Sed0018655 (gene) Chayote v1

Overview
NameSed0018655
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG05: 17990812 .. 17993166 (-)
RNA-Seq ExpressionSed0018655
SyntenySed0018655
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAATTGCTCCAGCATTTAAAATTAAAGATTACACAGTGTGCCTCTTCCTTTTTTGTCATTATTTAGATGTCTTACCAATTGTTTGAAAAAGAAATTAACTGAGACTAGGGATAGTTTATAATTCAACTTCAACCACTTGTGCTGAGACTTGTATGAACCAAGTTCAAAAAGTCTCTTGAATGATATGTATAATCTTGTCCAGAAACTCACAGACTTAAAATAAAAATGTGTTAAATGCTATGAACTAAATAGTTGAGCTTTTTCTGTTCCCATAAATAGTATGTTACAATTATTAGTAGCATATAGGCATCCCTCAAGTTTGTTGAAAAATTTCATACAATTTTCAGGCGGAGTGGGAGTTTTCTGAACAGTCAACATCGAAGTTATCAAGAGTGAGGTTAATTAAATGCTTTGCCCTTACCTCTTTGTCCTTATTGCATTTTCTTATTGCTGGTTAATTAAATACTAAATGCTGTCAATTGTTCATAGGTAGGTCAATGCCAAGAGGCATGTAATGAAGGAGAAAAACCGAAGGATCAAGGATCTGACCTACATGGTACTTTATCTTGAAAATAATTATTTCTGAACTTATTCCTCATTATTAATTGTTCAAGTTTTCTTTTACAAGATAAACTTAACTAATTTCATGTAAGTTTTATCTTTTAAGTTGTTTTAAGTTTTTAATTTTAAATTTTGTAAGTTATAGAAATTAAATAGCCTCCATATTTTGTATCTATTAAAAGGTAAACTTCCTTAAGAAGTTTGTATCACCAATTTCTCCATTTGTAATAAACACAGATTCATTTGTTTCACTCTCACATTTTCTCTTGATTTGACTTTTGCTTCGGCAATATTCATTTCATATTTCATTTTTTCCCAACAAATTCCAAATTCATTTTTAAATGTGTTTGGATTTTCTTTAAGGAACCATATTTTGAAATTCATTTGTACCTAGAATAATAACTTTGCCTGGATGCTATCACTAGGATAACATATAGACGGTCTTAAATTGCTTATATGAAGTTATCCTTTTGACCTTTCTAGTTGAGTAGATAGTACTTGTTCTTGTTCAATGATCTAGAATAGGAAAGCTTTCTATTTTTCCTAGTATTTTAAATAGAAGTTCTGCTAATATCATATTTTTTTGGATGATTGGTAGCAGATGCATTCTGGACGAAGCTAAAGTTGGCAGCTGAACAGAAGGTATGTGCTTTTATAGAAATATGTTGATCATTTGGAACCTAAATGAAATTTTTTTAAAAGTACGATGATCATTTGGTACCTAAATGGAGATTTTAAAAAGTATGAGCTTTTATTTCTTTTTTAATTAGTCGTGCCGAAAATCCTTCTCCGGCGCCGGTGATGATCATTTGTACTCTTATTGCTTTTGTTTCCATAGGTTTCCCTGGTATCATTTTATTATATCAATCCAATCAAAAATATATATTTTGCGTGGTATTGAATTCTAAACTATTTATCTTCTCCTTAGAGATGTCCACGGGGCGGAGCTGGGGAACAACTTTCCCGTCCTTGTCCTCGTCACCAAAATCGATTTCCGTTTCCGCGAAATTCACTGTGGGGATCGCGACAAGGATTCCCGTGGGGAATTTTTTTCCGTTCCTTTTTTTTTTCTTGTTTCATTTTTTATATATATATATTTTTTAGAAAATACCTATCAAGTTTCTTAATTATTAAGGAAAAATATTTCTTTGAATGCCTAATTTCATAAACATATCTTTTTAATCCAAAATTTAGAGTAAAATGAGGGAAAAAATATTTTTTAAAAAATAATAAAAAATTGTAAACGGGGATAGGGAATACATTTTCCGTCCTCGGCCCCGTTTAGCTAACCGTGATTTTTCTTTCTCCGTCTCCAGTCCCGTTCCCAGCTTAAATAAGGATTCCCCACAGGAAAAAATTGACCTCTCTATTTCCACTTTCTTTGAGGTGCTGAAACATTCACGTGCTTTCAGATTTTGTTAAATCCTTGAATGCAAATGAACTTCACTTTAAATTAAACTCCAATATTTGGATTTTCTCAACACAATTCATTATTATTTAGTTTGAATGTGTGAAGAACAATGTTTATATTTGTGTCTAACAGCTTGTTTTCTTATTCATTCCACACAGTGGGCAAAATTGAAGCAGAGAGATTCTGTAACTCATTTCAACAGTTACACAATAAACTTGTACGTCATTCTGAAGATGTCATGCAATGATCAGTCATGTTTGTTATTTCTCTAATGACATTAAAACGAAAATCATATAATCAATTTGACTGCAGGTTAATGAAGAACTGAGTTCGGATTGCTGCCCGGAGCTTTCTGGAGTCATTTAGTTCCACAGAATAG

mRNA sequence

ATGTTAATTGCTCCAGCATTTAAAATTAAAGATTACACAGTGTGCCTCTTCCTTTTTTGTCATTATTTAGATGTCTTACCAATTGCGGAGTGGGAGTTTTCTGAACAGTCAACATCGAAGTTATCAAGAGTAGGTCAATGCCAAGAGGCATGTAATGAAGGAGAAAAACCGAAGGATCAAGGATCTGACCTACATGATGCATTCTGGACGAAGCTAAAGTTGGCAGCTGAACAGAAGGTATTGGGCAAAATTGAAGCAGAGAGATTCTGTAACTCATTTCAACAGTTACACAATAAACTTGTACTTCGGATTGCTGCCCGGAGCTTTCTGGAGTCATTTAGTTCCACAGAATAG

Coding sequence (CDS)

ATGTTAATTGCTCCAGCATTTAAAATTAAAGATTACACAGTGTGCCTCTTCCTTTTTTGTCATTATTTAGATGTCTTACCAATTGCGGAGTGGGAGTTTTCTGAACAGTCAACATCGAAGTTATCAAGAGTAGGTCAATGCCAAGAGGCATGTAATGAAGGAGAAAAACCGAAGGATCAAGGATCTGACCTACATGATGCATTCTGGACGAAGCTAAAGTTGGCAGCTGAACAGAAGGTATTGGGCAAAATTGAAGCAGAGAGATTCTGTAACTCATTTCAACAGTTACACAATAAACTTGTACTTCGGATTGCTGCCCGGAGCTTTCTGGAGTCATTTAGTTCCACAGAATAG

Protein sequence

MLIAPAFKIKDYTVCLFLFCHYLDVLPIAEWEFSEQSTSKLSRVGQCQEACNEGEKPKDQGSDLHDAFWTKLKLAAEQKVLGKIEAERFCNSFQQLHNKLVLRIAARSFLESFSSTE
Homology
BLAST of Sed0018655 vs. NCBI nr
Match: XP_023512799.1 (uncharacterized protein LOC111777433 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 114.8 bits (286), Expect = 5.1e-22
Identity = 71/98 (72.45%), Postives = 76/98 (77.55%), Query Frame = 0

Query: 29  AEWEFSEQSTSKLSR--VGQCQEACNE-GEKPKDQGSDLHDAFWTKLKLAAEQKVLGKIE 88
           AE E S QSTSK S+  + + QEA NE GEK KDQGSDLHDAFW KLKLAAEQKV GK+E
Sbjct: 23  AESELSRQSTSKSSKSELSEWQEAWNEDGEKSKDQGSDLHDAFWRKLKLAAEQKV-GKLE 82

Query: 89  AERFCNSFQQLHNKLV----LRIAARSFLESF--SSTE 118
           AERFCNSFQQ+HNKLV       AARSFLESF  SSTE
Sbjct: 83  AERFCNSFQQIHNKLVNEELSSDAARSFLESFSCSSTE 119

BLAST of Sed0018655 vs. NCBI nr
Match: XP_038900414.1 (uncharacterized protein LOC120087643 [Benincasa hispida])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 71/114 (62.28%), Postives = 80/114 (70.18%), Query Frame = 0

Query: 17  FLFCHYLDVLPI-------AEWEFSEQSTSK--LSRVGQCQEACNE-GEKPKDQGSDLHD 76
           F F   L + P+       AE E S QSTSK   S + + QEA NE G+KPK QGSDLHD
Sbjct: 4   FEFHRLLQLFPVVRSRDYHAETELSRQSTSKSFKSELNEWQEAWNEDGQKPKVQGSDLHD 63

Query: 77  AFWTKLKLAAEQKVLGKIEAERFCNSFQQLHNKLVLR----IAARSFLESFSST 117
           AFW KLKLAAEQKV GK+EAERFCNSFQQ+HNKLV       AARSFL+SFSS+
Sbjct: 64  AFWKKLKLAAEQKV-GKVEAERFCNSFQQIHNKLVNEELSLDAARSFLDSFSSS 116

BLAST of Sed0018655 vs. NCBI nr
Match: XP_022944774.1 (uncharacterized protein LOC111449126 isoform X1 [Cucurbita moschata] >KAG7010307.1 hypothetical protein SDJN02_27100 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-21
Identity = 70/98 (71.43%), Postives = 75/98 (76.53%), Query Frame = 0

Query: 29  AEWEFSEQSTSKLSR--VGQCQEACNE-GEKPKDQGSDLHDAFWTKLKLAAEQKVLGKIE 88
           AE E S QSTSK S+  + + QEA NE GEK KDQGSDLHDAFW KLK AAEQKV GK+E
Sbjct: 23  AESELSRQSTSKSSKSELSEWQEAWNEDGEKSKDQGSDLHDAFWKKLKFAAEQKV-GKLE 82

Query: 89  AERFCNSFQQLHNKLV----LRIAARSFLESF--SSTE 118
           AERFCNSFQQ+HNKLV       AARSFLESF  SSTE
Sbjct: 83  AERFCNSFQQIHNKLVNEELSSDAARSFLESFSCSSTE 119

BLAST of Sed0018655 vs. NCBI nr
Match: XP_023512800.1 (uncharacterized protein LOC111777433 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 70/96 (72.92%), Postives = 74/96 (77.08%), Query Frame = 0

Query: 29  AEWEFSEQSTSKLSRVGQCQEACNE-GEKPKDQGSDLHDAFWTKLKLAAEQKVLGKIEAE 88
           AE E S QSTSK S+    +EA NE GEK KDQGSDLHDAFW KLKLAAEQKV GK+EAE
Sbjct: 23  AESELSRQSTSKSSK---SEEAWNEDGEKSKDQGSDLHDAFWRKLKLAAEQKV-GKLEAE 82

Query: 89  RFCNSFQQLHNKLV----LRIAARSFLESF--SSTE 118
           RFCNSFQQ+HNKLV       AARSFLESF  SSTE
Sbjct: 83  RFCNSFQQIHNKLVNEELSSDAARSFLESFSCSSTE 114

BLAST of Sed0018655 vs. NCBI nr
Match: XP_008449631.1 (PREDICTED: uncharacterized protein LOC103491458 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 3.3e-21
Identity = 74/117 (63.25%), Postives = 81/117 (69.23%), Query Frame = 0

Query: 17  FLFCHYLDVLPI-------AEWEFSEQSTSK--LSRVGQCQEACNE-GEKPKDQGSDLHD 76
           F F   L + P+       AE E S QSTSK   S + + QEA NE GEKPKDQGS LHD
Sbjct: 4   FEFHRLLQLFPVVRSRDYHAETELSRQSTSKSPKSELNEWQEAWNEDGEKPKDQGSPLHD 63

Query: 77  AFWTKLKLAAEQKVLGKIEAERFCNSFQQLHNKLVLR----IAARSFLESF--SSTE 118
           AFWTKLKLAAEQKV GK+EAERF NSFQQ+HNKLV       AARSFL+SF  SSTE
Sbjct: 64  AFWTKLKLAAEQKV-GKVEAERFFNSFQQIHNKLVNEELSLDAARSFLDSFSCSSTE 119

BLAST of Sed0018655 vs. ExPASy TrEMBL
Match: A0A6J1FZ15 (uncharacterized protein LOC111449126 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111449126 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 7.2e-22
Identity = 70/98 (71.43%), Postives = 75/98 (76.53%), Query Frame = 0

Query: 29  AEWEFSEQSTSKLSR--VGQCQEACNE-GEKPKDQGSDLHDAFWTKLKLAAEQKVLGKIE 88
           AE E S QSTSK S+  + + QEA NE GEK KDQGSDLHDAFW KLK AAEQKV GK+E
Sbjct: 23  AESELSRQSTSKSSKSELSEWQEAWNEDGEKSKDQGSDLHDAFWKKLKFAAEQKV-GKLE 82

Query: 89  AERFCNSFQQLHNKLV----LRIAARSFLESF--SSTE 118
           AERFCNSFQQ+HNKLV       AARSFLESF  SSTE
Sbjct: 83  AERFCNSFQQIHNKLVNEELSSDAARSFLESFSCSSTE 119

BLAST of Sed0018655 vs. ExPASy TrEMBL
Match: A0A1S3BLU6 (uncharacterized protein LOC103491458 OS=Cucumis melo OX=3656 GN=LOC103491458 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.6e-21
Identity = 74/117 (63.25%), Postives = 81/117 (69.23%), Query Frame = 0

Query: 17  FLFCHYLDVLPI-------AEWEFSEQSTSK--LSRVGQCQEACNE-GEKPKDQGSDLHD 76
           F F   L + P+       AE E S QSTSK   S + + QEA NE GEKPKDQGS LHD
Sbjct: 4   FEFHRLLQLFPVVRSRDYHAETELSRQSTSKSPKSELNEWQEAWNEDGEKPKDQGSPLHD 63

Query: 77  AFWTKLKLAAEQKVLGKIEAERFCNSFQQLHNKLVLR----IAARSFLESF--SSTE 118
           AFWTKLKLAAEQKV GK+EAERF NSFQQ+HNKLV       AARSFL+SF  SSTE
Sbjct: 64  AFWTKLKLAAEQKV-GKVEAERFFNSFQQIHNKLVNEELSLDAARSFLDSFSCSSTE 119

BLAST of Sed0018655 vs. ExPASy TrEMBL
Match: A0A6J1FZ17 (uncharacterized protein LOC111449126 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111449126 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.6e-21
Identity = 69/96 (71.88%), Postives = 73/96 (76.04%), Query Frame = 0

Query: 29  AEWEFSEQSTSKLSRVGQCQEACNE-GEKPKDQGSDLHDAFWTKLKLAAEQKVLGKIEAE 88
           AE E S QSTSK S+    +EA NE GEK KDQGSDLHDAFW KLK AAEQKV GK+EAE
Sbjct: 23  AESELSRQSTSKSSK---SEEAWNEDGEKSKDQGSDLHDAFWKKLKFAAEQKV-GKLEAE 82

Query: 89  RFCNSFQQLHNKLV----LRIAARSFLESF--SSTE 118
           RFCNSFQQ+HNKLV       AARSFLESF  SSTE
Sbjct: 83  RFCNSFQQIHNKLVNEELSSDAARSFLESFSCSSTE 114

BLAST of Sed0018655 vs. ExPASy TrEMBL
Match: A0A0A0KGZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429090 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-20
Identity = 72/117 (61.54%), Postives = 79/117 (67.52%), Query Frame = 0

Query: 17  FLFCHYLDVLPI-------AEWEFSEQSTSK--LSRVGQCQEACNE-GEKPKDQGSDLHD 76
           F F   L + P+       AE E S QSTSK   S + + QE  NE GEKPKDQGS LH 
Sbjct: 4   FEFHRLLQLFPVVRSRDYHAETELSRQSTSKSPKSEINERQEPWNEDGEKPKDQGSALHH 63

Query: 77  AFWTKLKLAAEQKVLGKIEAERFCNSFQQLHNKLVLR----IAARSFLESF--SSTE 118
           AFWTKLKLAAEQKV GK+EAERF NSFQQ+HNKLV       AARSFL+SF  SSTE
Sbjct: 64  AFWTKLKLAAEQKV-GKVEAERFFNSFQQIHNKLVNEELSLDAARSFLDSFSCSSTE 119

BLAST of Sed0018655 vs. ExPASy TrEMBL
Match: A0A6J1JEA9 (uncharacterized protein LOC111483657 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483657 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 5.2e-20
Identity = 67/98 (68.37%), Postives = 74/98 (75.51%), Query Frame = 0

Query: 29  AEWEFSEQSTSKLSR--VGQCQEACNE-GEKPKDQGSDLHDAFWTKLKLAAEQKVLGKIE 88
           AE E S QSTSK S+  + + QEA  E G+K KDQGSDLHDAFW KL+LAAEQKV GK+E
Sbjct: 23  AESELSRQSTSKSSKSELSEWQEAWKEDGKKSKDQGSDLHDAFWKKLQLAAEQKV-GKLE 82

Query: 89  AERFCNSFQQLHNKLV----LRIAARSFLESF--SSTE 118
           AERFCNSFQQ+HNKLV       AARSFLE F  SSTE
Sbjct: 83  AERFCNSFQQIHNKLVNEELSSDAARSFLELFSCSSTE 119

BLAST of Sed0018655 vs. TAIR 10
Match: AT5G12240.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages. )

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07
Identity = 40/95 (42.11%), Postives = 52/95 (54.74%), Query Frame = 0

Query: 19  FCHYLDVLPI-------AEWEFSEQSTSKL---SRVGQCQEACNEGEKPKDQG--SDLHD 78
           F   LD+ P+       AE + S+QSTS+      V +  +A    E PKD        D
Sbjct: 6   FRSLLDLFPVVRSRDHRAELDSSKQSTSQSVVDREVSEWHDAPTVAE-PKDLQYLKTDQD 65

Query: 79  AFWTKLKLAAEQKVLGKIEAERFCNSFQQLHNKLV 102
            FW  LK AAE+KV G +EAERFC +F++LH KLV
Sbjct: 66  KFWENLKAAAEKKV-GGVEAERFCKAFEKLHKKLV 98

BLAST of Sed0018655 vs. TAIR 10
Match: AT5G12240.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 7.2e-06
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 0

Query: 68  FWTKLKLAAEQKVLGKIEAERFCNSFQQLHNKLV 102
           FW  LK AAE+KV G +EAERFC +F++LH KLV
Sbjct: 120 FWENLKAAAEKKV-GGVEAERFCKAFEKLHKKLV 152

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023512799.15.1e-2272.45uncharacterized protein LOC111777433 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_038900414.11.1e-2162.28uncharacterized protein LOC120087643 [Benincasa hispida][more]
XP_022944774.11.5e-2171.43uncharacterized protein LOC111449126 isoform X1 [Cucurbita moschata] >KAG7010307... [more]
XP_023512800.12.5e-2172.92uncharacterized protein LOC111777433 isoform X2 [Cucurbita pepo subsp. pepo][more]
XP_008449631.13.3e-2163.25PREDICTED: uncharacterized protein LOC103491458 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FZ157.2e-2271.43uncharacterized protein LOC111449126 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A1S3BLU61.6e-2163.25uncharacterized protein LOC103491458 OS=Cucumis melo OX=3656 GN=LOC103491458 PE=... [more]
A0A6J1FZ173.6e-2171.88uncharacterized protein LOC111449126 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A0A0KGZ64.0e-2061.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G429090 PE=4 SV=1[more]
A0A6J1JEA95.2e-2068.37uncharacterized protein LOC111483657 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
AT5G12240.21.0e-0742.11unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G12240.17.2e-0664.71unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0... [more]
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35312OS07G0641800 PROTEINcoord: 8..115
NoneNo IPR availablePANTHERPTHR35312:SF1OS07G0641800 PROTEINcoord: 8..115

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0018655.1Sed0018655.1mRNA