Sed0018645 (gene) Chayote v1

Overview


Name	Sed0018645
Type	gene
Organism	Sechium edule (Chayote v1)
Description	F-box protein SNE-like
Location	LG05: 40955283 .. 40956281 (+)
RNA-Seq Expression	Sed0018645
Synteny	Sed0018645

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGATTTGGAGAATCCATCTCTCTTTGAAAGAGTGGTTCCCATGCCCAAAGTCTTGGAATATGCACACACAAACACTCCCTAAAATCAACTACAAATTATAAAAAGAAAGCAAAGAAAGAGAAAGTTAAACAGCATTGGTTTGAGTTCTTATTTGGTTTGGATCTTCTTCCTTGGCCCCATCCCCTCCCTCCTCGATACCCTCTCTCAATCCTTCTCACAGACATTTTCACAAACACGCGGACTTCGAGACGCACAGCAACACAAATCCTATCTTACACTTTTTCTCTATATACCACAGAGGCAGAGCATTTCGATTATAATTTCCACCTACCAAATCCCTAATCGTTTCATTTCTAGGGCAAAAACATAAACAATGCTGAAGAAGAATCACGTACCCGATCCGAACGAGAAGCGGCGGAAGATCTCAATCAACGACAATCTCGACATTCTGATCGAGATCCTAAAGCGACTGGACGGACCGTCGCTGGGCGTCGCGGCCTGCGTTTGCCGGCTCTGGTGCAGGATCGGGCGGAGCGAGTCGGTGTGGGAAGAGGTGTGCTTCCGGCACGTGACGTCGCCGCTGCCGTCGTCGGTGAGATCGGTGGTGGCCGCGTTGGGAGGGTACAAGCGGCTGTATATGGTGAGCATTCGGCCGGTGCTGAGTCGGCTCCGGTGCTCGGAGGTGGTGCGGCGGCGGGTTTGGACTCAGGATGAGGTTCAGCTTTCTCTGTCGCTGTTCTGTGTGGATTATTACGAGCGCCTCGCTGGGACTGGCAGAGATGCGTCCGCATTGTCGCTCATGTTCCTCTGCAACACTGTGAACGTCTGATTTGATCTCCTTCGTTTTTTTTATACTTTCTCCACCGTCGGATTTGTAGACCAGAAATCAAGCAAGGTCTGGTCATTTTAGTCAACGGGATTAAATTTGCCTGGTATGAAGATGAATATTATGATGATTGTTTCAATTACACGACGATTCTATTTTTATGAAAAATAAC

mRNA sequence

GTGATTTGGAGAATCCATCTCTCTTTGAAAGAGTGGTTCCCATGCCCAAAGTCTTGGAATATGCACACACAAACACTCCCTAAAATCAACTACAAATTATAAAAAGAAAGCAAAGAAAGAGAAAGTTAAACAGCATTGGTTTGAGTTCTTATTTGGTTTGGATCTTCTTCCTTGGCCCCATCCCCTCCCTCCTCGATACCCTCTCTCAATCCTTCTCACAGACATTTTCACAAACACGCGGACTTCGAGACGCACAGCAACACAAATCCTATCTTACACTTTTTCTCTATATACCACAGAGGCAGAGCATTTCGATTATAATTTCCACCTACCAAATCCCTAATCGTTTCATTTCTAGGGCAAAAACATAAACAATGCTGAAGAAGAATCACGTACCCGATCCGAACGAGAAGCGGCGGAAGATCTCAATCAACGACAATCTCGACATTCTGATCGAGATCCTAAAGCGACTGGACGGACCGTCGCTGGGCGTCGCGGCCTGCGTTTGCCGGCTCTGGTGCAGGATCGGGCGGAGCGAGTCGGTGTGGGAAGAGGTGTGCTTCCGGCACGTGACGTCGCCGCTGCCGTCGTCGGTGAGATCGGTGGTGGCCGCGTTGGGAGGGTACAAGCGGCTGTATATGGTGAGCATTCGGCCGGTGCTGAGTCGGCTCCGGTGCTCGGAGGTGGTGCGGCGGCGGGTTTGGACTCAGGATGAGGTTCAGCTTTCTCTGTCGCTGTTCTGTGTGGATTATTACGAGCGCCTCGCTGGGACTGGCAGAGATGCGTCCGCATTGTCGCTCATGTTCCTCTGCAACACTGTGAACGTCTGATTTGATCTCCTTCGTTTTTTTTATACTTTCTCCACCGTCGGATTTGTAGACCAGAAATCAAGCAAGGTCTGGTCATTTTAGTCAACGGGATTAAATTTGCCTGGTATGAAGATGAATATTATGATGATTGTTTCAATTACACGACGATTCTATTTTTATGAAAAATAAC

Coding sequence (CDS)

ATGCTGAAGAAGAATCACGTACCCGATCCGAACGAGAAGCGGCGGAAGATCTCAATCAACGACAATCTCGACATTCTGATCGAGATCCTAAAGCGACTGGACGGACCGTCGCTGGGCGTCGCGGCCTGCGTTTGCCGGCTCTGGTGCAGGATCGGGCGGAGCGAGTCGGTGTGGGAAGAGGTGTGCTTCCGGCACGTGACGTCGCCGCTGCCGTCGTCGGTGAGATCGGTGGTGGCCGCGTTGGGAGGGTACAAGCGGCTGTATATGGTGAGCATTCGGCCGGTGCTGAGTCGGCTCCGGTGCTCGGAGGTGGTGCGGCGGCGGGTTTGGACTCAGGATGAGGTTCAGCTTTCTCTGTCGCTGTTCTGTGTGGATTATTACGAGCGCCTCGCTGGGACTGGCAGAGATGCGTCCGCATTGTCGCTCATGTTCCTCTGCAACACTGTGAACGTCTGA

Protein sequence

MLKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGRDASALSLMFLCNTVNV

Homology

[Close]

BLAST of Sed0018645 vs. NCBI nr
Match: XP_038902594.1 (F-box protein SNE [Benincasa hispida])

HSP 1 Score: 265.4 bits (677), Expect = 3.0e-67
Identity = 132/153 (86.27%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 2   LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEV 61
           ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLGVA CVCRLWC I RSESVWE+V
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 62  CFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSLSL 121
           CFRHVTSPLPSSV+SVVAALGGYKRLYMVSIRPVLSRL  S++V RRVWTQDEVQLSLSL
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLV-RRVWTQDEVQLSLSL 120

Query: 122 FCVDYYERLAGTGR---DASALSLMFLCNTVNV 152
           FCVDYYERL G+GR   DASALSLMFLCNTVNV
Sbjct: 121 FCVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of Sed0018645 vs. NCBI nr
Match: XP_022947535.1 (F-box protein SNE-like [Cucurbita moschata] >XP_022971122.1 F-box protein SNE-like [Cucurbita maxima] >XP_023534232.1 F-box protein SNE-like [Cucurbita pepo subsp. pepo] >KAG6604912.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026993.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.2 bits (674), Expect = 6.7e-67
Identity = 133/153 (86.93%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 2   LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEV 61
           ++KNH+P+ NEKRRK  INDNLDILIEILKRLDGPSLGVAACVCRLWC I R+ESVWE V
Sbjct: 1   MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHV 60

Query: 62  CFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSLSL 121
           CFRHVTSPLPSSV+SVVAALGGYKRLYMVSIRPVLSRL  SEVV RRVWTQDEVQLSLSL
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVV-RRVWTQDEVQLSLSL 120

Query: 122 FCVDYYERLAGTGR---DASALSLMFLCNTVNV 152
           FCVDYYERL G+GR   DASALSLMFLCNTVNV
Sbjct: 121 FCVDYYERLTGSGRLSGDASALSLMFLCNTVNV 152

[Close]

BLAST of Sed0018645 vs. NCBI nr
Match: XP_004140002.1 (F-box protein SNE [Cucumis sativus] >XP_031743985.1 F-box protein SNE [Cucumis sativus] >KGN46603.1 hypothetical protein Csa_005230 [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 9.7e-66
Identity = 129/153 (84.31%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 2   LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEV 61
           ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLGVA CVCRLWC I RSESVWE+V
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 62  CFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSLSL 121
           CFRHV SPLPSSV++VVAALGGYKRLYMVSIRPVLSRL  S++V RRVWTQDEVQLSLSL
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLV-RRVWTQDEVQLSLSL 120

Query: 122 FCVDYYERLAGTGR---DASALSLMFLCNTVNV 152
           FCVDYYERL G+GR   +ASALSLMFLCNTVNV
Sbjct: 121 FCVDYYERLTGSGRIGGEASALSLMFLCNTVNV 152

[Close]

BLAST of Sed0018645 vs. NCBI nr
Match: XP_022985800.1 (F-box protein SNE-like [Cucurbita maxima])

HSP 1 Score: 258.8 bits (660), Expect = 2.8e-65
Identity = 128/154 (83.12%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 2   LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEV 61
           ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLGVA CVCRLWC I RSESVWE+V
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 62  CFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSLSL 121
           CFRHVTSPLP+SV+SVV ALGGYKRLYMVSIRPVLSRL  S+++ RRVWTQ+EVQLSLSL
Sbjct: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLM-RRVWTQNEVQLSLSL 120

Query: 122 FCVDYYERLAGTGR----DASALSLMFLCNTVNV 152
           FCVDYYERL G GR    DASALSLMFLCNTVNV
Sbjct: 121 FCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV 153

[Close]

BLAST of Sed0018645 vs. NCBI nr
Match: XP_022943904.1 (F-box protein SNE-like [Cucurbita moschata] >KAG7010780.1 F-box protein SNE, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 258.1 bits (658), Expect = 4.8e-65
Identity = 127/155 (81.94%), Postives = 139/155 (89.68%), Query Frame = 0


Query: 2   LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEV 61
           ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLG+A CVCRLWC I RSESVWE+V
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQV 60

Query: 62  CFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSLSL 121
           CFRHVTSPLP+SV+SVV ALGGYKRLYMVSIRPVLSRL  S+++ RRVWTQ+EVQLSLSL
Sbjct: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLM-RRVWTQNEVQLSLSL 120

Query: 122 FCVDYYERLAGTGR-----DASALSLMFLCNTVNV 152
           FCVDYYERL G GR     DASALSLMFLCNTVNV
Sbjct: 121 FCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV 154

[Close]

BLAST of Sed0018645 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.2e-35
Identity = 86/155 (55.48%), Postives = 110/155 (70.97%), Query Frame = 0


Query: 7   VPDPNEKRRKI------SINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEE 66
           V   N KR+++      SIND+ D+L+EIL+RLDG SL  AACVCRLW  + R++S+WEE
Sbjct: 10  VEKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEE 69

Query: 67  VCFRHVTSPLPS-SVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSL 126
           +CFR V SP PS S+RSVV+ALGGY+ LY + IRPVL+RL       + +WT+D++QLSL
Sbjct: 70  LCFRQV-SPRPSLSLRSVVSALGGYRCLYFLCIRPVLARL------PKLLWTRDQLQLSL 129

Query: 127 SLFCVDYYERL---AGTGRDASALSLMFLCNTVNV 152
           SL+CV YYERL   A  G DA   SL+FL   VNV
Sbjct: 130 SLYCVHYYERLYVGAWLG-DAPPSSLIFLRKPVNV 156

[Close]

BLAST of Sed0018645 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.9e-14
Identity = 42/118 (35.59%), Postives = 75/118 (63.56%), Query Frame = 0


Query: 22  NLD--ILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTS--PLPSSVRSV 81
           NLD  ++ E+LK +D  +L +++CV ++W +  + E +WE +C RH T+     + +RSV
Sbjct: 34  NLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSV 93

Query: 82  VAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR 136
           V ALGG++RL+ + + P+      S+   R  + +DE++L+LSL  + YYE+++ T R
Sbjct: 94  VLALGGFRRLHSLYLWPL------SKPNPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of Sed0018645 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.8e-12
Identity = 42/122 (34.43%), Postives = 70/122 (57.38%), Query Frame = 0


Query: 24  DILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTSP--LPSSVRSVVAAL 83
           D++ E+L+R +  +L  AACV R W ++   E +WE  C R   +       +R+VV +L
Sbjct: 79  DLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAVVLSL 138

Query: 84  GGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQ-------DEVQLSLSLFCVDYYERLAGTG 137
           GG++RL+ V IRP+  + R + V R++   Q       D+VQLSLSLF + +++ +    
Sbjct: 139 GGFRRLHAVYIRPL--QWRGAGVPRQQGRRQPPVRLGRDQVQLSLSLFSIGFFQNMPCPK 198

[Close]

BLAST of Sed0018645 vs. ExPASy TrEMBL
Match: A0A6J1I140 (F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111469889 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.3e-67
Identity = 133/153 (86.93%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 2   LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEV 61
           ++KNH+P+ NEKRRK  INDNLDILIEILKRLDGPSLGVAACVCRLWC I R+ESVWE V
Sbjct: 1   MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHV 60

Query: 62  CFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSLSL 121
           CFRHVTSPLPSSV+SVVAALGGYKRLYMVSIRPVLSRL  SEVV RRVWTQDEVQLSLSL
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVV-RRVWTQDEVQLSLSL 120

Query: 122 FCVDYYERLAGTGR---DASALSLMFLCNTVNV 152
           FCVDYYERL G+GR   DASALSLMFLCNTVNV
Sbjct: 121 FCVDYYERLTGSGRLSGDASALSLMFLCNTVNV 152

[Close]

BLAST of Sed0018645 vs. ExPASy TrEMBL
Match: A0A6J1G764 (F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111451371 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.3e-67
Identity = 133/153 (86.93%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 2   LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEV 61
           ++KNH+P+ NEKRRK  INDNLDILIEILKRLDGPSLGVAACVCRLWC I R+ESVWE V
Sbjct: 1   MQKNHIPEANEKRRKFLINDNLDILIEILKRLDGPSLGVAACVCRLWCTIARNESVWEHV 60

Query: 62  CFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSLSL 121
           CFRHVTSPLPSSV+SVVAALGGYKRLYMVSIRPVLSRL  SEVV RRVWTQDEVQLSLSL
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSEVV-RRVWTQDEVQLSLSL 120

Query: 122 FCVDYYERLAGTGR---DASALSLMFLCNTVNV 152
           FCVDYYERL G+GR   DASALSLMFLCNTVNV
Sbjct: 121 FCVDYYERLTGSGRLSGDASALSLMFLCNTVNV 152

[Close]

BLAST of Sed0018645 vs. ExPASy TrEMBL
Match: A0A0A0KAT5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G111930 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.7e-66
Identity = 129/153 (84.31%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 2   LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEV 61
           ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLGVA CVCRLWC I RSESVWE+V
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 62  CFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSLSL 121
           CFRHV SPLPSSV++VVAALGGYKRLYMVSIRPVLSRL  S++V RRVWTQDEVQLSLSL
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLV-RRVWTQDEVQLSLSL 120

Query: 122 FCVDYYERLAGTGR---DASALSLMFLCNTVNV 152
           FCVDYYERL G+GR   +ASALSLMFLCNTVNV
Sbjct: 121 FCVDYYERLTGSGRIGGEASALSLMFLCNTVNV 152

[Close]

BLAST of Sed0018645 vs. ExPASy TrEMBL
Match: A0A6J1JCA9 (F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111483741 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.4e-65
Identity = 128/154 (83.12%), Postives = 139/154 (90.26%), Query Frame = 0


Query: 2   LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEV 61
           ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLGVA CVCRLWC I RSESVWE+V
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 62  CFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSLSL 121
           CFRHVTSPLP+SV+SVV ALGGYKRLYMVSIRPVLSRL  S+++ RRVWTQ+EVQLSLSL
Sbjct: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLM-RRVWTQNEVQLSLSL 120

Query: 122 FCVDYYERLAGTGR----DASALSLMFLCNTVNV 152
           FCVDYYERL G GR    DASALSLMFLCNTVNV
Sbjct: 121 FCVDYYERLTGNGRLGGGDASALSLMFLCNTVNV 153

[Close]

BLAST of Sed0018645 vs. ExPASy TrEMBL
Match: A0A6J1FVJ9 (F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111448489 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.3e-65
Identity = 127/155 (81.94%), Postives = 139/155 (89.68%), Query Frame = 0


Query: 2   LKKNHVPDPNEKRRKISINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEV 61
           ++KNH+P+PNEKRRK  INDNLDILIEILKRLDGPSLG+A CVCRLWC I RSESVWE+V
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQV 60

Query: 62  CFRHVTSPLPSSVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSLSL 121
           CFRHVTSPLP+SV+SVV ALGGYKRLYMVSIRPVLSRL  S+++ RRVWTQ+EVQLSLSL
Sbjct: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLM-RRVWTQNEVQLSLSL 120

Query: 122 FCVDYYERLAGTGR-----DASALSLMFLCNTVNV 152
           FCVDYYERL G GR     DASALSLMFLCNTVNV
Sbjct: 121 FCVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV 154

[Close]

BLAST of Sed0018645 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 149.4 bits (376), Expect = 2.3e-36
Identity = 86/155 (55.48%), Postives = 110/155 (70.97%), Query Frame = 0


Query: 7   VPDPNEKRRKI------SINDNLDILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEE 66
           V   N KR+++      SIND+ D+L+EIL+RLDG SL  AACVCRLW  + R++S+WEE
Sbjct: 10  VEKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEE 69

Query: 67  VCFRHVTSPLPS-SVRSVVAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSL 126
           +CFR V SP PS S+RSVV+ALGGY+ LY + IRPVL+RL       + +WT+D++QLSL
Sbjct: 70  LCFRQV-SPRPSLSLRSVVSALGGYRCLYFLCIRPVLARL------PKLLWTRDQLQLSL 129

Query: 127 SLFCVDYYERL---AGTGRDASALSLMFLCNTVNV 152
           SL+CV YYERL   A  G DA   SL+FL   VNV
Sbjct: 130 SLYCVHYYERLYVGAWLG-DAPPSSLIFLRKPVNV 156

[Close]

BLAST of Sed0018645 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 78.6 bits (192), Expect = 4.9e-15
Identity = 42/118 (35.59%), Postives = 75/118 (63.56%), Query Frame = 0


Query: 22  NLD--ILIEILKRLDGPSLGVAACVCRLWCRIGRSESVWEEVCFRHVTS--PLPSSVRSV 81
           NLD  ++ E+LK +D  +L +++CV ++W +  + E +WE +C RH T+     + +RSV
Sbjct: 34  NLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSV 93

Query: 82  VAALGGYKRLYMVSIRPVLSRLRCSEVVRRRVWTQDEVQLSLSLFCVDYYERLAGTGR 136
           V ALGG++RL+ + + P+      S+   R  + +DE++L+LSL  + YYE+++ T R
Sbjct: 94  VLALGGFRRLHSLYLWPL------SKPNPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

The following BLAST results are available for this feature:

BLAST of Sed0018645 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902594.1	3.0e-67	86.27	F-box protein SNE [Benincasa hispida]	[more]
XP_022947535.1	6.7e-67	86.93	F-box protein SNE-like [Cucurbita moschata] >XP_022971122.1 F-box protein SNE-li...	[more]
XP_004140002.1	9.7e-66	84.31	F-box protein SNE [Cucumis sativus] >XP_031743985.1 F-box protein SNE [Cucumis s...	[more]
XP_022985800.1	2.8e-65	83.12	F-box protein SNE-like [Cucurbita maxima]	[more]
XP_022943904.1	4.8e-65	81.94	F-box protein SNE-like [Cucurbita moschata] >KAG7010780.1 F-box protein SNE, par...	[more]

BLAST of Sed0018645 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUB6	3.2e-35	55.48	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]
Q9STX3	6.9e-14	35.59	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	3.8e-12	34.43	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]

BLAST of Sed0018645 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I140	3.3e-67	86.93	F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111469889 PE=4 SV=1	[more]
A0A6J1G764	3.3e-67	86.93	F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111451371 PE=4 SV=1	[more]
A0A0A0KAT5	4.7e-66	84.31	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G111930 PE=4 ...	[more]
A0A6J1JCA9	1.4e-65	83.12	F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111483741 PE=4 SV=1	[more]
A0A6J1FVJ9	2.3e-65	81.94	F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111448489 PE=4 SV=1	[more]

BLAST of Sed0018645 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48170.1	2.3e-36	55.48	F-box family protein	[more]
AT4G24210.1	4.9e-15	35.59	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 23..61 e-value: 0.0054 score: 25.9
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 24..64 e-value: 5.1E-8 score: 32.7
None	No IPR available	GENE3D	1.20.1280.50		coord: 11..102 e-value: 6.7E-9 score: 37.6
None	No IPR available	PANTHER	PTHR47750:SF1	F-BOX PROTEIN SNE	coord: 5..151
IPR044184	F-box protein SNE	PANTHER	PTHR47750	F-BOX PROTEIN SNE	coord: 5..151
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 24..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018645.1	Sed0018645.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009937	regulation of gibberellic acid mediated signaling pathway
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding