Sed0018338 (gene) Chayote v1

Overview
NameSed0018338
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG13: 1537658 .. 1538267 (+)
RNA-Seq ExpressionSed0018338
SyntenySed0018338
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGCTTTCTACAATCACAAACCAATGGCTTCACCAACAGCTTTGGTTGCTTGGAACAAGGCTATCTTTCTTGCTTTGCTTCTTCTTGCTTTCAACGTTTCAGCTCGAGAACTTACGGGAACGTCCAATGTCATGGCTCGCATGACCCGTAAGTATTTCCATCTTAAAATCAATTGACTATAAAAAGAGCAGTCCAGGCTAATATGAGGTCTCCTCATTCTTTCAATATGAGATCTTCAACCATTTTTAACGATATCATTTTCGATTTTCTTTTTTTGTTTCGACAGGCGAGATGATAAAGGAAACTAATGGTGTGATGGGGTCGAGATTAATTGCTAGACAATTGGATTCCTCTTGGAAAGGAAATTATTTTCCTCCCCCTCTTCCTCCTCCTCCTCCATGTTCCTCCTAATGGAAATGTCTTCAAAGTTTGTGTGTATTTAATCATTAGTTATAACTTTTTGTGGGTGTTGGGTGTGGATATAATAAGGATCTCACCAAATAAATTATATGAAGAACTTCTTTTTATGTAAGGTTTTGGCCAAATACATATACCCTTTTGATGTAATAGTCAGCTTGAATAATTGAAGTTTAATAGCAATGTATTTTTT

mRNA sequence

GAGCTTTCTACAATCACAAACCAATGGCTTCACCAACAGCTTTGGTTGCTTGGAACAAGGCTATCTTTCTTGCTTTGCTTCTTCTTGCTTTCAACGTTTCAGCTCGAGAACTTACGGGAACGTCCAATGTCATGGCTCGCATGACCCGCGAGATGATAAAGGAAACTAATGGTGTGATGGGGTCGAGATTAATTGCTAGACAATTGGATTCCTCTTGGAAAGGAAATTATTTTCCTCCCCCTCTTCCTCCTCCTCCTCCATGTTCCTCCTAATGGAAATGTCTTCAAAGTTTGTGTGTATTTAATCATTAGTTATAACTTTTTGTGGGTGTTGGGTGTGGATATAATAAGGATCTCACCAAATAAATTATATGAAGAACTTCTTTTTATGTAAGGTTTTGGCCAAATACATATACCCTTTTGATGTAATAGTCAGCTTGAATAATTGAAGTTTAATAGCAATGTATTTTTT

Coding sequence (CDS)

ATGGCTTCACCAACAGCTTTGGTTGCTTGGAACAAGGCTATCTTTCTTGCTTTGCTTCTTCTTGCTTTCAACGTTTCAGCTCGAGAACTTACGGGAACGTCCAATGTCATGGCTCGCATGACCCGCGAGATGATAAAGGAAACTAATGGTGTGATGGGGTCGAGATTAATTGCTAGACAATTGGATTCCTCTTGGAAAGGAAATTATTTTCCTCCCCCTCTTCCTCCTCCTCCTCCATGTTCCTCCTAA

Protein sequence

MASPTALVAWNKAIFLALLLLAFNVSARELTGTSNVMARMTREMIKETNGVMGSRLIARQLDSSWKGNYFPPPLPPPPPCSS
Homology
BLAST of Sed0018338 vs. NCBI nr
Match: KAG7030841.1 (hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.4 bits (241), Expect = 5.9e-17
Identity = 55/83 (66.27%), Postives = 62/83 (74.70%), Query Frame = 0

Query: 1  MASPTALVAWNKAIFLALLLLAFNVSARELTGTSNVMARMTREMIKETNGVMGSRLIARQ 60
          MASP+A V W + +F ALLLLAFNVSAREL GT N++AR   EM  ETN  +G RLIARQ
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGT-NIVARTVHEMTIETN--VGRRLIARQ 60

Query: 61 LDSSWKGNYFPPP---LPPPPPC 81
          LD+SW GNY PPP    PPPPPC
Sbjct: 61 LDTSWGGNYSPPPPRRRPPPPPC 80

BLAST of Sed0018338 vs. NCBI nr
Match: KAG6600178.1 (hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 55/84 (65.48%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 1  MASPTALVAWNKAIFLALLLLAFNVSARELTGTSNVMARMTREMIKETNGVMGSRLIARQ 60
          MASP+A V W + +F ALLLLAFNVSAREL GT N++AR   EM  ETN  +G RLIARQ
Sbjct: 1  MASPSAFVPWKEVVFFALLLLAFNVSARELVGT-NIVARTVHEMTIETN--VGRRLIARQ 60

Query: 61 LDSSWKGNYFPP----PLPPPPPC 81
          LD+SW GNY PP    P PPPPPC
Sbjct: 61 LDTSWGGNYSPPPPRRPPPPPPPC 81

BLAST of Sed0018338 vs. NCBI nr
Match: KAG6576804.1 (hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 6.6e-16
Identity = 55/85 (64.71%), Postives = 64/85 (75.29%), Query Frame = 0

Query: 1  MASPTALVAWNKAIFLALLLLAFNVSARELTGTSNVMARMTREMIKETNGVM-GSRLIAR 60
          MASPTALVAW K  FL  LL+A +VSAREL G +NV+ R  REM    NGV+ GSRLIAR
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAG-ANVVTRTAREMATMPNGVIGGSRLIAR 60

Query: 61 QLDSSWKGNYFPPP--LPPPPPCSS 83
          QLD++W+G+Y PPP   PPPPP SS
Sbjct: 61 QLDTAWRGHYSPPPPRSPPPPPHSS 84

BLAST of Sed0018338 vs. NCBI nr
Match: KAG7014831.1 (hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 94.0 bits (232), Expect = 6.6e-16
Identity = 55/85 (64.71%), Postives = 64/85 (75.29%), Query Frame = 0

Query: 1  MASPTALVAWNKAIFLALLLLAFNVSARELTGTSNVMARMTREMIKETNGV-MGSRLIAR 60
          MASPTALVAW K  FL  LL+A +VSAREL G +NV+ R  REM    NGV +GSRLIAR
Sbjct: 1  MASPTALVAWKKVAFLGFLLIAVSVSARELAG-ANVVTRTAREMATMPNGVIVGSRLIAR 60

Query: 61 QLDSSWKGNYFPPP--LPPPPPCSS 83
          QLD++W+G+Y PPP   PPPPP SS
Sbjct: 61 QLDTAWRGHYSPPPPRSPPPPPHSS 84

BLAST of Sed0018338 vs. NCBI nr
Match: KGN57260.1 (hypothetical protein Csa_011296 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 43/78 (55.13%), Postives = 51/78 (65.38%), Query Frame = 0

Query: 1  MASPT-ALVAWNKA-IFLALLLLAFNVSARELTGTSNVMARMTREMIKETNGVMGSRLIA 60
          MA+ T A VAW K  IF  LLLLA+N+SAREL   +     +T EM    N V+  RL  
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEM----NDVIDRRLFV 60

Query: 61 RQLDSSWKGNYFPPPLPP 77
          RQLD+SW+GNYFPPP PP
Sbjct: 61 RQLDTSWRGNYFPPPKPP 74

BLAST of Sed0018338 vs. ExPASy TrEMBL
Match: A0A0A0L5K7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.9e-10
Identity = 43/78 (55.13%), Postives = 51/78 (65.38%), Query Frame = 0

Query: 1  MASPT-ALVAWNKA-IFLALLLLAFNVSARELTGTSNVMARMTREMIKETNGVMGSRLIA 60
          MA+ T A VAW K  IF  LLLLA+N+SAREL   +     +T EM    N V+  RL  
Sbjct: 1  MATATIASVAWKKVIIFFTLLLLAYNISARELVARTTCEPSLTTEM----NDVIDRRLFV 60

Query: 61 RQLDSSWKGNYFPPPLPP 77
          RQLD+SW+GNYFPPP PP
Sbjct: 61 RQLDTSWRGNYFPPPKPP 74

BLAST of Sed0018338 vs. ExPASy TrEMBL
Match: A0A0A0LB11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.2e-08
Identity = 45/82 (54.88%), Postives = 52/82 (63.41%), Query Frame = 0

Query: 1  MASPTALVAWNKAIFLALLLLAFNVSARELTGTSNVMARMTREMIK-ETNGVMGSRLIAR 60
          MA+P  LV      F +LLLLAFN S       + V+AR  REM+  ETN  MG +L AR
Sbjct: 1  MATPRFLV------FFSLLLLAFNFS-------TGVLARPAREMVAVETNWEMGRKLTAR 60

Query: 61 QLDSSWKGNYFPPP--LPPPPP 80
          QLD+SWKGNY PPP   PPPPP
Sbjct: 61 QLDTSWKGNYSPPPPNRPPPPP 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7030841.15.9e-1766.27hypothetical protein SDJN02_04878 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6600178.11.0e-1665.48hypothetical protein SDJN03_05411, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6576804.16.6e-1664.71hypothetical protein SDJN03_24378, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7014831.16.6e-1664.71hypothetical protein SDJN02_22460, partial [Cucurbita argyrosperma subsp. argyro... [more]
KGN57260.12.0e-0955.13hypothetical protein Csa_011296 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L5K79.9e-1055.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175610 PE=4 SV=1[more]
A0A0A0LB119.2e-0854.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175620 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0018338.1Sed0018338.1mRNA