Sed0018759 (gene) Chayote v1

Overview


Name	Sed0018759
Type	gene
Organism	Sechium edule (Chayote v1)
Description	cysteine-rich and transmembrane domain-containing protein B-like
Location	LG08: 1894506 .. 1896050 (+)
RNA-Seq Expression	Sed0018759
Synteny	Sed0018759

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGCCTCGTTCCTTCATTTGACTTCACACATATTCCCCTTGAGGCAGTTGAGCAGTATTAAAAATGTTTTTTGTTGTTATGCAGTTGGAGTTATAATTTTGGTGGTCTCTTGCTGTGCTGTGATGCAGGTTACCTAATTTTAAGACTAAACTACCTATTTTATTTCCCCACAAACAACTGCTAACATTGTATTCTTATGGCAGTAGGTGTAGAAATTTGTGTAAGTTTACAATCAAAAGCAACCACTCCACAATCTACCATATTTTTTATATGCAAAATTGAACAACTTGAATCTTCACCCTGTTTTATACCTTGCCTAATTCAATGGACATTCCAACCAAAAACAGAGTCAAGGAATTCAACAACATGAAACAAAATTTTCAGAACCAGCCTCAAGGTCATCCTTCTTTATTTTATTTCTTCATATCAATAATTTTTCTTTGGTTGTAGATGCTTTTGCAAGAAATGATGCTCAATAGAATGGAAAGTCTGTCCCCAAGGGGTGGCACAGTGGTTGAAGACTTGGGCTTTGAGGGTATGCTCCCCTCAAAGTCCCATGTTCGAGACTCAGCTGTGACATCTCGGTGCCTGGCCTAGGGACGGGCATGGTTACCCTTGTTTCAAAAAAAAAAATGGAAAGTCTCCTAAAGTAAAGAATTATGCATGCCAGAAGATTTTGATTTTCATACAAGCAATTAGTGACTTTTCAATTTTTTTTTTCTAGGAAAAAAGGAAAATGAGAGATTATAAATTATTGTAGGAAAGTTTGTTCTGAATTTATTGTCTGTAGCATAATTTTATAGATACTGGACCAGGTCCTTACCCAGTTGCCCCACCTATGTATGATCAAATGCAACATGGTCAGTCTCAGCCATACTCTACAACTGTACCTCCTCAAGGAGAAACCAAGTTTCAAATTGTACCTCCTCCAAGGGAAACCAAGTCTAGGGGTGATGGGTTTTGCAGAGGATTGTAAGTTCCCTTTCTCTCTCTACTTAACACCTCTCCCTCGGGATTCTATCTCAAAATCAATTGGTAATGAATGAAGTAACTCATCTATCTTATAAATGCCACGAGGTCTCCTCACCTTTCCAAGGTGGGATCCTCAACATGTCTTCTCCAAATGGCAGATGGAGCCATAATACTAGGACCAGATCCCAATTTAATTTTTATTAGATCGAATATTTGTTTGGATTTAATGAACTTTGATATCATATTAGAATACATGAGGTTTCATTTTGAATCCAATTATGAATGAGTGGAATAACTCATCTATCTTATCGACGATAGGAGGTCTCCTCATCTTTTCAAGGCGAGATCCTCAATACCCCCACACGCGCGATGCGTGCACACACAAAATTATGCTATGGTTTGAATTTTCTATGTTTTCAAACAGTTGTGCTGGCTTGTGTTGCTGCTGCTGCCTAGATATCTGCTTCTAGAGATGGACTGATGGAGGATCCTTGCAATTACCTCTTCTCCCCTTAACTTCTAGTTTGAAATTGACACAAGTAATCTACTGGGTTTCCATGAACATGTAG

mRNA sequence

ATGTTCGCCTCGTTCCTTCATTTGACTTCACACATATTCCCCTTGAGGCAGTTGAGCAGTATTAAAAATGTTTTTTGTTGTTATGCAGTTGGAGTTATAATTTTGGTGGTCTCTTGCTATACTGGACCAGGTCCTTACCCAGTTGCCCCACCTATGTATGATCAAATGCAACATGGTCAGTCTCAGCCATACTCTACAACTGTACCTCCTCAAGGAGAAACCAAGTTTCAAATTGTACCTCCTCCAAGGGAAACCAAGTCTAGGGGTGATGGGTTTTGCAGAGGATTTTTGAAATTGACACAAGTAATCTACTGGGTTTCCATGAACATGTAG

Coding sequence (CDS)

ATGTTCGCCTCGTTCCTTCATTTGACTTCACACATATTCCCCTTGAGGCAGTTGAGCAGTATTAAAAATGTTTTTTGTTGTTATGCAGTTGGAGTTATAATTTTGGTGGTCTCTTGCTATACTGGACCAGGTCCTTACCCAGTTGCCCCACCTATGTATGATCAAATGCAACATGGTCAGTCTCAGCCATACTCTACAACTGTACCTCCTCAAGGAGAAACCAAGTTTCAAATTGTACCTCCTCCAAGGGAAACCAAGTCTAGGGGTGATGGGTTTTGCAGAGGATTTTTGAAATTGACACAAGTAATCTACTGGGTTTCCATGAACATGTAG

Protein sequence

MFASFLHLTSHIFPLRQLSSIKNVFCCYAVGVIILVVSCYTGPGPYPVAPPMYDQMQHGQSQPYSTTVPPQGETKFQIVPPPRETKSRGDGFCRGFLKLTQVIYWVSMNM

Homology

[Close]

BLAST of Sed0018759 vs. NCBI nr
Match: KAG7021578.1 (hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 55/97 (56.70%), Postives = 62/97 (63.92%), Query Frame = 0


Query: 41  TGPGPYPVAPPMYDQMQHGQSQPYSTTVPPQGETKFQIVPPPRETKSRGDGFCRGFL--- 100
           TGPGPYPVAPPM D MQHGQSQPYS+ +PPQGETKFQ V PPRET S+GDGFCRG L   
Sbjct: 12  TGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGLLVLL 71

Query: 101 ------------------------KLTQVIYWVSMNM 111
                                   +LTQVI+WV ++M
Sbjct: 72  LLPRYLLLGMEDPCKCHFAPALLVRLTQVIFWVPISM 108

[Close]

BLAST of Sed0018759 vs. NCBI nr
Match: XP_022969088.1 (cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxima])

HSP 1 Score: 103.2 bits (256), Expect = 1.4e-18
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 41 TGPGPYPVAPPMYDQMQHGQSQPYSTTVPPQGETKFQIVPPPRETKSRGDGFCRG 96
          TGPGPYPVAPPM D MQHGQSQPYS+ +PPQGETK QIV PPRET S+GDGFCRG
Sbjct: 12 TGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRG 66

[Close]

BLAST of Sed0018759 vs. NCBI nr
Match: KAE8652444.1 (hypothetical protein Csa_013973 [Cucumis sativus])

HSP 1 Score: 90.9 bits (224), Expect = 7.4e-15
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 41  TGPGPYPVAPPMYDQMQHGQSQPYSTTVPPQGETKFQIVPPPRETKSRGDGFCRG 96
           TGPGPY VAPPM D MQHGQ+QPY   VPPQGETK + VPP  +TK RGDGFCRG
Sbjct: 70  TGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRG 124

[Close]

BLAST of Sed0018759 vs. NCBI nr
Match: KAA0058026.1 (hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 8.2e-14
Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 41  TGPGPYPVAPPMYDQMQHGQSQPYSTTVPPQGETKFQIVPPPRETKSRGDGFCRGFLKL 100
           TGPGPY V PP  D MQHGQ+QPY   VPPQGETK + VPP  +TK RGDGFCRG   L
Sbjct: 22  TGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGLYLL 80

[Close]

BLAST of Sed0018759 vs. NCBI nr
Match: KAG6587617.1 (hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.5 bits (210), Expect = 3.1e-13
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 52  MYDQMQHGQSQPYSTTVPPQGETKFQIVPPPRETKSRGDGFCRGFL-------------- 111
           M D MQHGQSQPYS+ +PPQGETKFQ V PPRET S+GDGFCRG L              
Sbjct: 1   MCDPMQHGQSQPYSSIIPPQGETKFQNVAPPRETMSKGDGFCRGLLVLLLLPRYLLLGME 60

[Close]

BLAST of Sed0018759 vs. ExPASy TrEMBL
Match: A0A6J1HZZ2 (cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111468187 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.0e-19
Identity = 46/55 (83.64%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 41 TGPGPYPVAPPMYDQMQHGQSQPYSTTVPPQGETKFQIVPPPRETKSRGDGFCRG 96
          TGPGPYPVAPPM D MQHGQSQPYS+ +PPQGETK QIV PPRET S+GDGFCRG
Sbjct: 12 TGPGPYPVAPPMCDPMQHGQSQPYSSIIPPQGETKSQIVTPPRETMSKGDGFCRG 66

[Close]

BLAST of Sed0018759 vs. ExPASy TrEMBL
Match: A0A0A0LPD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.6e-15
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 41  TGPGPYPVAPPMYDQMQHGQSQPYSTTVPPQGETKFQIVPPPRETKSRGDGFCRG 96
           TGPGPY VAPPM D MQHGQ+QPY   VPPQGETK + VPP  +TK RGDGFCRG
Sbjct: 68  TGPGPYQVAPPMCDPMQHGQTQPYPPIVPPQGETKSETVPPSMKTKFRGDGFCRG 122

[Close]

BLAST of Sed0018759 vs. ExPASy TrEMBL
Match: A0A5A7UV38 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G003310 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.0e-14
Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 0


Query: 41  TGPGPYPVAPPMYDQMQHGQSQPYSTTVPPQGETKFQIVPPPRETKSRGDGFCRGFLKL 100
           TGPGPY V PP  D MQHGQ+QPY   VPPQGETK + VPP  +TK RGDGFCRG   L
Sbjct: 22  TGPGPYQVGPPKCDPMQHGQTQPYPPIVPPQGETKSKTVPPSMKTKFRGDGFCRGLYLL 80

The following BLAST results are available for this feature:

BLAST of Sed0018759 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021578.1	1.5e-20	56.70	hypothetical protein SDJN02_15304 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022969088.1	1.4e-18	83.64	cysteine-rich and transmembrane domain-containing protein B-like [Cucurbita maxi...	[more]
KAE8652444.1	7.4e-15	74.55	hypothetical protein Csa_013973 [Cucumis sativus]	[more]
KAA0058026.1	8.2e-14	67.80	hypothetical protein E6C27_scaffold274G003310 [Cucumis melo var. makuwa]	[more]
KAG6587617.1	3.1e-13	51.16	hypothetical protein SDJN03_16182, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0018759 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0018759 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HZZ2	7.0e-19	83.64	cysteine-rich and transmembrane domain-containing protein B-like OS=Cucurbita ma...	[more]
A0A0A0LPD8	3.6e-15	74.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G014520 PE=4 SV=1	[more]
A0A5A7UV38	4.0e-14	67.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Sed0018759 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018759.1	Sed0018759.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane