Sed0018684 (gene) Chayote v1

Overview


Name	Sed0018684
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pentatricopeptide repeat-containing protein
Location	LG04: 38055415 .. 38056830 (-)
RNA-Seq Expression	Sed0018684
Synteny	Sed0018684

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCTACAGCATCCAAATGCAGACCCATAAGCCAATTTCTCCCTTTCGCCTGTGTTCACTTCTTCGTCTCCAAAAGGACCCTAAACTCGCCCTTCAACTCTTCCACAACCCTAACCCTAACCATAACCCCAACCCCATCTCTTCAAAACCCCCCAAACCCTTCCGCTACTCTTTACTTTCCTATGATCTCATCATCACCAAGCTCGGCCGGGCCAAAATGTTCGATGAAATGGAACAAATCCTCCACCAGCTCAACCAAGAGACTCGTTTTTTTCAACACGAGATTATTTTATGCAATGTCATTTCGTTCTATGGCCGAGCTCGCCTCCCCGGTCGTGCCCGCCAAGTGTTCGACCAAATTCCGTCTTTCCGCTGCAAGCGGACGGTGAAATCGGCGAATTCGTTGTTGGATGCATTGTTGAAGTGCAGGGAATTTGATAAAATGGTGGAAGTTTTTGTGGGCATTGGTAAATATGCCTCCCCTGATGCTTGCACTTTTAATATTTTGATTCATGCTGCTTGTCTGCGTGGTAATTTGGATGCTGCATGGGATGTGTTTGATGAAATGCCAAAGAGAGGTGTGAACCCGAATGTGGTTACTTTTGGAACTTTGATTTATGGGCTTTGTTTGAATTCTAAGTTGAAAGAAGCATTGAAGTTGAAAGAGGATATGGTGAGAGAATATAGGATTCTGCCTAATGCGTCAATATACGCTAGTTTGATCAAAGGGTTCTGTGGGATTGGAGAATTGAACTTGTCTTTCAAGCTAAAGAAGGAAATGGTGACTAACAATGTAAAATTGGACTCGGCAATCTATTCTACTTTAATCAGCGCACTCTTCAAGCATGGTAGGAAAGATGAAGTGTCTGACATTTTTGTAGAAATGGGAGATAATGGGTGCAAACCTGATACTGTCACCTACAATGCCATGATCAATGGGCATTGTAAAGAAAATGATTTCGAATCTGCGTATAGAGTTTTGGATGAGATGGTGGAGAATGGGTGTAAACCAGATGTGATCAGTTTCAATACGATCATTGGAAGATTGTGCAAGGAGAGGAAATGGGATAAGGCTATGGACTTGCTTGAAGATATGCCAAGACGAGGGTGTTTTCCTGATGTGGTATCCTACAGGACACTTTTTGATGGGCTATGTGAAATGATGCAGTTACAGGAAGCAACTTCCATATTGGATGAGATGATTTTCAAAGGCTATGTGCCTCGATCTGAAAGCATAAACAAACTCGTCGATGTGTTGTGCCAGGAACGCTATATGGAGCAGTTGTGGATGGTTTTGAAGTGTCTAGGAAGAGAAAATGCCATGAATTTTGATATATGGGCTAGAGTTGTTGCTTTTGTTTGCAAGGAGAAGCCATCAGAAGCCTCCAAGTTAATTCATTCATTGATTAGTTAA

mRNA sequence

AAAACCTACAGCATCCAAATGCAGACCCATAAGCCAATTTCTCCCTTTCGCCTGTGTTCACTTCTTCGTCTCCAAAAGGACCCTAAACTCGCCCTTCAACTCTTCCACAACCCTAACCCTAACCATAACCCCAACCCCATCTCTTCAAAACCCCCCAAACCCTTCCGCTACTCTTTACTTTCCTATGATCTCATCATCACCAAGCTCGGCCGGGCCAAAATGTTCGATGAAATGGAACAAATCCTCCACCAGCTCAACCAAGAGACTCGTTTTTTTCAACACGAGATTATTTTATGCAATGTCATTTCGTTCTATGGCCGAGCTCGCCTCCCCGGTCGTGCCCGCCAAGTGTTCGACCAAATTCCGTCTTTCCGCTGCAAGCGGACGGTGAAATCGGCGAATTCGTTGTTGGATGCATTGTTGAAGTGCAGGGAATTTGATAAAATGGTGGAAGTTTTTGTGGGCATTGGTAAATATGCCTCCCCTGATGCTTGCACTTTTAATATTTTGATTCATGCTGCTTGTCTGCGTGGTAATTTGGATGCTGCATGGGATGTGTTTGATGAAATGCCAAAGAGAGGTGTGAACCCGAATGTGGTTACTTTTGGAACTTTGATTTATGGGCTTTGTTTGAATTCTAAGTTGAAAGAAGCATTGAAGTTGAAAGAGGATATGGTGAGAGAATATAGGATTCTGCCTAATGCGTCAATATACGCTAGTTTGATCAAAGGGTTCTGTGGGATTGGAGAATTGAACTTGTCTTTCAAGCTAAAGAAGGAAATGGTGACTAACAATGTAAAATTGGACTCGGCAATCTATTCTACTTTAATCAGCGCACTCTTCAAGCATGGTAGGAAAGATGAAGTGTCTGACATTTTTGTAGAAATGGGAGATAATGGGTGCAAACCTGATACTGTCACCTACAATGCCATGATCAATGGGCATTGTAAAGAAAATGATTTCGAATCTGCGTATAGAGTTTTGGATGAGATGGTGGAGAATGGGTGTAAACCAGATGTGATCAGTTTCAATACGATCATTGGAAGATTGTGCAAGGAGAGGAAATGGGATAAGGCTATGGACTTGCTTGAAGATATGCCAAGACGAGGGTGTTTTCCTGATGTGGTATCCTACAGGACACTTTTTGATGGGCTATGTGAAATGATGCAGTTACAGGAAGCAACTTCCATATTGGATGAGATGATTTTCAAAGGCTATGTGCCTCGATCTGAAAGCATAAACAAACTCGTCGATGTGTTGTGCCAGGAACGCTATATGGAGCAGTTGTGGATGGTTTTGAAGTGTCTAGGAAGAGAAAATGCCATGAATTTTGATATATGGGCTAGAGTTGTTGCTTTTGTTTGCAAGGAGAAGCCATCAGAAGCCTCCAAGTTAATTCATTCATTGATTAGTTAA

Coding sequence (CDS)

ATGCAGACCCATAAGCCAATTTCTCCCTTTCGCCTGTGTTCACTTCTTCGTCTCCAAAAGGACCCTAAACTCGCCCTTCAACTCTTCCACAACCCTAACCCTAACCATAACCCCAACCCCATCTCTTCAAAACCCCCCAAACCCTTCCGCTACTCTTTACTTTCCTATGATCTCATCATCACCAAGCTCGGCCGGGCCAAAATGTTCGATGAAATGGAACAAATCCTCCACCAGCTCAACCAAGAGACTCGTTTTTTTCAACACGAGATTATTTTATGCAATGTCATTTCGTTCTATGGCCGAGCTCGCCTCCCCGGTCGTGCCCGCCAAGTGTTCGACCAAATTCCGTCTTTCCGCTGCAAGCGGACGGTGAAATCGGCGAATTCGTTGTTGGATGCATTGTTGAAGTGCAGGGAATTTGATAAAATGGTGGAAGTTTTTGTGGGCATTGGTAAATATGCCTCCCCTGATGCTTGCACTTTTAATATTTTGATTCATGCTGCTTGTCTGCGTGGTAATTTGGATGCTGCATGGGATGTGTTTGATGAAATGCCAAAGAGAGGTGTGAACCCGAATGTGGTTACTTTTGGAACTTTGATTTATGGGCTTTGTTTGAATTCTAAGTTGAAAGAAGCATTGAAGTTGAAAGAGGATATGGTGAGAGAATATAGGATTCTGCCTAATGCGTCAATATACGCTAGTTTGATCAAAGGGTTCTGTGGGATTGGAGAATTGAACTTGTCTTTCAAGCTAAAGAAGGAAATGGTGACTAACAATGTAAAATTGGACTCGGCAATCTATTCTACTTTAATCAGCGCACTCTTCAAGCATGGTAGGAAAGATGAAGTGTCTGACATTTTTGTAGAAATGGGAGATAATGGGTGCAAACCTGATACTGTCACCTACAATGCCATGATCAATGGGCATTGTAAAGAAAATGATTTCGAATCTGCGTATAGAGTTTTGGATGAGATGGTGGAGAATGGGTGTAAACCAGATGTGATCAGTTTCAATACGATCATTGGAAGATTGTGCAAGGAGAGGAAATGGGATAAGGCTATGGACTTGCTTGAAGATATGCCAAGACGAGGGTGTTTTCCTGATGTGGTATCCTACAGGACACTTTTTGATGGGCTATGTGAAATGATGCAGTTACAGGAAGCAACTTCCATATTGGATGAGATGATTTTCAAAGGCTATGTGCCTCGATCTGAAAGCATAAACAAACTCGTCGATGTGTTGTGCCAGGAACGCTATATGGAGCAGTTGTGGATGGTTTTGAAGTGTCTAGGAAGAGAAAATGCCATGAATTTTGATATATGGGCTAGAGTTGTTGCTTTTGTTTGCAAGGAGAAGCCATCAGAAGCCTCCAAGTTAATTCATTCATTGATTAGTTAA

Protein sequence

MQTHKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLIITKLGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRCKRTVKSANSLLDALLKCREFDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDVFDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFCGIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTVTYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDMPRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYMEQLWMVLKCLGRENAMNFDIWARVVAFVCKEKPSEASKLIHSLIS

Homology

[Close]

BLAST of Sed0018684 vs. NCBI nr
Match: XP_022982178.1 (putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita maxima])

HSP 1 Score: 795.0 bits (2052), Expect = 3.4e-226
Identity = 393/465 (84.52%), Postives = 414/465 (89.03%), Query Frame = 0


Query: 1   MQTHKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLII 60
           M+THK ISPFRLCSLLRLQKDPKLA QLF NPNPN      S+KPPKPFRYSLLSYDLII
Sbjct: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPN------STKPPKPFRYSLLSYDLII 60

Query: 61  TKLGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRC 120
           TKLGRAKMFDEME+ILHQL QETRF  HEII CNVISFYGRARL  RA QVFD+IPS+ C
Sbjct: 61  TKLGRAKMFDEMEEILHQLKQETRFSPHEIIFCNVISFYGRARLLDRAFQVFDKIPSYGC 120

Query: 121 KRTVKSANSLLDALLKCREFDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDV 180
           KRTVKSANSLLDALLKCREF++M EVFVGIG Y SPDACTFNILIHAACL G+LD AW+V
Sbjct: 121 KRTVKSANSLLDALLKCREFERMAEVFVGIGNYGSPDACTFNILIHAACLCGDLDDAWEV 180

Query: 181 FDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 240
           FDEMPKRGV PNVVTFGTLIYGL LNSKL EAL+LKEDMVR YRILPNASIYA+LIKGFC
Sbjct: 181 FDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYRILPNASIYATLIKGFC 240

Query: 241 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 300
           GIG+LNL+FKLK+EMVTN VKLDSAIYST ISALFKHGRK+EV +I  EMG+NGCKPDTV
Sbjct: 241 GIGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTV 300

Query: 301 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 360
           TYN MING CKEND ESAYRVLDEMV+ GCKPDVISFNTI+ RLCKE KWDKAMDLL DM
Sbjct: 301 TYNTMINGQCKENDLESAYRVLDEMVKKGCKPDVISFNTIMERLCKEGKWDKAMDLLADM 360

Query: 361 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 420
           PRRGC PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKL+D LCQE  M
Sbjct: 361 PRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNM 420

Query: 421 EQLWMVLKCLGRENAMNFDIWARVVAFVCKEKPSEASKLIHSLIS 466
           E LWMV   LGR N MN DIWARVVAFVCKEKPSEASKL+  LIS
Sbjct: 421 ELLWMVANSLGRGNVMNVDIWARVVAFVCKEKPSEASKLVDLLIS 459

[Close]

BLAST of Sed0018684 vs. NCBI nr
Match: XP_022941521.1 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita moschata])

HSP 1 Score: 790.8 bits (2041), Expect = 6.4e-225
Identity = 394/465 (84.73%), Postives = 412/465 (88.60%), Query Frame = 0


Query: 1   MQTHKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLII 60
           M+THK ISPFRLCSLLRLQKDPKLA QLF NPNP+      S+KPPKPFRYSLLSYDLII
Sbjct: 19  MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPS------STKPPKPFRYSLLSYDLII 78

Query: 61  TKLGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRC 120
           TKLGRAKMFDEME+ILHQL QETRF  HEII CNVISFYGRARL  RA QVFD+IPSF C
Sbjct: 79  TKLGRAKMFDEMEEILHQLKQETRFAPHEIIFCNVISFYGRARLLDRAFQVFDKIPSFGC 138

Query: 121 KRTVKSANSLLDALLKCREFDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDV 180
           KRTVKSANSLLDALLKCREF+KM EVFVGIG Y SPDACTFNILIHAACL G+LD AW+V
Sbjct: 139 KRTVKSANSLLDALLKCREFEKMAEVFVGIGNYGSPDACTFNILIHAACLCGDLDDAWEV 198

Query: 181 FDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 240
           FDEMPKRGV PNVVTFGTLIYGL LNSKL EAL+LKEDMVR YRILPNASIYA+LIKGFC
Sbjct: 199 FDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYRILPNASIYATLIKGFC 258

Query: 241 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 300
           G G+LNL+FKLK+EMVTN VKLDSAIYST ISALFKHGRK+EV  I  EMG+NGCKPDTV
Sbjct: 259 GSGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPGILAEMGENGCKPDTV 318

Query: 301 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 360
           TYNAMING CKEND ESAYRVLDEMV+ GCKPDVISFNTI+GRLCKE KWDKAMDLL DM
Sbjct: 319 TYNAMINGQCKENDLESAYRVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADM 378

Query: 361 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 420
           PRRGC PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVD LCQE  M
Sbjct: 379 PRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDRLCQESNM 438

Query: 421 EQLWMVLKCLGRENAMNFDIWARVVAFVCKEKPSEASKLIHSLIS 466
           E LWMV+  L R N MN DIWARVVAFVCKEK SEASKL   LIS
Sbjct: 439 ELLWMVVNSLARGNVMNVDIWARVVAFVCKEKASEASKLCDLLIS 477

[Close]

BLAST of Sed0018684 vs. NCBI nr
Match: KAG6607949.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 788.5 bits (2035), Expect = 3.2e-224
Identity = 393/465 (84.52%), Postives = 412/465 (88.60%), Query Frame = 0


Query: 1   MQTHKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLII 60
           M+T K ISPFRLCSLLRLQKDPKLA QLF NPNP+      S+KPPKPFRYSLLSYDLII
Sbjct: 1   MKTQKLISPFRLCSLLRLQKDPKLAFQLFLNPNPS------STKPPKPFRYSLLSYDLII 60

Query: 61  TKLGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRC 120
           TKLGRAKMFDEME+ILHQL QETRF  HEII CNVISFYGRARL  RA QVFD+IPSF C
Sbjct: 61  TKLGRAKMFDEMEEILHQLKQETRFAPHEIIFCNVISFYGRARLLDRAFQVFDKIPSFGC 120

Query: 121 KRTVKSANSLLDALLKCREFDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDV 180
           KRTVKSANSLLDALLKCREF+KM EVFVGIG Y SPDAC+FNILIHAACL G+LD AW+V
Sbjct: 121 KRTVKSANSLLDALLKCREFEKMAEVFVGIGNYGSPDACSFNILIHAACLCGDLDDAWEV 180

Query: 181 FDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 240
           FDEMPKRGV PNVVTFGTLIYGL LNSKL EAL+LKEDMVR YRILPNASIYA+LIKGFC
Sbjct: 181 FDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYRILPNASIYATLIKGFC 240

Query: 241 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 300
           GIG+LNL+FKLK+EMVTN VKLDSAIYST ISALFKHGRK+EV  I  EMG+NGCKPDTV
Sbjct: 241 GIGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPGILAEMGENGCKPDTV 300

Query: 301 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 360
           TYNAMING CKEND ESAYRVLDEMV+ GCKPDVISFNTI+GRLCKE KWDKAMDLL DM
Sbjct: 301 TYNAMINGQCKENDLESAYRVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADM 360

Query: 361 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 420
           PRRGC PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVD LCQE  M
Sbjct: 361 PRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDRLCQESNM 420

Query: 421 EQLWMVLKCLGRENAMNFDIWARVVAFVCKEKPSEASKLIHSLIS 466
           E LWMV+  L R N MN DIWARVVAFVCKEK SEASKL   LIS
Sbjct: 421 ELLWMVVNSLARGNVMNVDIWARVVAFVCKEKASEASKLCDLLIS 459

[Close]

BLAST of Sed0018684 vs. NCBI nr
Match: KAG7037464.1 (putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 788.1 bits (2034), Expect = 4.1e-224
Identity = 392/465 (84.30%), Postives = 411/465 (88.39%), Query Frame = 0


Query: 1   MQTHKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLII 60
           M+T K ISPFRLCSLLRLQKDPKLA QLF NPNP+      S+KPPKPFRYSLLSYDLII
Sbjct: 1   MKTQKLISPFRLCSLLRLQKDPKLAFQLFLNPNPS------STKPPKPFRYSLLSYDLII 60

Query: 61  TKLGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRC 120
           TKLGRAKMFDEME+ILHQL QETRF  HEII CNVISFYGRARL  RA QVFD+IPSF C
Sbjct: 61  TKLGRAKMFDEMEEILHQLKQETRFAPHEIIFCNVISFYGRARLLDRAFQVFDKIPSFGC 120

Query: 121 KRTVKSANSLLDALLKCREFDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDV 180
           KRTVKSANSLLDALLKCREF+KM EVFVGIG Y SPDACTFNILIHAACL G+LD AW+V
Sbjct: 121 KRTVKSANSLLDALLKCREFEKMAEVFVGIGNYGSPDACTFNILIHAACLCGDLDDAWEV 180

Query: 181 FDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 240
           FDEMPKRG  PNVVTFGTLIYGL LNSKL EAL+LKEDMVR YRILPNASIYA+LIKGFC
Sbjct: 181 FDEMPKRGAKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYRILPNASIYATLIKGFC 240

Query: 241 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 300
           GIG+LNL+FKLK+EMVTN VKLDSAIYST ISA FKHGRK+EV +I  EMG+NGCKPDTV
Sbjct: 241 GIGDLNLAFKLKEEMVTNKVKLDSAIYSTFISAFFKHGRKEEVPEILAEMGENGCKPDTV 300

Query: 301 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 360
           TYNAMING CKEND ESAYRVLDEMV+ GCKPDVISFNTI+GRLCKE KWDKAMDLL DM
Sbjct: 301 TYNAMINGQCKENDLESAYRVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADM 360

Query: 361 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 420
           PRRGC PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVD LCQE  M
Sbjct: 361 PRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDRLCQESNM 420

Query: 421 EQLWMVLKCLGRENAMNFDIWARVVAFVCKEKPSEASKLIHSLIS 466
           E LWMV+  L R N MN DIWARVVAFVCKEK SEASKL   LIS
Sbjct: 421 ELLWMVVNSLARGNVMNVDIWARVVAFVCKEKASEASKLCDLLIS 459

[Close]

BLAST of Sed0018684 vs. NCBI nr
Match: XP_023523314.1 (putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 784.6 bits (2025), Expect = 4.6e-223
Identity = 390/465 (83.87%), Postives = 412/465 (88.60%), Query Frame = 0


Query: 1   MQTHKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLII 60
           M+THK ISPFRLCSLLRLQKDPKLA QLF NPNP+      S+KPPKPFRYSLLSYDLII
Sbjct: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPS------STKPPKPFRYSLLSYDLII 60

Query: 61  TKLGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRC 120
           TKLGRAKMFDEME+ILHQL QETRF  +EII CNVISFYGRARL  RA QVFD+IPS+ C
Sbjct: 61  TKLGRAKMFDEMEEILHQLKQETRFAPNEIIFCNVISFYGRARLLDRAFQVFDKIPSYGC 120

Query: 121 KRTVKSANSLLDALLKCREFDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDV 180
           KRTVKSANSLLDALLKCREF+KM EVFV IG Y SPDACTFNILIHAACL G+LD AW+V
Sbjct: 121 KRTVKSANSLLDALLKCREFEKMAEVFVSIGNYGSPDACTFNILIHAACLCGDLDDAWEV 180

Query: 181 FDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 240
           FDEMPKRGV PNVVTFGTLIYGL LNSKL EAL+LKEDMVR Y ILPNASIYA+LIKGFC
Sbjct: 181 FDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYGILPNASIYATLIKGFC 240

Query: 241 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 300
           GIG+LNL+FKLK+EMVTN VKLDSAIYST ISALFKHGRK+EV +I  EMG+NGCKPDTV
Sbjct: 241 GIGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTV 300

Query: 301 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 360
           TYNAMING CKEND ESAY+VLDEMV+ GCKPDVISFNTI+GRLCKE KWDKAMDLL DM
Sbjct: 301 TYNAMINGQCKENDLESAYKVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADM 360

Query: 361 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 420
           PRRGC PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKL+D LCQE  M
Sbjct: 361 PRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNM 420

Query: 421 EQLWMVLKCLGRENAMNFDIWARVVAFVCKEKPSEASKLIHSLIS 466
           E LWMVL  LGR N MN DIWARVVAFVCK K SEASKL   LIS
Sbjct: 421 ELLWMVLNSLGRGNVMNVDIWARVVAFVCKVKASEASKLCDLLIS 459

[Close]

BLAST of Sed0018684 vs. ExPASy Swiss-Prot
Match: Q9MAG8 (Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana OX=3702 GN=At1g53330 PE=3 SV=1)

HSP 1 Score: 506.5 bits (1303), Expect = 3.1e-142
Identity = 249/451 (55.21%), Postives = 316/451 (70.07%), Query Frame = 0


Query: 1   MQTHKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLII 60
           M   K +S FRL SLLR + DP  A++LF NP+P       S+ P +PFRYSLL YD+II
Sbjct: 1   MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPE------STNPKRPFRYSLLCYDIII 60

Query: 61  TKLGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRC 120
           TKLG +KMFDE++Q+L  L  +TR    EII CNVI+F+GR +LP RA  +FD++P +RC
Sbjct: 61  TKLGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRC 120

Query: 121 KRTVKSANSLLDALLKCREFDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDV 180
           +RTVKS NSLL ALLKC E +KM E    I ++  PDACT+NILIH     G  D A  +
Sbjct: 121 QRTVKSLNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKL 180

Query: 181 FDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 240
           FDEM K+ V P  VTFGTLI+GLC +S++KEALK+K DM++ Y + P   IYASLIK  C
Sbjct: 181 FDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALC 240

Query: 241 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 300
            IGEL+ +FKLK E     +K+D+AIYSTLIS+L K GR +EVS I  EM + GCKPDTV
Sbjct: 241 QIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTV 300

Query: 301 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 360
           TYN +ING C END ESA RVLDEMVE G KPDVIS+N I+G   + +KW++A  L EDM
Sbjct: 301 TYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDM 360

Query: 361 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 420
           PRRGC PD +SYR +FDGLCE +Q +EA  ILDEM+FKGY PR + +   +  LC+   +
Sbjct: 361 PRRGCSPDTLSYRIVFDGLCEGLQFEEAAVILDEMLFKGYKPRRDRLEGFLQKLCESGKL 420

Query: 421 EQLWMVLKCLGRENAMNFDIWARVVAFVCKE 452
           E L  V+  L R  A + D+W+ ++  +CKE
Sbjct: 421 EILSKVISSLHRGIAGDADVWSVMIPTMCKE 445

[Close]

BLAST of Sed0018684 vs. ExPASy Swiss-Prot
Match: Q9LQQ1 (Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g07740 PE=2 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.7e-50
Identity = 138/414 (33.33%), Postives = 203/414 (49.03%), Query Frame = 0


Query: 3   THKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLIITK 62
           T KP       + L+  +DP+ AL LFH                  FR+   SY  +I K
Sbjct: 43  TRKPWEEVPFLTDLKEIEDPEEALSLFH------------QYQEMGFRHDYPSYSSLIYK 102

Query: 63  LGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRCKR 122
           L +++ FD ++QIL +L +       E +   +I  YG+A    +A  VF +I SF C R
Sbjct: 103 LAKSRNFDAVDQIL-RLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVR 162

Query: 123 TVKSANSLLDALLKCREFDKMVEVFVGI-GKYASPDACTFNILIHAACLRGNLDAAWDVF 182
           T++S N+L++ L+   E +K    F G       P++ +FNILI     + + +AA  VF
Sbjct: 163 TIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVF 222

Query: 183 DEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFCG 242
           DEM +  V P+VVT+ +LI  LC N  + +A  L EDM+++ RI PNA  +  L+KG C 
Sbjct: 223 DEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKK-RIRPNAVTFGLLMKGLCC 282

Query: 243 IGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTVT 302
            GE N + KL  +M     K     Y  L+S L K GR DE   +  EM     KPD V 
Sbjct: 283 KGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVI 342

Query: 303 YNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDMP 362
           YN ++N  C E     AYRVL EM   GCKP+  ++  +I   C+   +D  +++L  M 
Sbjct: 343 YNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMIDGFCRIEDFDSGLNVLNAML 402

Query: 363 RRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLC 416
                P   ++  +  GL +   L  A  +L+ M  K     S +   L+  LC
Sbjct: 403 ASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMGKKNLSFGSGAWQNLLSDLC 442

[Close]

BLAST of Sed0018684 vs. ExPASy Swiss-Prot
Match: Q3E9F0 (Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana OX=3702 GN=At5g18475 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.1e-49
Identity = 134/467 (28.69%), Postives = 235/467 (50.32%), Query Frame = 0


Query: 5   KPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLIITKLG 64
           K IS     SL++ ++DP+  L +F+            +   K F ++  +Y +++  L 
Sbjct: 52  KFISHESAVSLMKRERDPQGVLDIFN-----------KASQQKGFNHNNATYSVLLDNLV 111

Query: 65  RAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSF-RCKRT 124
           R K F  ++ ILHQ+  ET  FQ  + L N++  + R+ L  +  ++F+ I    R K +
Sbjct: 112 RHKKFLAVDAILHQMKYETCRFQESLFL-NLMRHFSRSDLHDKVMEMFNLIQVIARVKPS 171

Query: 125 VKSANSLLDALLKCRE--FDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDVF 184
           + + ++ L+ L+   E    + + ++        P+ C FNIL+   C  G+++ A+ V 
Sbjct: 172 LNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVV 231

Query: 185 DEMPKRGVN-PNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 244
           +EM + G++ PN +T+ TL+  L  +S+ KEA++L EDM+ +  I P+   +  +I GFC
Sbjct: 232 EEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFC 291

Query: 245 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 304
             GE+  + K+   M  N    +   YS L++   K G+  E    F E+   G K DTV
Sbjct: 292 RAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTV 351

Query: 305 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 364
            Y  ++N  C+  + + A ++L EM  + C+ D +++N I+  L  E + ++A+ +L+  
Sbjct: 352 GYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQW 411

Query: 365 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 424
              G   +  SYR + + LC   +L++A   L  M  +G  P   + N+LV  LC+  Y 
Sbjct: 412 GSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCESGYT 471

Query: 425 EQLWMVLKCLGRENAM-NFDIWARVVAFVCKE-KPSEASKLIHSLIS 466
           E    VL    R   +     W  VV  +CKE K     +L+ SL+S
Sbjct: 472 EIGVRVLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFELLDSLVS 506

[Close]

BLAST of Sed0018684 vs. ExPASy Swiss-Prot
Match: Q9FIX3 (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX=3702 GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 5.9e-48
Identity = 97/316 (30.70%), Postives = 164/316 (51.90%), Query Frame = 0


Query: 108 ARQVFDQIPSFRCKRTVKSANSLLDALLKCREFDKMVEVFVGIG-KYASPDACTFNILIH 167
           A  +FD++ +  C   V + N+L+D   K R+ D   ++   +  K   P+  ++N++I+
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283

Query: 168 AACLRGNLDAAWDVFDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRIL 227
             C  G +     V  EM +RG + + VT+ TLI G C      +AL +  +M+R + + 
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR-HGLT 343

Query: 228 PNASIYASLIKGFCGIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDI 287
           P+   Y SLI   C  G +N + +   +M    +  +   Y+TL+    + G  +E   +
Sbjct: 344 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 403

Query: 288 FVEMGDNGCKPDTVTYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCK 347
             EM DNG  P  VTYNA+INGHC     E A  VL++M E G  PDV+S++T++   C+
Sbjct: 404 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 463

Query: 348 ERKWDKAMDLLEDMPRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSES 407
               D+A+ +  +M  +G  PD ++Y +L  G CE  + +EA  + +EM+  G  P   +
Sbjct: 464 SYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFT 523

Query: 408 INKLVDVLCQERYMEQ 423
              L++  C E  +E+
Sbjct: 524 YTALINAYCMEGDLEK 538

[Close]

BLAST of Sed0018684 vs. ExPASy Swiss-Prot
Match: O49436 (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX=3702 GN=EMB1025 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.2e-46
Identity = 133/417 (31.89%), Postives = 205/417 (49.16%), Query Frame = 0


Query: 31  NPNPN----HNP--NPISSK----PPK--PFRYSLLSYDLIITKLGRAKMFDEMEQILHQ 90
           +PNP+     NP   PIS K     PK   F+    +   +I     +  FD +E++L +
Sbjct: 43  SPNPSMEVVENPLEAPISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSR 102

Query: 91  LNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQ-IPSFRCKRTVKSANSLLDALLKC 150
           +  E R       +  V   YG+A LP +A  +F + +  FRCKR+VKS NS+L+ ++  
Sbjct: 103 IRLENRVIIERSFIV-VFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINE 162

Query: 151 REFDKMVEVF-----VGIGKYASPDACTFNILIHAACLRGNLDAAWDVFDEMPKRGVNPN 210
             + + +E +       +    SP+  +FN++I A C    +D A +VF  MP+R   P+
Sbjct: 163 GLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPD 222

Query: 211 VVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFCGIGELNLSFKLK 270
             T+ TL+ GLC   ++ EA+ L ++M  E    P+  IY  LI G C  G+L    KL 
Sbjct: 223 GYTYCTLMDGLCKEERIDEAVLLLDEMQSE-GCSPSPVIYNVLIDGLCKKGDLTRVTKLV 282

Query: 271 KEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTVTYNAMINGHCKE 330
             M       +   Y+TLI  L   G+ D+   +   M  + C P+ VTY  +ING  K+
Sbjct: 283 DNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQ 342

Query: 331 NDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDMPRRGCFPDVVSY 390
                A R+L  M E G   +   ++ +I  L KE K ++AM L   M  +GC P++V Y
Sbjct: 343 RRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVY 402

Query: 391 RTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLV-----DVLCQERYMEQLW 425
             L DGLC   +  EA  IL+ MI  G +P + + + L+       LC+E    Q+W
Sbjct: 403 SVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAV--QVW 455

[Close]

BLAST of Sed0018684 vs. ExPASy TrEMBL
Match: A0A6J1J467 (putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucurbita maxima OX=3661 GN=LOC111481084 PE=4 SV=1)

HSP 1 Score: 795.0 bits (2052), Expect = 1.6e-226
Identity = 393/465 (84.52%), Postives = 414/465 (89.03%), Query Frame = 0


Query: 1   MQTHKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLII 60
           M+THK ISPFRLCSLLRLQKDPKLA QLF NPNPN      S+KPPKPFRYSLLSYDLII
Sbjct: 1   MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPN------STKPPKPFRYSLLSYDLII 60

Query: 61  TKLGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRC 120
           TKLGRAKMFDEME+ILHQL QETRF  HEII CNVISFYGRARL  RA QVFD+IPS+ C
Sbjct: 61  TKLGRAKMFDEMEEILHQLKQETRFSPHEIIFCNVISFYGRARLLDRAFQVFDKIPSYGC 120

Query: 121 KRTVKSANSLLDALLKCREFDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDV 180
           KRTVKSANSLLDALLKCREF++M EVFVGIG Y SPDACTFNILIHAACL G+LD AW+V
Sbjct: 121 KRTVKSANSLLDALLKCREFERMAEVFVGIGNYGSPDACTFNILIHAACLCGDLDDAWEV 180

Query: 181 FDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 240
           FDEMPKRGV PNVVTFGTLIYGL LNSKL EAL+LKEDMVR YRILPNASIYA+LIKGFC
Sbjct: 181 FDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYRILPNASIYATLIKGFC 240

Query: 241 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 300
           GIG+LNL+FKLK+EMVTN VKLDSAIYST ISALFKHGRK+EV +I  EMG+NGCKPDTV
Sbjct: 241 GIGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPEILAEMGENGCKPDTV 300

Query: 301 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 360
           TYN MING CKEND ESAYRVLDEMV+ GCKPDVISFNTI+ RLCKE KWDKAMDLL DM
Sbjct: 301 TYNTMINGQCKENDLESAYRVLDEMVKKGCKPDVISFNTIMERLCKEGKWDKAMDLLADM 360

Query: 361 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 420
           PRRGC PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKL+D LCQE  M
Sbjct: 361 PRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLIDRLCQESNM 420

Query: 421 EQLWMVLKCLGRENAMNFDIWARVVAFVCKEKPSEASKLIHSLIS 466
           E LWMV   LGR N MN DIWARVVAFVCKEKPSEASKL+  LIS
Sbjct: 421 ELLWMVANSLGRGNVMNVDIWARVVAFVCKEKPSEASKLVDLLIS 459

[Close]

BLAST of Sed0018684 vs. ExPASy TrEMBL
Match: A0A6J1FLC2 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucurbita moschata OX=3662 GN=LOC111446799 PE=4 SV=1)

HSP 1 Score: 790.8 bits (2041), Expect = 3.1e-225
Identity = 394/465 (84.73%), Postives = 412/465 (88.60%), Query Frame = 0


Query: 1   MQTHKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLII 60
           M+THK ISPFRLCSLLRLQKDPKLA QLF NPNP+      S+KPPKPFRYSLLSYDLII
Sbjct: 19  MKTHKLISPFRLCSLLRLQKDPKLAFQLFLNPNPS------STKPPKPFRYSLLSYDLII 78

Query: 61  TKLGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRC 120
           TKLGRAKMFDEME+ILHQL QETRF  HEII CNVISFYGRARL  RA QVFD+IPSF C
Sbjct: 79  TKLGRAKMFDEMEEILHQLKQETRFAPHEIIFCNVISFYGRARLLDRAFQVFDKIPSFGC 138

Query: 121 KRTVKSANSLLDALLKCREFDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDV 180
           KRTVKSANSLLDALLKCREF+KM EVFVGIG Y SPDACTFNILIHAACL G+LD AW+V
Sbjct: 139 KRTVKSANSLLDALLKCREFEKMAEVFVGIGNYGSPDACTFNILIHAACLCGDLDDAWEV 198

Query: 181 FDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 240
           FDEMPKRGV PNVVTFGTLIYGL LNSKL EAL+LKEDMVR YRILPNASIYA+LIKGFC
Sbjct: 199 FDEMPKRGVKPNVVTFGTLIYGLSLNSKLDEALRLKEDMVRVYRILPNASIYATLIKGFC 258

Query: 241 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 300
           G G+LNL+FKLK+EMVTN VKLDSAIYST ISALFKHGRK+EV  I  EMG+NGCKPDTV
Sbjct: 259 GSGDLNLAFKLKEEMVTNKVKLDSAIYSTFISALFKHGRKEEVPGILAEMGENGCKPDTV 318

Query: 301 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 360
           TYNAMING CKEND ESAYRVLDEMV+ GCKPDVISFNTI+GRLCKE KWDKAMDLL DM
Sbjct: 319 TYNAMINGQCKENDLESAYRVLDEMVKKGCKPDVISFNTIMGRLCKEGKWDKAMDLLADM 378

Query: 361 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 420
           PRRGC PDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVD LCQE  M
Sbjct: 379 PRRGCSPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDRLCQESNM 438

Query: 421 EQLWMVLKCLGRENAMNFDIWARVVAFVCKEKPSEASKLIHSLIS 466
           E LWMV+  L R N MN DIWARVVAFVCKEK SEASKL   LIS
Sbjct: 439 ELLWMVVNSLARGNVMNVDIWARVVAFVCKEKASEASKLCDLLIS 477

[Close]

BLAST of Sed0018684 vs. ExPASy TrEMBL
Match: A0A6J1BRW9 (putative pentatricopeptide repeat-containing protein At1g53330 OS=Momordica charantia OX=3673 GN=LOC111004838 PE=4 SV=1)

HSP 1 Score: 754.6 bits (1947), Expect = 2.5e-214
Identity = 374/465 (80.43%), Postives = 409/465 (87.96%), Query Frame = 0


Query: 1   MQTHKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLII 60
           M+THKPISPFRLCSLLRLQKDPK+A Q F +PNP+      ++KPPKPFRYSLLSYDLII
Sbjct: 1   MKTHKPISPFRLCSLLRLQKDPKIAFQHFQSPNPS------AAKPPKPFRYSLLSYDLII 60

Query: 61  TKLGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRC 120
           +KLGRAK+FDEMEQ+L QL QETRF   EII CNVISFYGRARLP RA QVF++IPSF C
Sbjct: 61  SKLGRAKLFDEMEQVLLQLKQETRFAPSEIIFCNVISFYGRARLPDRAFQVFERIPSFGC 120

Query: 121 KRTVKSANSLLDALLKCREFDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDV 180
            RTVKSANSLLDALLKCREF+KM EVFVGIG Y SPDACTFNILIHAA L GN D AW+V
Sbjct: 121 NRTVKSANSLLDALLKCREFEKMAEVFVGIGSYGSPDACTFNILIHAAYLCGNSDDAWEV 180

Query: 181 FDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 240
           FDEM KRG++PNVVTFGTLIYGL LNSKLKEALKLKEDMVR   ILPNASIYA+LIKGFC
Sbjct: 181 FDEMRKRGIHPNVVTFGTLIYGLSLNSKLKEALKLKEDMVRVCGILPNASIYATLIKGFC 240

Query: 241 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 300
           GIGEL L+F+LK+EMVT+ VK+DSAIYSTLISALFKHGRK+EV DI  EM +NGCKPDTV
Sbjct: 241 GIGELILAFELKEEMVTSKVKMDSAIYSTLISALFKHGRKEEVCDILGEMRENGCKPDTV 300

Query: 301 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 360
           TYNAMI+GHCKEND ESA+RVLDEMVE GCKPDVISFN+IIG LCK+ KW++A+DLLEDM
Sbjct: 301 TYNAMISGHCKENDLESAFRVLDEMVEKGCKPDVISFNSIIGELCKKGKWNEAIDLLEDM 360

Query: 361 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 420
           PRRGC PDVVSYRTLFDGLCE MQLQ+ATSILDEMIFKGYVPRSESINKLVD LCQE  +
Sbjct: 361 PRRGCSPDVVSYRTLFDGLCETMQLQKATSILDEMIFKGYVPRSESINKLVDGLCQECDV 420

Query: 421 EQLWMVLKCLGRENAMNFDIWARVVAFVCKEKPSEASKLIHSLIS 466
           E LWMVL  LGR NAMN D WARV+A VCKE  SEASKL+ SL+S
Sbjct: 421 ELLWMVLDSLGRGNAMNMDTWARVIALVCKENMSEASKLVDSLVS 459

[Close]

BLAST of Sed0018684 vs. ExPASy TrEMBL
Match: A0A5A7VBA5 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G004190 PE=4 SV=1)

HSP 1 Score: 747.7 bits (1929), Expect = 3.0e-212
Identity = 374/465 (80.43%), Postives = 403/465 (86.67%), Query Frame = 0


Query: 1   MQTHKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLII 60
           M+T KPISPFRL SLLRL+KDPKLALQLF NPNP+      SS+PPKPFRYSLLSYDLII
Sbjct: 19  MKTQKPISPFRLSSLLRLEKDPKLALQLFLNPNPS------SSEPPKPFRYSLLSYDLII 78

Query: 61  TKLGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRC 120
           +KLGRAKMFDEME+IL QL QETRF  HE+I CNVI+FYGRARLP RA QVF++IP+FRC
Sbjct: 79  SKLGRAKMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRARLPDRAFQVFERIPTFRC 138

Query: 121 KRTVKSANSLLDALLKCREFDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDV 180
           KRTVKS NSLLDALLK REF KM+EV VGIG + SPDACTFNILIHAACL G+LDA W V
Sbjct: 139 KRTVKSVNSLLDALLKSREFGKMMEVLVGIGNHGSPDACTFNILIHAACLCGDLDAVWGV 198

Query: 181 FDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 240
           FDEM KRGV PNVVTFGTLIYGL LNSKLKEAL+LKEDMVR Y I PNASIY +LIKGFC
Sbjct: 199 FDEMRKRGVQPNVVTFGTLIYGLSLNSKLKEALRLKEDMVRVYMIKPNASIYTTLIKGFC 258

Query: 241 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 300
           G+GELN +FKLK+EMVT+ VKLDS IYSTLISALFKHGRK+EVSDI  EMG+NGCKPDT 
Sbjct: 259 GVGELNFAFKLKEEMVTSKVKLDSKIYSTLISALFKHGRKEEVSDILREMGENGCKPDTA 318

Query: 301 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 360
           TYNAMINGHCKEND ESA RV+DEMVE GCKPDVISFNTIIG LCKE K DKAMDLLEDM
Sbjct: 319 TYNAMINGHCKENDLESANRVVDEMVEKGCKPDVISFNTIIGGLCKEGKLDKAMDLLEDM 378

Query: 361 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 420
           PRRGC PDV+SYR +FDGLCEMMQL+EATSILDEMIFKGYVPR+ESINKLVD LCQE  M
Sbjct: 379 PRRGCPPDVLSYRIVFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVDRLCQECNM 438

Query: 421 EQLWMVLKCLGRENAMNFDIWARVVAFVCKEKPSEASKLIHSLIS 466
           E LWMVL  LGR N MN D WARVVAF+ KE   E+S LI SLIS
Sbjct: 439 ELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS 477

[Close]

BLAST of Sed0018684 vs. ExPASy TrEMBL
Match: A0A1S3BT71 (putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucumis melo OX=3656 GN=LOC103493464 PE=4 SV=1)

HSP 1 Score: 747.7 bits (1929), Expect = 3.0e-212
Identity = 374/465 (80.43%), Postives = 403/465 (86.67%), Query Frame = 0


Query: 1   MQTHKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLII 60
           M+T KPISPFRL SLLRL+KDPKLALQLF NPNP+      SS+PPKPFRYSLLSYDLII
Sbjct: 67  MKTQKPISPFRLSSLLRLEKDPKLALQLFLNPNPS------SSEPPKPFRYSLLSYDLII 126

Query: 61  TKLGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRC 120
           +KLGRAKMFDEME+IL QL QETRF  HE+I CNVI+FYGRARLP RA QVF++IP+FRC
Sbjct: 127 SKLGRAKMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRARLPDRAFQVFERIPTFRC 186

Query: 121 KRTVKSANSLLDALLKCREFDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDV 180
           KRTVKS NSLLDALLK REF KM+EV VGIG + SPDACTFNILIHAACL G+LDA W V
Sbjct: 187 KRTVKSVNSLLDALLKSREFGKMMEVLVGIGNHGSPDACTFNILIHAACLCGDLDAVWGV 246

Query: 181 FDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 240
           FDEM KRGV PNVVTFGTLIYGL LNSKLKEAL+LKEDMVR Y I PNASIY +LIKGFC
Sbjct: 247 FDEMRKRGVQPNVVTFGTLIYGLSLNSKLKEALRLKEDMVRVYMIKPNASIYTTLIKGFC 306

Query: 241 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 300
           G+GELN +FKLK+EMVT+ VKLDS IYSTLISALFKHGRK+EVSDI  EMG+NGCKPDT 
Sbjct: 307 GVGELNFAFKLKEEMVTSKVKLDSKIYSTLISALFKHGRKEEVSDILREMGENGCKPDTA 366

Query: 301 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 360
           TYNAMINGHCKEND ESA RV+DEMVE GCKPDVISFNTIIG LCKE K DKAMDLLEDM
Sbjct: 367 TYNAMINGHCKENDLESANRVVDEMVEKGCKPDVISFNTIIGGLCKEGKLDKAMDLLEDM 426

Query: 361 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 420
           PRRGC PDV+SYR +FDGLCEMMQL+EATSILDEMIFKGYVPR+ESINKLVD LCQE  M
Sbjct: 427 PRRGCPPDVLSYRIVFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVDRLCQECNM 486

Query: 421 EQLWMVLKCLGRENAMNFDIWARVVAFVCKEKPSEASKLIHSLIS 466
           E LWMVL  LGR N MN D WARVVAF+ KE   E+S LI SLIS
Sbjct: 487 ELLWMVLNSLGRGNRMNMDTWARVVAFLYKENLLESSNLIDSLIS 525

[Close]

BLAST of Sed0018684 vs. TAIR 10
Match: AT1G53330.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 506.5 bits (1303), Expect = 2.2e-143
Identity = 249/451 (55.21%), Postives = 316/451 (70.07%), Query Frame = 0


Query: 1   MQTHKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLII 60
           M   K +S FRL SLLR + DP  A++LF NP+P       S+ P +PFRYSLL YD+II
Sbjct: 1   MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPE------STNPKRPFRYSLLCYDIII 60

Query: 61  TKLGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRC 120
           TKLG +KMFDE++Q+L  L  +TR    EII CNVI+F+GR +LP RA  +FD++P +RC
Sbjct: 61  TKLGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRC 120

Query: 121 KRTVKSANSLLDALLKCREFDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDV 180
           +RTVKS NSLL ALLKC E +KM E    I ++  PDACT+NILIH     G  D A  +
Sbjct: 121 QRTVKSLNSLLSALLKCGELEKMKERLSSIDEFGKPDACTYNILIHGCSQSGCFDDALKL 180

Query: 181 FDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 240
           FDEM K+ V P  VTFGTLI+GLC +S++KEALK+K DM++ Y + P   IYASLIK  C
Sbjct: 181 FDEMVKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALC 240

Query: 241 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 300
            IGEL+ +FKLK E     +K+D+AIYSTLIS+L K GR +EVS I  EM + GCKPDTV
Sbjct: 241 QIGELSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTV 300

Query: 301 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 360
           TYN +ING C END ESA RVLDEMVE G KPDVIS+N I+G   + +KW++A  L EDM
Sbjct: 301 TYNVLINGFCVENDSESANRVLDEMVEKGLKPDVISYNMILGVFFRIKKWEEATYLFEDM 360

Query: 361 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 420
           PRRGC PD +SYR +FDGLCE +Q +EA  ILDEM+FKGY PR + +   +  LC+   +
Sbjct: 361 PRRGCSPDTLSYRIVFDGLCEGLQFEEAAVILDEMLFKGYKPRRDRLEGFLQKLCESGKL 420

Query: 421 EQLWMVLKCLGRENAMNFDIWARVVAFVCKE 452
           E L  V+  L R  A + D+W+ ++  +CKE
Sbjct: 421 EILSKVISSLHRGIAGDADVWSVMIPTMCKE 445

[Close]

BLAST of Sed0018684 vs. TAIR 10
Match: AT1G07740.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 201.8 bits (512), Expect = 1.2e-51
Identity = 138/414 (33.33%), Postives = 203/414 (49.03%), Query Frame = 0


Query: 3   THKPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLIITK 62
           T KP       + L+  +DP+ AL LFH                  FR+   SY  +I K
Sbjct: 43  TRKPWEEVPFLTDLKEIEDPEEALSLFH------------QYQEMGFRHDYPSYSSLIYK 102

Query: 63  LGRAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSFRCKR 122
           L +++ FD ++QIL +L +       E +   +I  YG+A    +A  VF +I SF C R
Sbjct: 103 LAKSRNFDAVDQIL-RLVRYRNVRCRESLFMGLIQHYGKAGSVDKAIDVFHKITSFDCVR 162

Query: 123 TVKSANSLLDALLKCREFDKMVEVFVGI-GKYASPDACTFNILIHAACLRGNLDAAWDVF 182
           T++S N+L++ L+   E +K    F G       P++ +FNILI     + + +AA  VF
Sbjct: 163 TIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVF 222

Query: 183 DEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFCG 242
           DEM +  V P+VVT+ +LI  LC N  + +A  L EDM+++ RI PNA  +  L+KG C 
Sbjct: 223 DEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMIKK-RIRPNAVTFGLLMKGLCC 282

Query: 243 IGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTVT 302
            GE N + KL  +M     K     Y  L+S L K GR DE   +  EM     KPD V 
Sbjct: 283 KGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVI 342

Query: 303 YNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDMP 362
           YN ++N  C E     AYRVL EM   GCKP+  ++  +I   C+   +D  +++L  M 
Sbjct: 343 YNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMIDGFCRIEDFDSGLNVLNAML 402

Query: 363 RRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLC 416
                P   ++  +  GL +   L  A  +L+ M  K     S +   L+  LC
Sbjct: 403 ASRHCPTPATFVCMVAGLIKGGNLDHACFVLEVMGKKNLSFGSGAWQNLLSDLC 442

[Close]

BLAST of Sed0018684 vs. TAIR 10
Match: AT5G18475.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 199.1 bits (505), Expect = 7.6e-51
Identity = 134/467 (28.69%), Postives = 235/467 (50.32%), Query Frame = 0


Query: 5   KPISPFRLCSLLRLQKDPKLALQLFHNPNPNHNPNPISSKPPKPFRYSLLSYDLIITKLG 64
           K IS     SL++ ++DP+  L +F+            +   K F ++  +Y +++  L 
Sbjct: 52  KFISHESAVSLMKRERDPQGVLDIFN-----------KASQQKGFNHNNATYSVLLDNLV 111

Query: 65  RAKMFDEMEQILHQLNQETRFFQHEIILCNVISFYGRARLPGRARQVFDQIPSF-RCKRT 124
           R K F  ++ ILHQ+  ET  FQ  + L N++  + R+ L  +  ++F+ I    R K +
Sbjct: 112 RHKKFLAVDAILHQMKYETCRFQESLFL-NLMRHFSRSDLHDKVMEMFNLIQVIARVKPS 171

Query: 125 VKSANSLLDALLKCRE--FDKMVEVFVGIGKYASPDACTFNILIHAACLRGNLDAAWDVF 184
           + + ++ L+ L+   E    + + ++        P+ C FNIL+   C  G+++ A+ V 
Sbjct: 172 LNAISTCLNLLIDSGEVNLSRKLLLYAKHNLGLQPNTCIFNILVKHHCKNGDINFAFLVV 231

Query: 185 DEMPKRGVN-PNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFC 244
           +EM + G++ PN +T+ TL+  L  +S+ KEA++L EDM+ +  I P+   +  +I GFC
Sbjct: 232 EEMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFC 291

Query: 245 GIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTV 304
             GE+  + K+   M  N    +   YS L++   K G+  E    F E+   G K DTV
Sbjct: 292 RAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTV 351

Query: 305 TYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDM 364
            Y  ++N  C+  + + A ++L EM  + C+ D +++N I+  L  E + ++A+ +L+  
Sbjct: 352 GYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQW 411

Query: 365 PRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQERYM 424
              G   +  SYR + + LC   +L++A   L  M  +G  P   + N+LV  LC+  Y 
Sbjct: 412 GSEGVHLNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELVVRLCESGYT 471

Query: 425 EQLWMVLKCLGRENAM-NFDIWARVVAFVCKE-KPSEASKLIHSLIS 466
           E    VL    R   +     W  VV  +CKE K     +L+ SL+S
Sbjct: 472 EIGVRVLIGFLRIGLIPGPKSWGAVVESICKERKLVHVFELLDSLVS 506

[Close]

BLAST of Sed0018684 vs. TAIR 10
Match: AT5G39710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 193.4 bits (490), Expect = 4.2e-49
Identity = 97/316 (30.70%), Postives = 164/316 (51.90%), Query Frame = 0


Query: 108 ARQVFDQIPSFRCKRTVKSANSLLDALLKCREFDKMVEVFVGIG-KYASPDACTFNILIH 167
           A  +FD++ +  C   V + N+L+D   K R+ D   ++   +  K   P+  ++N++I+
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283

Query: 168 AACLRGNLDAAWDVFDEMPKRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRIL 227
             C  G +     V  EM +RG + + VT+ TLI G C      +AL +  +M+R + + 
Sbjct: 284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR-HGLT 343

Query: 228 PNASIYASLIKGFCGIGELNLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDI 287
           P+   Y SLI   C  G +N + +   +M    +  +   Y+TL+    + G  +E   +
Sbjct: 344 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 403

Query: 288 FVEMGDNGCKPDTVTYNAMINGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCK 347
             EM DNG  P  VTYNA+INGHC     E A  VL++M E G  PDV+S++T++   C+
Sbjct: 404 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 463

Query: 348 ERKWDKAMDLLEDMPRRGCFPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSES 407
               D+A+ +  +M  +G  PD ++Y +L  G CE  + +EA  + +EM+  G  P   +
Sbjct: 464 SYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFT 523

Query: 408 INKLVDVLCQERYMEQ 423
              L++  C E  +E+
Sbjct: 524 YTALINAYCMEGDLEK 538

[Close]

BLAST of Sed0018684 vs. TAIR 10
Match: AT1G12300.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 187.6 bits (475), Expect = 2.3e-47
Identity = 96/291 (32.99%), Postives = 159/291 (54.64%), Query Frame = 0


Query: 130 LLDALLKCREFDKMVEVFVGIGKYA----SPDACTFNILIHAACLRGNLDAAWDVFDEMP 189
           +++   +CR   K+   F  +GK       P+  TF+ LI+  CL G +  A ++ D M 
Sbjct: 129 MINCFCRCR---KLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV 188

Query: 190 KRGVNPNVVTFGTLIYGLCLNSKLKEALKLKEDMVREYRILPNASIYASLIKGFCGIGEL 249
           + G  P+++T  TL+ GLCL+ K  EA+ L + MV EY   PNA  Y  ++   C  G+ 
Sbjct: 189 EMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV-EYGCQPNAVTYGPVLNVMCKSGQT 248

Query: 250 NLSFKLKKEMVTNNVKLDSAIYSTLISALFKHGRKDEVSDIFVEMGDNGCKPDTVTYNAM 309
            L+ +L ++M   N+KLD+  YS +I  L KHG  D   ++F EM   G   + +TYN +
Sbjct: 249 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNIL 308

Query: 310 INGHCKENDFESAYRVLDEMVENGCKPDVISFNTIIGRLCKERKWDKAMDLLEDMPRRGC 369
           I G C    ++   ++L +M++    P+V++F+ +I    KE K  +A +L ++M  RG 
Sbjct: 309 IGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGI 368

Query: 370 FPDVVSYRTLFDGLCEMMQLQEATSILDEMIFKGYVPRSESINKLVDVLCQ 417
            PD ++Y +L DG C+   L +A  ++D M+ KG  P   + N L++  C+
Sbjct: 369 APDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCK 415

The following BLAST results are available for this feature:

BLAST of Sed0018684 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982178.1	3.4e-226	84.52	putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita maxima...	[more]
XP_022941521.1	6.4e-225	84.73	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53...	[more]
KAG6607949.1	3.2e-224	84.52	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
KAG7037464.1	4.1e-224	84.30	putative pentatricopeptide repeat-containing protein, partial [Cucurbita argyros...	[more]
XP_023523314.1	4.6e-223	83.87	putative pentatricopeptide repeat-containing protein At1g53330 [Cucurbita pepo s...	[more]

BLAST of Sed0018684 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9MAG8	3.1e-142	55.21	Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis th...	[more]
Q9LQQ1	1.7e-50	33.33	Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidop...	[more]
Q3E9F0	1.1e-49	28.69	Pentatricopeptide repeat-containing protein At5g18475 OS=Arabidopsis thaliana OX...	[more]
Q9FIX3	5.9e-48	30.70	Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana OX...	[more]
O49436	3.2e-46	31.89	Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana OX...	[more]

BLAST of Sed0018684 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J467	1.6e-226	84.52	putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucurbita maxi...	[more]
A0A6J1FLC2	3.1e-225	84.73	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g53...	[more]
A0A6J1BRW9	2.5e-214	80.43	putative pentatricopeptide repeat-containing protein At1g53330 OS=Momordica char...	[more]
A0A5A7VBA5	3.0e-212	80.43	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3BT71	3.0e-212	80.43	putative pentatricopeptide repeat-containing protein At1g53330 OS=Cucumis melo O...	[more]

BLAST of Sed0018684 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G53330.1	2.2e-143	55.21	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G07740.1	1.2e-51	33.33	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G18475.1	7.6e-51	28.69	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G39710.1	4.2e-49	30.70	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G12300.1	2.3e-47	32.99	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 332..380 e-value: 4.5E-18 score: 65.2 coord: 156..204 e-value: 1.3E-16 score: 60.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 231..260 e-value: 0.31 score: 11.4 coord: 128..147 e-value: 1.4 score: 9.3
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 293..326 e-value: 1.1E-14 score: 53.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 335..369 e-value: 4.4E-10 score: 37.1 coord: 194..229 e-value: 2.6E-5 score: 22.1 coord: 266..299 e-value: 1.2E-7 score: 29.4 coord: 231..263 e-value: 0.0025 score: 15.9 coord: 370..402 e-value: 6.9E-5 score: 20.8 coord: 159..193 e-value: 8.8E-10 score: 36.2 coord: 300..334 e-value: 1.2E-13 score: 48.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 368..402 score: 11.103854
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 333..367 score: 13.000159
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 157..191 score: 12.813817
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 228..262 score: 9.086975
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 298..332 score: 14.863581
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 263..297 score: 11.882107
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 192..222 score: 8.966401
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 256..323 e-value: 1.8E-20 score: 75.3 coord: 8..152 e-value: 5.8E-11 score: 44.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 324..459 e-value: 1.2E-29 score: 105.6 coord: 153..255 e-value: 2.7E-26 score: 94.7
None	No IPR available	PANTHER	PTHR47933:SF24	OS05G0207200 PROTEIN	coord: 1..462
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 1..462

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018684.1	Sed0018684.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010154	fruit development
molecular_function	GO:0005515	protein binding