Sed0018530 (gene) Chayote v1

Overview


Name	Sed0018530
Type	gene
Organism	Sechium edule (Chayote v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	LG01: 20397825 .. 20401696 (+)
RNA-Seq Expression	Sed0018530
Synteny	Sed0018530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGATTTAACAAGTTTATTGATAGAGCTGAGTTGATTGATCCTCCTACACAAAACAACTTTTTTACTTGGTCAAACCTCAGAATTTCTCCTACTCTATCTCGTCTTGATAGATTCCTTTTCTCAGAAGCCTGGCTTCAAAAATTTCAACTCCATCATACAACAAGACGGAACAGAGTAACATCAGATCATTTTCCTATCCTACTTGAATCTCAACATCTCAAGTGGGGCCTCTGTCCTTTTCGTTTTGAAAATGTTTGGTTAAGCAATAATCATTTTGGTGAAGCTTTGAATTCTTGGTGGGCTGACTCATATACTCCTGGGCACATTGGATATTCTTTCATGGGTAACTTGAAGAAAATTGCTGCACATTGTAAGGTTTGGAATGAAAGGCACTTTGCTTCTTCTATGGCTGCAAAAAAGGAGATTGTGAATGAAATTGCTGCTATCGATGCTAAAGAGGAACTTTTATTGCTGGATCAAACTGATGTGGAAAGGCGTATAGCTTTAAAGGCTGATCTGTGTGCTATCACAATTAAAGATTCTAGAATTTGGAGGCAGCGATGCAAGAAAGATTGGCTTCTTGATGGCGATGAAAACAACTCTTTCTTTCATAAATCTTGCACAACTAAGAGGAGATATAATTTTATTTTTGAGATCATCGACCATATGGGGAATAGTTGTGTAACTGACATTTCTATTGAGGCAGAATTTTTTAGATTCTTTGATGATTTATATAAGGGTCAAGCTAATGATGCGTGGATCGTATCAAATTTGGATTGGCATCCTATTTCGGGCAATCAAGCATCTTCTTTATGTCAACCATTCACCGAGGAGGAAATCCACAATGGCCTTAAGAGCATCGGAAGCAACAAGGCCCCTGGACCTGACGGTTTTACTATCGAAATTTTTAAAAAAATTGGAACATTTTCAAACCATCTATATTGTCTTTGTTCCAAGACTTTTTTCAGACCAACATAGTGAATCGTGCTTTGAATGAAACTTATGTTGCTTTGATCCCCAAAGTGGTTAAGCCAACTATGGTCTCCGAGTTTAGGCCTATTAGCCTCATTACTAGCGTTTATAAAATATTATCAAAAGTGCTTGCTGAAAGACTTAAGTCGGTTTTGCCATCTACCATTTGCCCGAATCAATGCATTTTTGTTCATGGAAGGCAAATTACTGATGCTGTTCTGATTGCTAACGAGGTTATTGATTTTTGGCGTTGTACTAAACAAGGAGGGGTGGTGCTCAAGCTTGATGTTGAAAAAGCTTTTGACAAAATCAGTTGGAAGTTTCTTCTCGCTATCATGAAGTTTAAAGGGTTCAGTAAAAAATGGATAGATTGGATACATGCATGTATCTCCACTGTCAGTTATTCTATCATTGTTAATGGTCGGCCTCGTGGTAAGATAAAAGCTAAGAGGGGTATTAGACAAGGTGATCCTTTGTCTCCCTTTTTATTTGTTTTGGCTATGGACTATCTCTCTCGAATGCTTAACGATGCTCAACATAAAGGAATCATTGAGGGATGTATTATGAAAGAATGTCACATTACTCACCTTCTATTTGTTGACGACATCCTTATTTTCTCTAAGGCTGACACTCTCAAGATGCAAAGCATTCTTTACATTATTAAGGCCTTTGAAGCAGCTTCAAGTCTCAAAATTAATATAAAAAAATCCTCTCTATCTGATATAAACATCCCTATCACTAAACATGAAGAACTATCTGCTCTTTGGGGTTGCCCGTTTTACCATTTTCCTATCAATTATTTAGGGATGCCTTTAGGTGGTAATCCTAGGACCTCGGCTTTTTGGGAGCCCACCGTTGAGAAAATCCACAAGAAGCTTGATAGTTGGCAATACTCTTTTTTATCTAAAGGTGGTAGGTTGACTTTGGTTCAATCTGTTCTTACCAATCTACCTACCTATCTGTTATCTGTTTTTAAGGCTCCTTTAACTATTTGCAAGAAGATAGAGAGAATGATGAGAAACTTTCTTTGGAAAGGTATGGATAACAATGGTGGCTCAAATTTGGTGAGATGGGATTTAGTGACTCTTCAAAAAGAGTGTGGCGGCATGGGCATTCAAAAAATTCATGATCAGAACTTAGCTCTTCTTGGGAAGTGGATCTTGCGTTATGTTAATGAAAAAAAATCTTTATGGAGACGTGTTATACATGCCAAATATGATGCCAATTCTCCGGGCAGTTTTCCCTCAATCTGTCGTCATACTAGTGCTAAATCACCTTGGTTTCACATCACTCCTCTAATATGGGCATCATGTCTGAAAATATCTCTTGGAAGATTAACAATGGTCATAATACACTATTCTGGTATGACTCTTGGGTTGCCGAAGGCCCTTTACATATTGCTCATAGACGATTTTTTGCTAAAGCAAAATCTAAATGTATCACTATAAAAGATGCCTGGAATGTTTCTGAAAACAGATGGGACCCAAACCCATTCCGCCCATTATTAGATCGCGAAACTGAACAATGGAGGGTGATATCCGAGAGGTGGCCGCCGCTCCTAAGTCTCCCTCACATGGAAGATGTTGCTATATGGAAGCCTGCTGCTAATTCTATCTTTTATGTTGGATCCCTCAAATTGCTTCTTGCTTCTAATCCAATTGAGAGGAGGGGTACAATTATATCGAGCAATTTTTGGAGGAATGTGATCCCCAAAAACATCAAGGTTTTTTTTGTGGACCTTGTTCAATGATGGATTAAATACAACCGAGACTTTACAGCGGAGAAGAAGATCCCAATCTCTCTGTCCTAGCTGGTGTATTATGTGTAAAAAGAGTGATGAAACTGCTAACCATCTTTTTTTGAGCTGTGATGTTGTGAAGGAGCTTTGGGCTAAAGTTAATCCTCTTTTGTTTCAATCTTTTACTCATCTACATGTGGCTGATTTCATTAAATTGTATATGGACTCCCCTATCACTACCCAAAAATCAACACTGCAGATTTGTTTTGGGGCAGCCATTTTATGGAACTTATGGAAGGAGAGGAATTCTAGATTATTTGACAACAATTTCGTGGAGAGATCTATTGCCTCATTATTGGATAGCATTTTACTTAATATGGTTTGTTGGTGTTACAAATCTCTCTTATTTAAAGACTATGACATAGCTTCCATCGCTCTTAATTGGAAAACTTTTTTATAATATCTTTTTAGTATGCTCCTTGCATGCATTTGGAATGGAATGAATGTGTCCTTTTCCAAAAAAAAAAAAGCTAGGGTGTTCTGAAAAAAAAAACTATAAAAGCTAGCGCATGTCTTCTACTTCTTTTAACAAGAATTAGTTGATGTTTCAAAAGAAAAAAAAAGGAGTTAGTTGGTTGAGATTTCTCTTTTTTTATTCTTATATTTCATTTTATTATTATTATTTTTAATTCTTTTTGGATCTCTAAATTACTTAATATAACATTCATCTTAATATTTGTTGTAATATTGATTTTCTATTTTGAAGGTAAGATAAGAAGCTAATGGAGATGATATCGTTTTCTTTCAATTGATATTTTTACTTATCCATCCGCGTATCTTTCAAAAATGGAAACTTAAGGAACTGCTTTATAAACACATGGATAAAAAATAACGTATTGCATTTAGCCTCGTCATGCCTACTAGCACTAGTTATTTTGGTTTTCTACTACCAGTTTTCACTATAACCTCAACTCTATTTATCGGTCTAAACAAGATACAACTTATTTGATTGAAATTAATTGATCAAAAAACGAAAATCTTTTATAATTTGAGGTAAAAAAATGAAGGTTTAAGATTCTTACTTTTGGCGAAATCCTTAAAAATTTCACATTTTTAACATAAATATGAATTTATTTTCTTTTTGAAGGTAAGATAA

mRNA sequence

ATGAGAAGATTTAACAAGTTTATTGATAGAGCTGAGTTGATTGATCCTCCTACACAAAACAACTTTTTTACTTGGTCAAACCTCAGAATTTCTCCTACTCTATCTCGTCTTGATAGATTCCTTTTCTCAGAAGCCTGGCTTCAAAAATTTCAACTCCATCATACAACAAGACGGAACAGAGTAACATCAGATCATTTTCCTATCCTACTTGAATCTCAACATCTCAAGTGGGGCCTCTGTCCTTTTCGTTTTGAAAATGTTTGGTTAAGCAATAATCATTTTGGTGAAGCTTTGAATTCTTGGTGGGCTGACTCATATACTCCTGGGCACATTGGATATTCTTTCATGGGTAACTTGAAGAAAATTGCTGCACATTGTAAGGTTTGGAATGAAAGGCACTTTGCTTCTTCTATGGCTGCAAAAAAGGAGATTGTGAATGAAATTGCTGCTATCGATGCTAAAGAGGAACTTTTATTGCTGGATCAAACTGATGTGGAAAGGCGTATAGCTTTAAAGGCTGATCTATGGGACCCAAACCCATTCCGCCCATTATTAGATCGCGAAACTGAACAATGGAGGGTGATATCCGAGAGGTGGCCGCCGCTCCTAAGTCTCCCTCACATGGAAGATGTTGCTATATGGAAGCCTGCTGCTAATTCTATCTTTTATGTTGGATCCCTCAAATTGCTTCTTGCTTCTAATCCAATTGAGAGGAGGGGTACAATTATATCGAGCAATTTTTGGAGGAATGTGATCCCCAAAAACATCAAGGTAAGATAA

Coding sequence (CDS)

ATGAGAAGATTTAACAAGTTTATTGATAGAGCTGAGTTGATTGATCCTCCTACACAAAACAACTTTTTTACTTGGTCAAACCTCAGAATTTCTCCTACTCTATCTCGTCTTGATAGATTCCTTTTCTCAGAAGCCTGGCTTCAAAAATTTCAACTCCATCATACAACAAGACGGAACAGAGTAACATCAGATCATTTTCCTATCCTACTTGAATCTCAACATCTCAAGTGGGGCCTCTGTCCTTTTCGTTTTGAAAATGTTTGGTTAAGCAATAATCATTTTGGTGAAGCTTTGAATTCTTGGTGGGCTGACTCATATACTCCTGGGCACATTGGATATTCTTTCATGGGTAACTTGAAGAAAATTGCTGCACATTGTAAGGTTTGGAATGAAAGGCACTTTGCTTCTTCTATGGCTGCAAAAAAGGAGATTGTGAATGAAATTGCTGCTATCGATGCTAAAGAGGAACTTTTATTGCTGGATCAAACTGATGTGGAAAGGCGTATAGCTTTAAAGGCTGATCTATGGGACCCAAACCCATTCCGCCCATTATTAGATCGCGAAACTGAACAATGGAGGGTGATATCCGAGAGGTGGCCGCCGCTCCTAAGTCTCCCTCACATGGAAGATGTTGCTATATGGAAGCCTGCTGCTAATTCTATCTTTTATGTTGGATCCCTCAAATTGCTTCTTGCTTCTAATCCAATTGAGAGGAGGGGTACAATTATATCGAGCAATTTTTGGAGGAATGTGATCCCCAAAAACATCAAGGTAAGATAA

Protein sequence

MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNSWWADSYTPGHIGYSFMGNLKKIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLWDPNPFRPLLDRETEQWRVISERWPPLLSLPHMEDVAIWKPAANSIFYVGSLKLLLASNPIERRGTIISSNFWRNVIPKNIKVR

Homology

[Close]

BLAST of Sed0018530 vs. NCBI nr
Match: TYK29577.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 8.1e-36
Identity = 83/175 (47.43%), Postives = 102/175 (58.29%), Query Frame = 0


Query: 1   MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNR 60
           M+RFN FI    LIDPP  N  FTWSNLR   TLSRLDRFLFS  W   F  H +    R
Sbjct: 292 MKRFNTFISNCNLIDPPLTNAKFTWSNLRAQATLSRLDRFLFSTHWENIFPGHTSKVLTR 351

Query: 61  VTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNSWWADSYTPGHIGYSFMGNLK 120
            TSDHFPI+LES  + WG  PFRF N +L +  + + +  WW ++  PG+ GYSFM  LK
Sbjct: 352 TTSDHFPIVLESSTISWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMHRLK 411

Query: 121 KIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL 176
           ++A   K W       + A+KK  + EI  ID  E      +   E+RIALKADL
Sbjct: 412 QLALKIKAWGREKKGKNEASKKAWIKEIDLIDKLEAEGSATEIHREKRIALKADL 466

[Close]

BLAST of Sed0018530 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.5 bits (402), Expect = 4.0e-35
Identity = 81/175 (46.29%), Postives = 101/175 (57.71%), Query Frame = 0


Query: 1   MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNR 60
           MRRFN FI    LIDPP  N  +TWSNLR   TLSRLDRFLF+  W   F  H +    R
Sbjct: 88  MRRFNSFISNCNLIDPPLSNAKYTWSNLRAQATLSRLDRFLFTSQWENIFPGHTSKVLTR 147

Query: 61  VTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNSWWADSYTPGHIGYSFMGNLK 120
            TSDHFPI+LES  + WG  PFRF N +L +  + + +  WW ++  PG+ GYSFM  LK
Sbjct: 148 TTSDHFPIVLESSTISWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMRRLK 207

Query: 121 KIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL 176
           ++A   K W       + A+KK  + EI  ID  E      +   E+R ALKADL
Sbjct: 208 QLALIIKTWGRDKKGKNEASKKACIKEIDQIDKLEAEGSATEIHREKRTALKADL 262

[Close]

BLAST of Sed0018530 vs. NCBI nr
Match: KAA0063661.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 6.8e-35
Identity = 82/175 (46.86%), Postives = 106/175 (60.57%), Query Frame = 0


Query: 5   NKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSD 64
           N FI    LIDPP  NN +TWSNLRISPT SRLDRFL++  W   F  H T    R TSD
Sbjct: 19  NNFISNNSLIDPPLSNNRYTWSNLRISPTFSRLDRFLYNPKWEVLFNSHITRTLPRPTSD 78

Query: 65  HFPILLE--SQHLKWGLCPFRFENVWLSNNHFGEALNSWWADSYTPGHIGYSFMGNLKKI 124
           HFP+  E  S  ++WG  PFR  ++ L++  F   +  WW  S   GH+G++F+  LK +
Sbjct: 79  HFPLACEDSSPTVRWGPAPFRLNSIALNDPEFKRNMERWWDLSAQKGHLGFAFIQRLKSL 138

Query: 125 AAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLWD 178
           A   K W +  F S  +AK+ I+ E+ AID KE   LL Q D +RR+ALKA+L D
Sbjct: 139 ANLIKPWQKEKFHSLSSAKENIIKEVDAIDKKELDTLLCQEDSDRRLALKAELND 193

[Close]

BLAST of Sed0018530 vs. NCBI nr
Match: TYJ99326.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 6.8e-35
Identity = 82/175 (46.86%), Postives = 99/175 (56.57%), Query Frame = 0


Query: 1   MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNR 60
           M+RFN FI    LIDPP  N  FTWSNLR   TLSRLDRFLFS  W   F  H +    R
Sbjct: 88  MKRFNTFISNCNLIDPPLTNAKFTWSNLRAQATLSRLDRFLFSTQWENIFPGHTSKVLTR 147

Query: 61  VTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNSWWADSYTPGHIGYSFMGNLK 120
            TSDHFPI+LES  + WG  PFRF N +L +  +   +  WW ++  PG  GYSFM  LK
Sbjct: 148 TTSDHFPIVLESSSISWGPSPFRFTNAYLKDPDYKRNIEFWWGNTSQPGFAGYSFMHRLK 207

Query: 121 KIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL 176
           ++A   K W         A+KK  + EI  I+  E      +   E+RIALKADL
Sbjct: 208 QLAMKIKAWGREKKGKDEASKKAWIKEIDLINKLEAEGTSTEIHREKRIALKADL 262

[Close]

BLAST of Sed0018530 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 5.8e-34
Identity = 83/199 (41.71%), Postives = 110/199 (55.28%), Query Frame = 0


Query: 1   MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNR 60
           M  FN FI   ELIDPP  NN FTWSNLR++PT SRLDRFL S+ W   F LH +    R
Sbjct: 768 MANFNNFISVNELIDPPPLNNNFTWSNLRVNPTYSRLDRFLLSKGWENAFGLHTSRTLER 827

Query: 61  VTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNSWWADSYTPGHIGYSFMGNLK 120
             SDHFPILLES  +KWG CPFR  N  L +  F +   +WW  S   G  GY+F+ +L 
Sbjct: 828 NISDHFPILLESPQIKWGPCPFRLNNSSLRDKEFQKNFINWWNSSKQAGFPGYAFIQSLN 887

Query: 121 KIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLW--DP 180
            ++   K W         A KK ++ EI  ID  E    +  T  ++RI+LK+DL   + 
Sbjct: 888 SLSKFIKEWQHNKVNLYDANKKALLKEIDIIDKLEFQGEMSTTHHQKRISLKSDLLSIEN 947

Query: 181 NPFRPLLDRETEQWRVISE 198
           N  +    R  ++W ++ +
Sbjct: 948 NQAQIWHQRARQRWNLLGD 966

[Close]

BLAST of Sed0018530 vs. ExPASy TrEMBL
Match: A0A5D3E0F6 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001830 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.9e-36
Identity = 83/175 (47.43%), Postives = 102/175 (58.29%), Query Frame = 0


Query: 1   MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNR 60
           M+RFN FI    LIDPP  N  FTWSNLR   TLSRLDRFLFS  W   F  H +    R
Sbjct: 292 MKRFNTFISNCNLIDPPLTNAKFTWSNLRAQATLSRLDRFLFSTHWENIFPGHTSKVLTR 351

Query: 61  VTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNSWWADSYTPGHIGYSFMGNLK 120
            TSDHFPI+LES  + WG  PFRF N +L +  + + +  WW ++  PG+ GYSFM  LK
Sbjct: 352 TTSDHFPIVLESSTISWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMHRLK 411

Query: 121 KIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL 176
           ++A   K W       + A+KK  + EI  ID  E      +   E+RIALKADL
Sbjct: 412 QLALKIKAWGREKKGKNEASKKAWIKEIDLIDKLEAEGSATEIHREKRIALKADL 466

[Close]

BLAST of Sed0018530 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.9e-35
Identity = 81/175 (46.29%), Postives = 101/175 (57.71%), Query Frame = 0


Query: 1   MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNR 60
           MRRFN FI    LIDPP  N  +TWSNLR   TLSRLDRFLF+  W   F  H +    R
Sbjct: 88  MRRFNSFISNCNLIDPPLSNAKYTWSNLRAQATLSRLDRFLFTSQWENIFPGHTSKVLTR 147

Query: 61  VTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNSWWADSYTPGHIGYSFMGNLK 120
            TSDHFPI+LES  + WG  PFRF N +L +  + + +  WW ++  PG+ GYSFM  LK
Sbjct: 148 TTSDHFPIVLESSTISWGPSPFRFTNAYLKDPDYKKNIEFWWGNTSQPGYAGYSFMRRLK 207

Query: 121 KIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL 176
           ++A   K W       + A+KK  + EI  ID  E      +   E+R ALKADL
Sbjct: 208 QLALIIKTWGRDKKGKNEASKKACIKEIDQIDKLEAEGSATEIHREKRTALKADL 262

[Close]

BLAST of Sed0018530 vs. ExPASy TrEMBL
Match: A0A5D3BJP3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005410 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.3e-35
Identity = 82/175 (46.86%), Postives = 99/175 (56.57%), Query Frame = 0


Query: 1   MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNR 60
           M+RFN FI    LIDPP  N  FTWSNLR   TLSRLDRFLFS  W   F  H +    R
Sbjct: 88  MKRFNTFISNCNLIDPPLTNAKFTWSNLRAQATLSRLDRFLFSTQWENIFPGHTSKVLTR 147

Query: 61  VTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNSWWADSYTPGHIGYSFMGNLK 120
            TSDHFPI+LES  + WG  PFRF N +L +  +   +  WW ++  PG  GYSFM  LK
Sbjct: 148 TTSDHFPIVLESSSISWGPSPFRFTNAYLKDPDYKRNIEFWWGNTSQPGFAGYSFMHRLK 207

Query: 121 KIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADL 176
           ++A   K W         A+KK  + EI  I+  E      +   E+RIALKADL
Sbjct: 208 QLAMKIKAWGREKKGKDEASKKAWIKEIDLINKLEAEGTSTEIHREKRIALKADL 262

[Close]

BLAST of Sed0018530 vs. ExPASy TrEMBL
Match: A0A5A7VD46 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G001760 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.3e-35
Identity = 82/175 (46.86%), Postives = 106/175 (60.57%), Query Frame = 0


Query: 5   NKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNRVTSD 64
           N FI    LIDPP  NN +TWSNLRISPT SRLDRFL++  W   F  H T    R TSD
Sbjct: 19  NNFISNNSLIDPPLSNNRYTWSNLRISPTFSRLDRFLYNPKWEVLFNSHITRTLPRPTSD 78

Query: 65  HFPILLE--SQHLKWGLCPFRFENVWLSNNHFGEALNSWWADSYTPGHIGYSFMGNLKKI 124
           HFP+  E  S  ++WG  PFR  ++ L++  F   +  WW  S   GH+G++F+  LK +
Sbjct: 79  HFPLACEDSSPTVRWGPAPFRLNSIALNDPEFKRNMERWWDLSAQKGHLGFAFIQRLKSL 138

Query: 125 AAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLWD 178
           A   K W +  F S  +AK+ I+ E+ AID KE   LL Q D +RR+ALKA+L D
Sbjct: 139 ANLIKPWQKEKFHSLSSAKENIIKEVDAIDKKELDTLLCQEDSDRRLALKAELND 193

[Close]

BLAST of Sed0018530 vs. ExPASy TrEMBL
Match: A0A5D3BKT8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005570 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-34
Identity = 83/199 (41.71%), Postives = 111/199 (55.78%), Query Frame = 0


Query: 1   MRRFNKFIDRAELIDPPTQNNFFTWSNLRISPTLSRLDRFLFSEAWLQKFQLHHTTRRNR 60
           M  FN FI   ELIDPP  NN FTWSNLR++PT SRLDRFL S+ W   F LH +    R
Sbjct: 768 MANFNNFISVNELIDPPLLNNNFTWSNLRVNPTYSRLDRFLLSKGWENAFGLHTSRTLER 827

Query: 61  VTSDHFPILLESQHLKWGLCPFRFENVWLSNNHFGEALNSWWADSYTPGHIGYSFMGNLK 120
             SDHFPILLES  +KWG CPFR  N  L +  F +   +WW +S   G  GY+F+ +L 
Sbjct: 828 NISDHFPILLESPQIKWGPCPFRLNNSSLRDKDFQKNFINWWNNSKQAGFPGYAFIQSLN 887

Query: 121 KIAAHCKVWNERHFASSMAAKKEIVNEIAAIDAKEELLLLDQTDVERRIALKADLW--DP 180
            ++   K W         A KK ++ EI  ID  E    +  T  ++RI+LK+DL   + 
Sbjct: 888 SLSKFIKEWQHNKVNLYDANKKALLKEIDIIDKLEFQGEMSTTHHQKRISLKSDLLSIEN 947

Query: 181 NPFRPLLDRETEQWRVISE 198
           N  +    R  ++W ++ +
Sbjct: 948 NQAQIWHQRARQRWNLLGD 966

The following BLAST results are available for this feature:

BLAST of Sed0018530 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29577.1	8.1e-36	47.43	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	4.0e-35	46.29	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]
KAA0063661.1	6.8e-35	46.86	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYJ99326.1	6.8e-35	46.86	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK08190.1	5.8e-34	41.71	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Sed0018530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0018530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E0F6	3.9e-36	47.43	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	1.9e-35	46.29	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BJP3	3.3e-35	46.86	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7VD46	3.3e-35	46.86	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BKT8	2.8e-34	41.71	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Sed0018530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 1..71 e-value: 4.3E-9 score: 38.5
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 1..71
None	No IPR available	PANTHER	PTHR33710	BNAC02G09200D PROTEIN	coord: 1..177
None	No IPR available	PANTHER	PTHR33710:SF32	SUBFAMILY NOT NAMED	coord: 1..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018530.1	Sed0018530.1	mRNA