVQCMIDRENSF--RRHHHHHVGCFRVSF 115

[Close]

BLAST of Sed0018787 vs. TAIR 10
Match: AT2G46690.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 142.5 bits (358), Expect = 1.9e-34
Identity = 73/120 (60.83%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 1   MGGGER--------RRQAAAAAGVPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLK 60
           MG GE+        R+Q+     VPKGCLA+KVG +GEEQ RF+VPV+YFNHP FMQLLK
Sbjct: 1   MGTGEKTLKSFQLHRKQSVKVKDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLK 60

Query: 61  EAEEEYGFDQKGTITIPCHVEQFRHVQGMIDRDSSF-----HHRRH-----HHHHLGCFR 103
           EAE+EYGFDQKGTITIPCHVE+FR+VQ +ID + S      HH RH     +HH +GCFR
Sbjct: 61  EAEDEYGFDQKGTITIPCHVEEFRYVQALIDGERSVYNGNNHHHRHGGRDQYHHLVGCFR 120

[Close]

BLAST of Sed0018787 vs. TAIR 10
Match: AT4G00880.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 137.9 bits (346), Expect = 4.7e-33
Identity = 68/96 (70.83%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 16  VPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQF 75
           VPKGCLAVKVGQ GEEQ RFV+PVMYFNHP F QLLKEAEEE+GF QKGTITIPCHVE+F
Sbjct: 28  VPKGCLAVKVGQ-GEEQERFVIPVMYFNHPLFGQLLKEAEEEFGFAQKGTITIPCHVEEF 87

Query: 76  RHVQGMIDRDSS--------FHHRRHHHHHLGCFRV 104
           R+VQG+IDR+++         HH  HH+H + CFRV
Sbjct: 88  RYVQGLIDRENTRFLGTNLLDHHHHHHNHLIRCFRV 122

[Close]

BLAST of Sed0018787 vs. TAIR 10
Match: AT3G61900.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 122.1 bits (305), Expect = 2.7e-28
Identity = 59/85 (69.41%), Postives = 66/85 (77.65%), Query Frame = 0


Query: 16  VPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQF 75
           VPKGCLA+KVG K EE+ RFVVPV YFNHP FMQLL+EAEEEYGF+QKGTITIPCHVE F
Sbjct: 30  VPKGCLAIKVGSKEEEKQRFVVPVFYFNHPLFMQLLREAEEEYGFEQKGTITIPCHVEVF 89

Query: 76  RHVQGMIDRDSSFHHRRHHHHHLGC 101
           R+VQ MI+R+ S           GC
Sbjct: 90  RYVQDMINRERSLDDDDDASKQTGC 114

[Close]

BLAST of Sed0018787 vs. TAIR 10
Match: AT5G53590.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 100.9 bits (250), Expect = 6.4e-22
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 0


Query: 16  VPKGCLAVKVGQKGEEQ--HRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVE 75
           VPKGC+A+ VG + +E+  HRFVVP+++ +HP F+ LLKEAE+EYGF   G ITIPC V+
Sbjct: 46  VPKGCVAIMVGHEDDEEGLHRFVVPLVFLSHPLFLDLLKEAEKEYGFKHDGPITIPCGVD 105

Query: 76  QFRHVQGMIDRDSSFHH---------RRHHHHHLGCF 102
           +F+HVQ +ID ++   H           HH++HL CF
Sbjct: 106 EFKHVQEVIDEETHRRHSHGGHGHNNHNHHNNHLRCF 142

[Close]

BLAST of Sed0018787 vs. TAIR 10
Match: AT3G60690.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 84.7 bits (208), Expect = 4.7e-17
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 16  VPKGCLAVKVGQKGEEQHRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTITIPCHVEQF 75
           VPKG  AV +G+K  +  R +VP++YFNHP F +LL+EAEEE+GF Q+G ITIPC    F
Sbjct: 88  VPKGHSAVYIGKKDGDFQRVLVPIVYFNHPLFGELLREAEEEFGFSQEGGITIPCPYSDF 147

Query: 76  RHVQGMIDRDSSF 89
           + VQ  I+  S F
Sbjct: 148 KRVQTRIESGSGF 160

The following BLAST results are available for this feature:

BLAST of Sed0018787 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900878.1	3.9e-45	87.74	auxin-responsive protein SAUR32-like [Benincasa hispida]	[more]
XP_022924405.1	1.1e-44	87.62	auxin-responsive protein SAUR32-like [Cucurbita moschata] >KAG6582694.1 Auxin-re...	[more]
XP_023526937.1	1.5e-44	84.26	auxin-responsive protein SAUR32-like [Cucurbita pepo subsp. pepo]	[more]
XP_004133791.1	2.5e-44	82.30	auxin-responsive protein SAUR32 [Cucumis sativus]	[more]
KAA0048857.1	3.3e-44	84.55	auxin-responsive family protein [Cucumis melo var. makuwa] >TYK20809.1 auxin-res...	[more]

BLAST of Sed0018787 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUZ3	2.7e-33	60.83	Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 S...	[more]
O22150	2.5e-15	54.17	Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 S...	[more]
P33081	4.9e-11	46.75	Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q41220	4.9e-11	45.07	Auxin-responsive protein SAUR15 OS=Arabidopsis thaliana OX=3702 GN=SAUR15 PE=1 S...	[more]
P33082	6.5e-11	50.00	Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of Sed0018787 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEX5	5.4e-45	87.62	auxin-responsive protein SAUR32-like OS=Cucurbita moschata OX=3662 GN=LOC1114319...	[more]
A0A0A0L5S7	1.2e-44	82.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118740 PE=3 SV=1	[more]
A0A5D3DBZ9	1.6e-44	84.55	Auxin-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1IWQ0	3.0e-43	83.81	auxin-responsive protein SAUR32-like OS=Cucurbita maxima OX=3661 GN=LOC111479275...	[more]
A0A6J1D068	3.9e-43	84.62	auxin-responsive protein SAUR32-like OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of Sed0018787 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46690.1	1.9e-34	60.83	SAUR-like auxin-responsive protein family	[more]
AT4G00880.1	4.7e-33	70.83	SAUR-like auxin-responsive protein family	[more]
AT3G61900.1	2.7e-28	69.41	SAUR-like auxin-responsive protein family	[more]
AT5G53590.1	6.4e-22	49.48	SAUR-like auxin-responsive protein family	[more]
AT3G60690.1	4.7e-17	53.42	SAUR-like auxin-responsive protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 10..81 e-value: 7.5E-23 score: 80.5
None	No IPR available	PANTHER	PTHR31374	AUXIN-INDUCED PROTEIN-LIKE-RELATED	coord: 12..99
None	No IPR available	PANTHER	PTHR31374:SF276	SMALL AUXIN-UP RNA-RELATED	coord: 12..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018787.1	Sed0018787.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009733	response to auxin