Sed0018178 (gene) Chayote v1

Overview


Name	Sed0018178
Type	gene
Organism	Sechium edule (Chayote v1)
Description	heterogeneous nuclear ribonucleoprotein 1
Location	LG01: 4101239 .. 4106041 (-)
RNA-Seq Expression	Sed0018178
Synteny	Sed0018178

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAACATCTTCAAAAGCTTCTGTTTTTCACGTTCTCTTTGTAGTGTACAGTTTTGTTTAAACGAAAATGGAATTTCCCGATCTGCTTGGAAACTGTATTTTTTTTTCATAAACAATTTTGACACAAATTCTGAAGCTTAACCAAAAAGTTTCAGGATGAAACTTATCATCGTTCATCCTTTCAGATCTTAGCTTTTTCCAGATTTGGTTTTCTGGGTCTTCGTTAATCGGTTCGTTTTATGGGAATCTGGACTTTATTTTCCCATCTTATGAGGATTTTGATTCAGTTTGGATCTCATTAATCTTGGGTTTTTTCAGGTTTGTCGAAATTTGATTCGAGCTGTATTGATCGACGATGGATCCAGTTTCCCCAAATTGATTATTTCAGTATCTGATTTCTTGGGATATACATTTCTTGGATTGTTTTTTGATTCATATAAGGTACTGATTCTGTTATTGATTTGTGTTGTTCACCTGCATTTGTTGTTCTGCTTCATGAGCTCACAGATTGGATTTCTTGAGCTGATGTTTGTGCATCGATCTTCTACTAGAATGAATCTCTATAGCTGATTTTGTGTATCATGTTTTCATTTGCAATGGATGCTGGGAGTTTTAGATTTTATTGTTTTTTTTATAATCAAAATCGAGTAGAAATGTATGAATGCTATCTGCATTCGAGTTCTTTCTCCCGGATGTGTAGCTGATTCATGGGATAATCACTTGGATGAGCCTCCCTGACCTTTGAGGACCGAAAATTGAATGTTCAACTTTCTACCGTAATATCTCATTGTATAACTGGCTTAGAACCTGACTAAAAACTTCTATAACAACGTTGGATGTTTGTAACATCTTTCATCATTATCAATGTTGGATGTTCAACTTCCTAAGAGATTCAGTTTTGTACTTATAGGATTATCTCATACAATGTTTTTGTTTCCTATTTGCATTTTGATGATTTTTGGACATCTGTATGATATGGCTTCTGTTGCTGTGGTGTGTAGGAAAAAGCAAAAAAAAAATGCAAACTGATAGTGGCAAGTTATTTGTTGGTGGAATATCTTGGGATACTGATGAAGAACGTCTTAAAGAGTATTTCGGTGCCTTTGGTGAGGTTGTAGAAGCTGTCATTATGAAGGATCGGACCACAGGCCGTGGTCGTGGCTTCGGCTTCATTGTTTTTGCTGATCCAAGTGTTGCAGATAGAGCTGTGAGGGAGAAGCATAATATTGATGGAAGAATGGTGAGTTGTTTACCTTTAATGTGTTTCTCAGGACCTGCTAAAATAGCTCATTTCTTTGTTCGCTTGTAATTCAAAAAGTATCGTCGAACATTTATTTTCTGATTCCTTGAGGACTAAATTTTTTGTCCTGATTAAATTTTCAGCTTGTCTTCAATCACAATAGTCTGCATTTTCCATTTTAATGATATTTGAACTTGAGTTTCATTGTTGAGTTTTCCTCATCCTCAGGTTGAAGCTAAAAGGGCTGTTCCCAGGAATGACCAGAACATTGTAGGTAGAACCAGTGGTAGCATTAATGTTTCTCCAGGCCCCGGACGCACTAGAAAGATATTTGTCGGGGGCTTAGCATCGACTGTTACTGAGAGTGAATTCAAGAACTATTTTGATCAATTTGGGACAATTACAGATGTTGTGGTGATGTATGACCACAATACTCTTCGACCCAGGGGATTCGGGTTTATCACATATGATTCAGAAGAAGCAGTAGAAAAGGTTCTTATCAAGACTTTCCATGAATTGAATGGAAAAATGGTCGAAGTTAAGCGTGCAGTTCCAAAAGAGTTGTCACCAAGCCCTAGCCGTAGCCCACTTAGTGGATTCAATTATGGACAGAGTAGGGTCAATAACTTCCTTAATGGTTACAATCAGGGGTACAGTTCTAGTACAAGTGGAGGCTATGGTGTTAGAATGGATGGTAGATTTAGTCCGGTTTCTAGTGGTCGAAGTGTATTAACCCCATTCGGATCAGGTTTTGGAATGGGAGTGAACTATGAGATTGGCTTAAACCCGGGGTACGGGGGAAGTTCCAATTTCGCCAATAATCTCAACTATGGACGGGGACTGAGCCCTTACTACACTGGTAATTCGGATAGGTTTGGCAATCTAGGGTATGAAAGTGGGAATGGTGGAAACTCATCCTTCTTCAGCTCAGCAACTCAAAACTTGTGGGGAAGTGGAGGGCTGAACAATGGAACAAACTCTGCCAATTCCAATGTTCATTTGGGATCAGCAAGCGGCAGCATTGGAGGAAATGTATTTGCCAATTCCGGAGTTAATTGGGGTAGTTCCGGACTTTCGTCTCAAGGTGGAGCAAATACTGTTTTTAGTAATGCTGGGAATCTTAACTATGGAGGTGTTGATAGTGGTTATAATCTCGGAGCTGGAGGATATGGGAGGAACAGTGGTACTGTCTTGCCTCCAACATCATCATTTCCTACCTCAACTGTTGGTTTTGATGGGCCCTTCGCCGATTTCTACAGTCCTAGTTATGGTGATCCCACGTGGCGATCTTCCAATTTTGAAAGAGATGGATCTGGACCCTTTGGTTATGGACTTGGCAGTGCTGCTTCAGAAGTCTCATCCAGAAGCTCTCCTAGTTTTATTGGTGGCCATAGTGTTAATATGAGGCAGTCAAACAGAGGTTAGAGCCACTAATTCAAAATTCATACAATTTCTCTTCCAACTTGTTTTAGTAGTATCTTCTGATTTCTCTCATGAAGATTTTTGTTTTTCAAATGCTCAGATTATGAACATCCAAATGAAAAATTGTGTTTTTGACCTTGCTGAAAGTTGTCATAGGACATTTCAATTCTGCGCTTTATGATCTAGATCTTAGCTGTTATATAGGCAGCATCATTTCAATACTATTCTAGAACGATTTGAGTTTCCAACTGAGGGAACTTATATATATATATACATATGATTTTATACTGACAGTGAGGAAAAGATATACGTTCAATATGTCAGATTATTTAGAGGTAGTTCCGAATTAACATTATTGCGAATGTCTAGAGATATTGGGTGCTTGGATCTTGTTTTTGATAAGATTTTGTCTAAGGACGTTAGATACGAGGAATTAAAACACTATTCCTATTATATCGGTTTGTATTATTGAACTGTCTGGCTGAAGTAGCAATCTTCTGTAGCTGTTTTCTTGGGATTATCAGAAAAAGAAGGAAACACAATTGACCTTTATAATCGTACCAATTGAAGTTATTGGGTTATCTAAATGATGAAGGACATTCTAATATCTAACTTGCTTATAAAATTTGACTGATTTTTCTTTTTTCCTGGAAAGTTGATTTCTCTCATTGTCATTGCCTTGAATTTGGTGATTGAATGCCTGTTGTATCCTCTTTGTGTTTGCATGCTTGCAAATGCAAGTCTGCGATTGTGTAGCTCACTTATTTTACTCGACTAGCTCGAGCATTTGACTAATTCTAGGGCAGTGTAATGCACAACAACCGCATGGTTGAATTCTCTTTTTTGATGCACTAGAAAGAAGGATTGTTCCTTTCCATGAAATCAGGCATTTACAATATCCTAAAATGAACCCCTTTTCATTTTATCATGTATTTATATTCGGGCATCGAGTAAATCTAGTACAACCCTTTTGAATGCCTTCGTTTATGAGTGCCATTCAACTTCACAAAATGCTGTCAGATTACTTGTGATGTTGAATTGAGCTTAGGATAACCAAAGCCGAAGCTGTTGGCCAATGCACACTACACTGTCAACTATTGCGTAACATGTATCGTTATTCTTTTTATTGAATCGTGTTAAATTAACAATCAACTCAAAAGTTTTAAGTTGATAGGTTGGGGTGAATTTAGTTATATCAACTAACACTGTTTTCTCTTCTTTTTTTGAATTCAACAAAATTTGGGGGAGGGCTTAAATCTGTAACCTCTTCATTACTTGGCCATACACCATGTCATTTTGGCTTTCCTCCTTTTATTTCTGTGTACTTTTCTAATGAAAATGAAATAAGATGCATTAGCAATGGAGTGATAATATTCTCTGATTTTAACTGTGACAAATAGACTGTTAGTTACTCAGTCTCCTCATTTTTGCTTTCAGGAAACACTACCTAGGAACGATCGGATATGTCGACATAGTAGATGAAGATAATTGGTGAAGCACATGAAGATGCGGACCAATCAATAGAATATTCAGTTATTACCCTACAAAGAAAAGAAAGAAAAAAAAGCTAACTGAGTGCCAATGCTGAGAACCAAGCTTTAGAGGTATTTAGCCACTTGGGATTTTGTGTTCAGGTTTGAGTTTTGATTAGAAAGTTTTCTTTCTTTTGGTTTTCTTTTCTTTTTCCTTATAATTTGAGTGAGATGTAAAATCAGATTGCGGCAGTATAGCGAAATACGTATCATCATGCATCTTCAGTGAGGTGGGGATCCACAAAGTTATGGACTATGCTTTTTATTTTTTATTTTTAATTTAAGTTACCTTTTTTATTTTTAAAATTTTCAAGTTCATCATAATTGTAGCAGTAAGGCATGAGGCAAAGTTATGAGCTTTGTTGAGGAATGCTCTTTGTCCCATCATTTTGGTTTGTTTTTGAACAGATTGTATCAGAGTTGCTCTTTTTGTTGAATTGTTAGTGTGAAAACATTCTAGGGATGATATCCATCTAGGCTCCCTATGAATAAATTACCACAAATTCTTCGTCTTTTTCGTTTTTCGGGTTATGTTTCGTAACAACGTGGAATTCTTGTTCGACACTTTTAGTTTCTGCTTTGAATGTACAGAAGAAAACCCTTTATTTC

mRNA sequence

CTAAACATCTTCAAAAGCTTCTGTTTTTCACGTTCTCTTTGTAGTGTACAGTTTTGTTTAAACGAAAATGGAATTTCCCGATCTGCTTGGAAACTGTATTTTTTTTTCATAAACAATTTTGACACAAATTCTGAAGCTTAACCAAAAAGTTTCAGGATGAAACTTATCATCGTTCATCCTTTCAGATCTTAGCTTTTTCCAGATTTGGTTTTCTGGGTCTTCGTTAATCGGTTTGTCGAAATTTGATTCGAGCTGTATTGATCGACGATGGATCCAGTTTCCCCAAATTGATTATTTCAGTATCTGATTTCTTGGGATATACATTTCTTGGATTGTTTTTTGATTCATATAAGGAAAAAGCAAAAAAAAAATGCAAACTGATAGTGGCAAGTTATTTGTTGGTGGAATATCTTGGGATACTGATGAAGAACGTCTTAAAGAGTATTTCGGTGCCTTTGGTGAGGTTGTAGAAGCTGTCATTATGAAGGATCGGACCACAGGCCGTGGTCGTGGCTTCGGCTTCATTGTTTTTGCTGATCCAAGTGTTGCAGATAGAGCTGTGAGGGAGAAGCATAATATTGATGGAAGAATGGTTGAAGCTAAAAGGGCTGTTCCCAGGAATGACCAGAACATTGTAGGTAGAACCAGTGGTAGCATTAATGTTTCTCCAGGCCCCGGACGCACTAGAAAGATATTTGTCGGGGGCTTAGCATCGACTGTTACTGAGAGTGAATTCAAGAACTATTTTGATCAATTTGGGACAATTACAGATGTTGTGGTGATGTATGACCACAATACTCTTCGACCCAGGGGATTCGGGTTTATCACATATGATTCAGAAGAAGCAGTAGAAAAGGTTCTTATCAAGACTTTCCATGAATTGAATGGAAAAATGGTCGAAGTTAAGCGTGCAGTTCCAAAAGAGTTGTCACCAAGCCCTAGCCGTAGCCCACTTAGTGGATTCAATTATGGACAGAGTAGGGTCAATAACTTCCTTAATGGTTACAATCAGGGGTACAGTTCTAGTACAAGTGGAGGCTATGGTGTTAGAATGGATGGTAGATTTAGTCCGGTTTCTAGTGGTCGAAGTGTATTAACCCCATTCGGATCAGGTTTTGGAATGGGAGTGAACTATGAGATTGGCTTAAACCCGGGGTACGGGGGAAGTTCCAATTTCGCCAATAATCTCAACTATGGACGGGGACTGAGCCCTTACTACACTGGTAATTCGGATAGGTTTGGCAATCTAGGGTATGAAAGTGGGAATGGTGGAAACTCATCCTTCTTCAGCTCAGCAACTCAAAACTTGTGGGGAAGTGGAGGGCTGAACAATGGAACAAACTCTGCCAATTCCAATGTTCATTTGGGATCAGCAAGCGGCAGCATTGGAGGAAATGTATTTGCCAATTCCGGAGTTAATTGGGGTAGTTCCGGACTTTCGTCTCAAGGTGGAGCAAATACTGTTTTTAGTAATGCTGGGAATCTTAACTATGGAGGTGTTGATAGTGGTTATAATCTCGGAGCTGGAGGATATGGGAGGAACAGTGGTACTGTCTTGCCTCCAACATCATCATTTCCTACCTCAACTGTTGGTTTTGATGGGCCCTTCGCCGATTTCTACAGTCCTAGTTATGGTGATCCCACGTGGCGATCTTCCAATTTTGAAAGAGATGGATCTGGACCCTTTGGTTATGGACTTGGCAGTGCTGCTTCAGAAGTCTCATCCAGAAGCTCTCCTAGTTTTATTGGTGGCCATAGTGTTAATATGAGGCAGTCAAACAGAGGAAACACTACCTAGGAACGATCGGATATGTCGACATAGTAGATGAAGATAATTGGTGAAGCACATGAAGATGCGGACCAATCAATAGAATATTCAGTTATTACCCTACAAAGAAAAGAAAGAAAAAAAAGCTAACTGAGTGCCAATGCTGAGAACCAAGCTTTAGAGGTATTTAGCCACTTGGGATTTTGTGTTCAGGTTTGAGTTTTGATTAGAAAGTTTTCTTTCTTTTGGTTTTCTTTTCTTTTTCCTTATAATTTGAGTGAGATGTAAAATCAGATTGCGGCAGTATAGCGAAATACGTATCATCATGCATCTTCAGTGAGGTGGGGATCCACAAAGTTATGGACTATGCTTTTTATTTTTTATTTTTAATTTAAGTTACCTTTTTTATTTTTAAAATTTTCAAGTTCATCATAATTGTAGCAGTAAGGCATGAGGCAAAGTTATGAGCTTTGTTGAGGAATGCTCTTTGTCCCATCATTTTGGTTTGTTTTTGAACAGATTGTATCAGAGTTGCTCTTTTTGTTGAATTGTTAGTGTGAAAACATTCTAGGGATGATATCCATCTAGGCTCCCTATGAATAAATTACCACAAATTCTTCGTCTTTTTCGTTTTTCGGGTTATGTTTCGTAACAACGTGGAATTCTTGTTCGACACTTTTAGTTTCTGCTTTGAATGTACAGAAGAAAACCCTTTATTTC

Coding sequence (CDS)

ATGCAAACTGATAGTGGCAAGTTATTTGTTGGTGGAATATCTTGGGATACTGATGAAGAACGTCTTAAAGAGTATTTCGGTGCCTTTGGTGAGGTTGTAGAAGCTGTCATTATGAAGGATCGGACCACAGGCCGTGGTCGTGGCTTCGGCTTCATTGTTTTTGCTGATCCAAGTGTTGCAGATAGAGCTGTGAGGGAGAAGCATAATATTGATGGAAGAATGGTTGAAGCTAAAAGGGCTGTTCCCAGGAATGACCAGAACATTGTAGGTAGAACCAGTGGTAGCATTAATGTTTCTCCAGGCCCCGGACGCACTAGAAAGATATTTGTCGGGGGCTTAGCATCGACTGTTACTGAGAGTGAATTCAAGAACTATTTTGATCAATTTGGGACAATTACAGATGTTGTGGTGATGTATGACCACAATACTCTTCGACCCAGGGGATTCGGGTTTATCACATATGATTCAGAAGAAGCAGTAGAAAAGGTTCTTATCAAGACTTTCCATGAATTGAATGGAAAAATGGTCGAAGTTAAGCGTGCAGTTCCAAAAGAGTTGTCACCAAGCCCTAGCCGTAGCCCACTTAGTGGATTCAATTATGGACAGAGTAGGGTCAATAACTTCCTTAATGGTTACAATCAGGGGTACAGTTCTAGTACAAGTGGAGGCTATGGTGTTAGAATGGATGGTAGATTTAGTCCGGTTTCTAGTGGTCGAAGTGTATTAACCCCATTCGGATCAGGTTTTGGAATGGGAGTGAACTATGAGATTGGCTTAAACCCGGGGTACGGGGGAAGTTCCAATTTCGCCAATAATCTCAACTATGGACGGGGACTGAGCCCTTACTACACTGGTAATTCGGATAGGTTTGGCAATCTAGGGTATGAAAGTGGGAATGGTGGAAACTCATCCTTCTTCAGCTCAGCAACTCAAAACTTGTGGGGAAGTGGAGGGCTGAACAATGGAACAAACTCTGCCAATTCCAATGTTCATTTGGGATCAGCAAGCGGCAGCATTGGAGGAAATGTATTTGCCAATTCCGGAGTTAATTGGGGTAGTTCCGGACTTTCGTCTCAAGGTGGAGCAAATACTGTTTTTAGTAATGCTGGGAATCTTAACTATGGAGGTGTTGATAGTGGTTATAATCTCGGAGCTGGAGGATATGGGAGGAACAGTGGTACTGTCTTGCCTCCAACATCATCATTTCCTACCTCAACTGTTGGTTTTGATGGGCCCTTCGCCGATTTCTACAGTCCTAGTTATGGTGATCCCACGTGGCGATCTTCCAATTTTGAAAGAGATGGATCTGGACCCTTTGGTTATGGACTTGGCAGTGCTGCTTCAGAAGTCTCATCCAGAAGCTCTCCTAGTTTTATTGGTGGCCATAGTGTTAATATGAGGCAGTCAAACAGAGGAAACACTACCTAG

Protein sequence

MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVADRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKRAVPKELSPSPSRSPLSGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSSGRSVLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNLGYESGNGGNSSFFSSATQNLWGSGGLNNGTNSANSNVHLGSASGSIGGNVFANSGVNWGSSGLSSQGGANTVFSNAGNLNYGGVDSGYNLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSPSYGDPTWRSSNFERDGSGPFGYGLGSAASEVSSRSSPSFIGGHSVNMRQSNRGNTT

Homology

[Close]

BLAST of Sed0018178 vs. NCBI nr
Match: XP_008464191.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo])

HSP 1 Score: 870.9 bits (2249), Expect = 5.0e-249
Identity = 441/476 (92.65%), Postives = 458/476 (96.22%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDE+RLKEYF A+G+VVEAVIMKDRTTGRGRGFGFIVFADPSVA
Sbjct: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DR +REKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPSPSRSPLSGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSSGRS 240
           AVPKELSP PSRSPL G+NYGQSRVN+FLNGY QGYSSST GGYGVRMDGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 240

Query: 241 VLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNLGYESGNG 300
           V TPFGSG+GMGVN++IGLNPGYGG+SNFANNLNYGRGLSPYYTGNSDRFGN+GYESGNG
Sbjct: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNSNFANNLNYGRGLSPYYTGNSDRFGNIGYESGNG 300

Query: 301 GNSSFFSSATQNLWGSGGLNNGTNSANSNVHLGSAS-GSIGGNVFANSGVNWGSSGLSSQ 360
           GNSSFFSSATQNLWGSGGLNNGTNSANSN HLGSAS GSIGG  FANSGV+WGSSG+SSQ
Sbjct: 301 GNSSFFSSATQNLWGSGGLNNGTNSANSNAHLGSASGGSIGGTGFANSGVSWGSSGISSQ 360

Query: 361 GGANTVFSNAGNLNYGGVDSGYNLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSP 420
           GG N VFSN+GNLNYGGVDS Y+LGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYS 
Sbjct: 361 GGGNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420

Query: 421 SYGDPTWRSSNFERDGSGPFGYGLGSAASEVSSRSSPSFIGGHSVNMRQSNRGNTT 476
            YGDPTWRSSNFERDGSGPFGYGLGSAAS+VS+RSSP FIGGHSVN RQSNRGNTT
Sbjct: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 476

[Close]

BLAST of Sed0018178 vs. NCBI nr
Match: XP_038901062.1 (heterogeneous nuclear ribonucleoprotein 1 [Benincasa hispida])

HSP 1 Score: 869.0 bits (2244), Expect = 1.9e-248
Identity = 442/476 (92.86%), Postives = 457/476 (96.01%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDEERLKEYF AFG+VVEAVIMKDRTTGRGRGFGFIVFADPSVA
Sbjct: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DR +REKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPSPSRSPLSGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSSGRS 240
           AVPKELSP PSRSPL G+NYGQSRVN+FLNGY QGYSSST GGYGVRMDGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 240

Query: 241 VLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNLGYESGNG 300
           V TPFGSG+GMGVN+EIG+NPGYGGSSNFA+NLNYGRGLSPYYTGNSDRFGN+GY+SGNG
Sbjct: 241 VFTPFGSGYGMGVNFEIGVNPGYGGSSNFASNLNYGRGLSPYYTGNSDRFGNIGYDSGNG 300

Query: 301 GNSSFFSSATQNLWGSGGLNNGTNSANSNVHLGSAS-GSIGGNVFANSGVNWGSSGLSSQ 360
           GNSSFFSSATQNLW SGGLNNGTNSANSN HLGSAS GSIGG  FANSGVNWGSSG+SSQ
Sbjct: 301 GNSSFFSSATQNLWESGGLNNGTNSANSNAHLGSASGGSIGGTAFANSGVNWGSSGISSQ 360

Query: 361 GGANTVFSNAGNLNYGGVDSGYNLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSP 420
           GG N VFSN+GNLNYGGVDS Y+LGAGGYGRNSGTVLPPTSSFP+STVGFDG FADFYS 
Sbjct: 361 GGGNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPSSTVGFDGNFADFYSA 420

Query: 421 SYGDPTWRSSNFERDGSGPFGYGLGSAASEVSSRSSPSFIGGHSVNMRQSNRGNTT 476
           SYGDPTWRSSNFERDGSGPFGYGLGSAAS+VSSRSSP FIGGHSVN RQSNRGNTT
Sbjct: 421 SYGDPTWRSSNFERDGSGPFGYGLGSAASDVSSRSSPGFIGGHSVNRRQSNRGNTT 476

[Close]

BLAST of Sed0018178 vs. NCBI nr
Match: XP_022140537.1 (heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Momordica charantia])

HSP 1 Score: 868.2 bits (2242), Expect = 3.2e-248
Identity = 438/475 (92.21%), Postives = 453/475 (95.37%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDEERLKEYF AFG+VVEAVIMKDRTTGRGRGFGFIVFAD S+A
Sbjct: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGDVVEAVIMKDRTTGRGRGFGFIVFADSSIA 60

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DR +REKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPSPSRSPLSGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSSGRS 240
           AVPKELSP PSRSPL G+NYGQSRVN+FLNGY QGYSSST GGYGVRMDGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 240

Query: 241 VLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNLGYESGNG 300
           V TPFGSG+GMGVN+EIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGN+GY+ GNG
Sbjct: 241 VFTPFGSGYGMGVNFEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNIGYDGGNG 300

Query: 301 GNSSFFSSATQNLWGSGGLNNGTNSANSNVHLGSASGSIGGNVFANSGVNWGSSGLSSQG 360
           GNSSFFSSATQNLWGSGGLNNGTNSA SN HLGSASGSIGG+ FANSGVNW SSG+SSQG
Sbjct: 301 GNSSFFSSATQNLWGSGGLNNGTNSATSNAHLGSASGSIGGSAFANSGVNWSSSGISSQG 360

Query: 361 GANTVFSNAGNLNYGGVDSGYNLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSPS 420
           G + VFSN GNLNYGGVDS Y+LGAGGYGRN+GTVLPPTSSFPTSTVGFDGPFADFYS  
Sbjct: 361 GGSNVFSNTGNLNYGGVDSSYSLGAGGYGRNTGTVLPPTSSFPTSTVGFDGPFADFYSAG 420

Query: 421 YGDPTWRSSNFERDGSGPFGYGLGSAASEVSSRSSPSFIGGHSVNMRQSNRGNTT 476
           YGDPTWRSSNFERDGSGPFGYGLGSAAS+VSSRSSP FIG HSVN RQSNRGNTT
Sbjct: 421 YGDPTWRSSNFERDGSGPFGYGLGSAASDVSSRSSPGFIGAHSVNRRQSNRGNTT 475

[Close]

BLAST of Sed0018178 vs. NCBI nr
Match: TYK11900.1 (heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 865.1 bits (2234), Expect = 2.7e-247
Identity = 438/473 (92.60%), Postives = 455/473 (96.19%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDE+RLKEYF A+G+VVEAVIMKDRTTGRGRGFGFIVFADPSVA
Sbjct: 29  MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 88

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DR +REKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 89  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 148

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 149 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 208

Query: 181 AVPKELSPSPSRSPLSGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSSGRS 240
           AVPKELSP PSRSPL G+NYGQSRVN+FLNGY QGYSSST GGYGVRMDGRFSPVSSGRS
Sbjct: 209 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 268

Query: 241 VLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNLGYESGNG 300
           V TPFGSG+GMGVN++IGLNPGYGG+SNFANNLNYGRGLSPYYTGNSDRFGN+GYESGNG
Sbjct: 269 VFTPFGSGYGMGVNFDIGLNPGYGGNSNFANNLNYGRGLSPYYTGNSDRFGNIGYESGNG 328

Query: 301 GNSSFFSSATQNLWGSGGLNNGTNSANSNVHLGSAS-GSIGGNVFANSGVNWGSSGLSSQ 360
           GNSSFFSSATQNLWGSGGLNNGTNSANSN HLGSAS GSIGG  FANSGV+WGSSG+SSQ
Sbjct: 329 GNSSFFSSATQNLWGSGGLNNGTNSANSNAHLGSASGGSIGGTGFANSGVSWGSSGISSQ 388

Query: 361 GGANTVFSNAGNLNYGGVDSGYNLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSP 420
           GG N VFSN+GNLNYGGVDS Y+LGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYS 
Sbjct: 389 GGGNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 448

Query: 421 SYGDPTWRSSNFERDGSGPFGYGLGSAASEVSSRSSPSFIGGHSVNMRQSNRG 473
            YGDPTWRSSNFERDGSGPFGYGLGSAAS+VS+RSSP FIGGHSVN RQSNRG
Sbjct: 449 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRG 501

[Close]

BLAST of Sed0018178 vs. NCBI nr
Match: XP_004140014.1 (heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN46587.1 hypothetical protein Csa_004914 [Cucumis sativus])

HSP 1 Score: 864.0 bits (2231), Expect = 6.1e-247
Identity = 436/476 (91.60%), Postives = 457/476 (96.01%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDE+RLKEYF A+G+VVEAVIMKDRTTGRGRGFGFIVFADPSVA
Sbjct: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DR +REKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPSPSRSPLSGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSSGRS 240
           AVPKELSP PSRSPL G+NYGQSRVN+FLNGY QGYSSST GGYGVR+DGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS 240

Query: 241 VLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNLGYESGNG 300
           V TPFGSG+GMGVN++IGLNPGYGG+SNFA+NLNYGRGLSPYYTGNSDRFGN+GYESGNG
Sbjct: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNSNFASNLNYGRGLSPYYTGNSDRFGNIGYESGNG 300

Query: 301 GNSSFFSSATQNLWGSGGLNNGTNSANSNVHLGSAS-GSIGGNVFANSGVNWGSSGLSSQ 360
           GNSSFFSS TQNLWGSGGLNNGTNSANSN HLGSA+ GS+GG  FANSGV+WGSSG+SSQ
Sbjct: 301 GNSSFFSSETQNLWGSGGLNNGTNSANSNAHLGSATGGSVGGTGFANSGVSWGSSGISSQ 360

Query: 361 GGANTVFSNAGNLNYGGVDSGYNLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSP 420
           GG N VFSN+GNLNYGGVDS Y+LGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYS 
Sbjct: 361 GGGNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420

Query: 421 SYGDPTWRSSNFERDGSGPFGYGLGSAASEVSSRSSPSFIGGHSVNMRQSNRGNTT 476
            YGDPTWRSSNFERDGSGPFGYGLGSAAS+VS+RSSP FIGGHSVN RQSNRGNTT
Sbjct: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 476

[Close]

BLAST of Sed0018178 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 3.0e-63
Identity = 171/408 (41.91%), Postives = 237/408 (58.09%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           M +D GKLFVGGISW+TDE++L+E+F  +GEV +A++M+D+ TGR RGFGF++F+DPSV 
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPG-----RTRKIFVGGLAS 120
           DR ++EKH+ID R V+ KRA+ R +Q + GRT G++N S   G     +T+KIFVGGL  
Sbjct: 61  DRVLQEKHSIDTREVDVKRAMSREEQQVSGRT-GNLNTSRSSGGDAYNKTKKIFVGGLPP 120

Query: 121 TVTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKM 180
           T+T+ EF+ YF+ +G +TDV +MYD  T RPRGFGF+++DSE+AV+ VL KTFH+L+GK 
Sbjct: 121 TLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQ 180

Query: 181 VEVKRAVPKELSPSPSRSPLSGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMD-GRFSP 240
           VEVKRA+PK+ +P      + G   G         GY QGY  + S  Y  RMD  RF  
Sbjct: 181 VEVKRALPKDANPGGGGRSMGGGGSG---------GY-QGYGGNES-SYDGRMDSNRFLQ 240

Query: 241 VSSGRSVLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFG--- 300
             S  + L  +GS          G   GYG  SN A    YG      YTG++  +G   
Sbjct: 241 HQSVGNGLPSYGSS---------GYGAGYGNGSNGAGYGAYGG-----YTGSAGGYGAGA 300

Query: 301 NLGYESGNGGNSSFFSS---ATQNLW------GSGGLNNGTNSANSNVHL-GSASGSIGG 360
             GY + N   + + SS   A +N W      G G    G+ +A+S   + G+A  +   
Sbjct: 301 TAGYGATNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPPTQSP 360

Query: 361 NVFANSGVNWGS-SGLSSQGGANTVFSNAGNLNYGGVDSGYNLGAGGY 389
           + ++N G  +G  SG  S  G    +   G    GG     N G+GGY
Sbjct: 361 SGYSNQGYGYGGYSGSDSGYGNQAAYGVVGGRPSGG--GSNNPGSGGY 380

[Close]

BLAST of Sed0018178 vs. ExPASy Swiss-Prot
Match: Q9C652 (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.3e-46
Identity = 97/199 (48.74%), Postives = 135/199 (67.84%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           M  D  KLFVGGI+ +T EE LK+YF  +G V+EAV+ K++ TG+ RGFGF+ FA+    
Sbjct: 1   MDYDRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDV 60

Query: 61  DRAVREKHNIDGRMVEAKRAVPRND-----------QNIVGRTSGSINVSPGPG---RTR 120
            +A+R+ H I G+ V+ ++A+ +++           +  V + +G +      G   RT+
Sbjct: 61  VKALRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTK 120

Query: 121 KIFVGGLASTVTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIK 180
           KIFVGGL+S  TE EFK+YF++FG  TDVVVM+D  T RPRGFGF+TYDSE++VE V+  
Sbjct: 121 KIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQS 180

Query: 181 TFHELNGKMVEVKRAVPKE 186
            FHEL+ K VEVKRA+PKE
Sbjct: 181 NFHELSDKRVEVKRAIPKE 199

[Close]

BLAST of Sed0018178 vs. ExPASy Swiss-Prot
Match: O94432 (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC660.15 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.4e-44
Identity = 78/181 (43.09%), Postives = 123/181 (67.96%), Query Frame = 0


Query: 4   DSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVADRA 63
           + GK+F+GG++W+T ++ L++YF  FGEV++  +M+D TTGR RGFGF+ F +P   +  
Sbjct: 161 EDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEV 220

Query: 64  VREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTESEFK 123
           + ++H++DG++++ KRA+PR +Q                 +T K+FVGG+    TE EF+
Sbjct: 221 MSKEHHLDGKIIDPKRAIPREEQE----------------KTAKMFVGGVPGDCTEEEFR 280

Query: 124 NYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKRAVP 183
           N+F+QFG + D  +M D +T RPRGFGF+TY++E AVE  + + +  ++GK VEVKRA P
Sbjct: 281 NFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPYITIHGKPVEVKRATP 325

Query: 184 K 185
           K
Sbjct: 341 K 325

[Close]

BLAST of Sed0018178 vs. ExPASy Swiss-Prot
Match: Q99383 (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=HRP1 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 4.0e-44
Identity = 94/235 (40.00%), Postives = 141/235 (60.00%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           +  +S K+F+GG++WDT E+ L+EYFG +G V +  IMKD  TGR RGFGF+ F  PS  
Sbjct: 154 LSKESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 213

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           D  V+ +H +DG++++ KRA+PR++Q+                +T KIFVGG+   V   
Sbjct: 214 DEVVKTQHILDGKVIDPKRAIPRDEQD----------------KTGKIFVGGIGPDVRPK 273

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EF+ +F Q+GTI D  +M D +T + RGFGF+TYDS +AV++V    F +   + +E+KR
Sbjct: 274 EFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKR 333

Query: 181 AVPKELSPSPSRSPLSGFNYGQSRVN----NFLN--GYNQGYSSSTSGGYGVRMD 230
           A P+ +     +S  +G N G + +N    NF N   +NQ Y +   GGY   M+
Sbjct: 334 AEPRHMQ---QKSSNNGGNNGGNNMNRRGGNFGNQGDFNQMYQNPMMGGYNPMMN 369

[Close]

BLAST of Sed0018178 vs. ExPASy Swiss-Prot
Match: Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-43
Identity = 86/184 (46.74%), Postives = 122/184 (66.30%), Query Frame = 0


Query: 4   DSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVADRA 63
           D GK+F+GG+SW T  E L++YFG +G++ EA++MKD TT R RGFGF+ F+DP+  D+ 
Sbjct: 27  DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKV 86

Query: 64  VRE-KHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTESEF 123
           + +  H +DG+ V+ K A PR     +              RT+KIFVGGL++  T  + 
Sbjct: 87  LTQGTHELDGKKVDPKVAFPRRAHPKM------------VTRTKKIFVGGLSAPTTLEDV 146

Query: 124 KNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKRAV 183
           K+YF+QFG I D ++M+D  T R RGFGF+T+ SE+ V+KV    FHE+N KMVE K+A 
Sbjct: 147 KSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQ 198

Query: 184 PKEL 187
           PKE+
Sbjct: 207 PKEV 198

[Close]

BLAST of Sed0018178 vs. ExPASy TrEMBL
Match: A0A1S3CKY6 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103502128 PE=4 SV=1)

HSP 1 Score: 870.9 bits (2249), Expect = 2.4e-249
Identity = 441/476 (92.65%), Postives = 458/476 (96.22%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDE+RLKEYF A+G+VVEAVIMKDRTTGRGRGFGFIVFADPSVA
Sbjct: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DR +REKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPSPSRSPLSGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSSGRS 240
           AVPKELSP PSRSPL G+NYGQSRVN+FLNGY QGYSSST GGYGVRMDGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 240

Query: 241 VLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNLGYESGNG 300
           V TPFGSG+GMGVN++IGLNPGYGG+SNFANNLNYGRGLSPYYTGNSDRFGN+GYESGNG
Sbjct: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNSNFANNLNYGRGLSPYYTGNSDRFGNIGYESGNG 300

Query: 301 GNSSFFSSATQNLWGSGGLNNGTNSANSNVHLGSAS-GSIGGNVFANSGVNWGSSGLSSQ 360
           GNSSFFSSATQNLWGSGGLNNGTNSANSN HLGSAS GSIGG  FANSGV+WGSSG+SSQ
Sbjct: 301 GNSSFFSSATQNLWGSGGLNNGTNSANSNAHLGSASGGSIGGTGFANSGVSWGSSGISSQ 360

Query: 361 GGANTVFSNAGNLNYGGVDSGYNLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSP 420
           GG N VFSN+GNLNYGGVDS Y+LGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYS 
Sbjct: 361 GGGNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420

Query: 421 SYGDPTWRSSNFERDGSGPFGYGLGSAASEVSSRSSPSFIGGHSVNMRQSNRGNTT 476
            YGDPTWRSSNFERDGSGPFGYGLGSAAS+VS+RSSP FIGGHSVN RQSNRGNTT
Sbjct: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 476

[Close]

BLAST of Sed0018178 vs. ExPASy TrEMBL
Match: A0A6J1CH94 (heterogeneous nuclear ribonucleoprotein 1 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011174 PE=4 SV=1)

HSP 1 Score: 868.2 bits (2242), Expect = 1.6e-248
Identity = 438/475 (92.21%), Postives = 453/475 (95.37%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDEERLKEYF AFG+VVEAVIMKDRTTGRGRGFGFIVFAD S+A
Sbjct: 1   MQTDSGKLFVGGISWDTDEERLKEYFSAFGDVVEAVIMKDRTTGRGRGFGFIVFADSSIA 60

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DR +REKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPSPSRSPLSGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSSGRS 240
           AVPKELSP PSRSPL G+NYGQSRVN+FLNGY QGYSSST GGYGVRMDGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 240

Query: 241 VLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNLGYESGNG 300
           V TPFGSG+GMGVN+EIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGN+GY+ GNG
Sbjct: 241 VFTPFGSGYGMGVNFEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNIGYDGGNG 300

Query: 301 GNSSFFSSATQNLWGSGGLNNGTNSANSNVHLGSASGSIGGNVFANSGVNWGSSGLSSQG 360
           GNSSFFSSATQNLWGSGGLNNGTNSA SN HLGSASGSIGG+ FANSGVNW SSG+SSQG
Sbjct: 301 GNSSFFSSATQNLWGSGGLNNGTNSATSNAHLGSASGSIGGSAFANSGVNWSSSGISSQG 360

Query: 361 GANTVFSNAGNLNYGGVDSGYNLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSPS 420
           G + VFSN GNLNYGGVDS Y+LGAGGYGRN+GTVLPPTSSFPTSTVGFDGPFADFYS  
Sbjct: 361 GGSNVFSNTGNLNYGGVDSSYSLGAGGYGRNTGTVLPPTSSFPTSTVGFDGPFADFYSAG 420

Query: 421 YGDPTWRSSNFERDGSGPFGYGLGSAASEVSSRSSPSFIGGHSVNMRQSNRGNTT 476
           YGDPTWRSSNFERDGSGPFGYGLGSAAS+VSSRSSP FIG HSVN RQSNRGNTT
Sbjct: 421 YGDPTWRSSNFERDGSGPFGYGLGSAASDVSSRSSPGFIGAHSVNRRQSNRGNTT 475

[Close]

BLAST of Sed0018178 vs. ExPASy TrEMBL
Match: A0A5D3CKF6 (Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00630 PE=4 SV=1)

HSP 1 Score: 865.1 bits (2234), Expect = 1.3e-247
Identity = 438/473 (92.60%), Postives = 455/473 (96.19%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDE+RLKEYF A+G+VVEAVIMKDRTTGRGRGFGFIVFADPSVA
Sbjct: 29  MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 88

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DR +REKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 89  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 148

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 149 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 208

Query: 181 AVPKELSPSPSRSPLSGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSSGRS 240
           AVPKELSP PSRSPL G+NYGQSRVN+FLNGY QGYSSST GGYGVRMDGRFSPVSSGRS
Sbjct: 209 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 268

Query: 241 VLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNLGYESGNG 300
           V TPFGSG+GMGVN++IGLNPGYGG+SNFANNLNYGRGLSPYYTGNSDRFGN+GYESGNG
Sbjct: 269 VFTPFGSGYGMGVNFDIGLNPGYGGNSNFANNLNYGRGLSPYYTGNSDRFGNIGYESGNG 328

Query: 301 GNSSFFSSATQNLWGSGGLNNGTNSANSNVHLGSAS-GSIGGNVFANSGVNWGSSGLSSQ 360
           GNSSFFSSATQNLWGSGGLNNGTNSANSN HLGSAS GSIGG  FANSGV+WGSSG+SSQ
Sbjct: 329 GNSSFFSSATQNLWGSGGLNNGTNSANSNAHLGSASGGSIGGTGFANSGVSWGSSGISSQ 388

Query: 361 GGANTVFSNAGNLNYGGVDSGYNLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSP 420
           GG N VFSN+GNLNYGGVDS Y+LGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYS 
Sbjct: 389 GGGNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 448

Query: 421 SYGDPTWRSSNFERDGSGPFGYGLGSAASEVSSRSSPSFIGGHSVNMRQSNRG 473
            YGDPTWRSSNFERDGSGPFGYGLGSAAS+VS+RSSP FIGGHSVN RQSNRG
Sbjct: 449 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRG 501

[Close]

BLAST of Sed0018178 vs. ExPASy TrEMBL
Match: A0A0A0KDX2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110300 PE=4 SV=1)

HSP 1 Score: 864.0 bits (2231), Expect = 2.9e-247
Identity = 436/476 (91.60%), Postives = 457/476 (96.01%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDE+RLKEYF A+G+VVEAVIMKDRTTGRGRGFGFIVFADPSVA
Sbjct: 1   MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DR +REKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 61  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180

Query: 181 AVPKELSPSPSRSPLSGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSSGRS 240
           AVPKELSP PSRSPL G+NYGQSRVN+FLNGY QGYSSST GGYGVR+DGRFSPVSSGRS
Sbjct: 181 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRVDGRFSPVSSGRS 240

Query: 241 VLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNLGYESGNG 300
           V TPFGSG+GMGVN++IGLNPGYGG+SNFA+NLNYGRGLSPYYTGNSDRFGN+GYESGNG
Sbjct: 241 VFTPFGSGYGMGVNFDIGLNPGYGGNSNFASNLNYGRGLSPYYTGNSDRFGNIGYESGNG 300

Query: 301 GNSSFFSSATQNLWGSGGLNNGTNSANSNVHLGSAS-GSIGGNVFANSGVNWGSSGLSSQ 360
           GNSSFFSS TQNLWGSGGLNNGTNSANSN HLGSA+ GS+GG  FANSGV+WGSSG+SSQ
Sbjct: 301 GNSSFFSSETQNLWGSGGLNNGTNSANSNAHLGSATGGSVGGTGFANSGVSWGSSGISSQ 360

Query: 361 GGANTVFSNAGNLNYGGVDSGYNLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSP 420
           GG N VFSN+GNLNYGGVDS Y+LGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYS 
Sbjct: 361 GGGNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSA 420

Query: 421 SYGDPTWRSSNFERDGSGPFGYGLGSAASEVSSRSSPSFIGGHSVNMRQSNRGNTT 476
            YGDPTWRSSNFERDGSGPFGYGLGSAAS+VS+RSSP FIGGHSVN RQSNRGNTT
Sbjct: 421 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRGNTT 476

[Close]

BLAST of Sed0018178 vs. ExPASy TrEMBL
Match: A0A5A7TS95 (Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G005890 PE=4 SV=1)

HSP 1 Score: 863.6 bits (2230), Expect = 3.8e-247
Identity = 437/473 (92.39%), Postives = 454/473 (95.98%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQTDSGKLFVGGISWDTDE+RLKEYF A+G+VVEAVIMKDRTTGRGRGFGFIVFADPSVA
Sbjct: 26  MQTDSGKLFVGGISWDTDEDRLKEYFNAYGDVVEAVIMKDRTTGRGRGFGFIVFADPSVA 85

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           DR +REKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES
Sbjct: 86  DRVIREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 145

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR
Sbjct: 146 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 205

Query: 181 AVPKELSPSPSRSPLSGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSSGRS 240
           AVPKELSP PSRSPL G+NYGQSRVN+FLNGY QGYSSST GGYGVRMDGRFSPVSSGRS
Sbjct: 206 AVPKELSPGPSRSPLGGYNYGQSRVNSFLNGYTQGYSSSTIGGYGVRMDGRFSPVSSGRS 265

Query: 241 VLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNLGYESGNG 300
           V TPFGSG+GMGVN++IGLNPGYGG+SNFANNLNYGRGLSPYYTGNSDRFGN+GYESGNG
Sbjct: 266 VFTPFGSGYGMGVNFDIGLNPGYGGNSNFANNLNYGRGLSPYYTGNSDRFGNIGYESGNG 325

Query: 301 GNSSFFSSATQNLWGSGGLNNGTNSANSNVHLGSAS-GSIGGNVFANSGVNWGSSGLSSQ 360
           GNSSFFSSATQNLWGSGGLNNGTNSANSN HLGSAS GSIGG  FANSGV+WGSSG+SSQ
Sbjct: 326 GNSSFFSSATQNLWGSGGLNNGTNSANSNAHLGSASGGSIGGTGFANSGVSWGSSGISSQ 385

Query: 361 GGANTVFSNAGNLNYGGVDSGYNLGAGGYGRNSGTVLPPTSSFPTSTVGFDGPFADFYSP 420
           GG N VFSN+GNLNYGGVDS Y+LGAGGYGRNSGT LPPTSSFPTSTVGFDGPFADFYS 
Sbjct: 386 GGGNNVFSNSGNLNYGGVDSSYSLGAGGYGRNSGTALPPTSSFPTSTVGFDGPFADFYSA 445

Query: 421 SYGDPTWRSSNFERDGSGPFGYGLGSAASEVSSRSSPSFIGGHSVNMRQSNRG 473
            YGDPTWRSSNFERDGSGPFGYGLGSAAS+VS+RSSP FIGGHSVN RQSNRG
Sbjct: 446 GYGDPTWRSSNFERDGSGPFGYGLGSAASDVSARSSPGFIGGHSVNRRQSNRG 498

[Close]

BLAST of Sed0018178 vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 546.6 bits (1407), Expect = 2.0e-155
Identity = 312/498 (62.65%), Postives = 374/498 (75.10%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQ+D+GKLF+GGISWDT+EERLKEYF +FGEV+EAVI+KDRTTGR RGFGF+VFADP+VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRT-SGSINVSP-GPGRTRKIFVGGLASTVT 120
           +  + EKHNIDGR+VEAK+AVPR+DQN+V R+ S SI  SP GPGRTRKIFVGGL S+VT
Sbjct: 61  EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120

Query: 121 ESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEV 180
           ES+FK YF+QFGT TDVVVMYDHNT RPRGFGFITYDSEEAVEKVL+KTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180

Query: 181 KRAVPKELSPSPSRSPL-SGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSS 240
           KRAVPKELSP PSRSPL +G++YG +RVNN LNGY QG++ +  GGYG+RMDGRFSPV +
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240

Query: 241 GRSVLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFG-NLGYE 300
           GRS    + SG+GM VN++ GL  G+ G +N+  N++YGRG+SPYY GN++RFG  +GYE
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE 300

Query: 301 SGN-GGNSSFFSSATQNLWG-SGGLNNGTNSANSNVHLGSASGSIGGNV----FANSGVN 360
            GN GGNSSFFSS T+NLWG +GGLN   N+ NSN +      S G N     F NSGVN
Sbjct: 301 GGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVN 360

Query: 361 WGSSGLSSQGGANTVFSNAGNLNYGG-VDSGYNLGAGGY-GRNSG-TVLPPTSSF----P 420
           WG+ G    GG N V +      YGG  +SG+ LG GGY  RN G     P+SSF     
Sbjct: 361 WGAPG----GGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASA 420

Query: 421 TSTVGFD-GPFADFYSPS--YGDPTWRSSNFERDGSGPFGYGLGSA--ASEVSSR-SSPS 476
           T+  G+D    A+FY     Y DPTWRS   E +G  PF YG+G    +S+VS+R SSP 
Sbjct: 421 TNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPG 480

[Close]

BLAST of Sed0018178 vs. TAIR 10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 546.6 bits (1407), Expect = 2.0e-155
Identity = 311/495 (62.83%), Postives = 373/495 (75.35%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           MQ+D+GKLF+GGISWDT+EERLKEYF +FGEV+EAVI+KDRTTGR RGFGF+VFADP+VA
Sbjct: 1   MQSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVA 60

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRT-SGSINVSP-GPGRTRKIFVGGLASTVT 120
           +  + EKHNIDGR+VEAK+AVPR+DQN+V R+ S SI  SP GPGRTRKIFVGGL S+VT
Sbjct: 61  EIVITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVT 120

Query: 121 ESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEV 180
           ES+FK YF+QFGT TDVVVMYDHNT RPRGFGFITYDSEEAVEKVL+KTFHELNGKMVEV
Sbjct: 121 ESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEV 180

Query: 181 KRAVPKELSPSPSRSPL-SGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSS 240
           KRAVPKELSP PSRSPL +G++YG +RVNN LNGY QG++ +  GGYG+RMDGRFSPV +
Sbjct: 181 KRAVPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGA 240

Query: 241 GRSVLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFG-NLGYE 300
           GRS    + SG+GM VN++ GL  G+ G +N+  N++YGRG+SPYY GN++RFG  +GYE
Sbjct: 241 GRSGFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFGPAVGYE 300

Query: 301 SGN-GGNSSFFSSATQNLWG-SGGLNNGTNSANSNVHLGSASGSIGGNV----FANSGVN 360
            GN GGNSSFFSS T+NLWG +GGLN   N+ NSN +      S G N     F NSGVN
Sbjct: 301 GGNGGGNSSFFSSVTRNLWGNNGGLNYNNNNTNSNSNTYMGGSSSGNNTLSGPFGNSGVN 360

Query: 361 WGSSGLSSQGGANTVFSNAGNLNYGG-VDSGYNLGAGGY-GRNSG-TVLPPTSSF----P 420
           WG+ G    GG N V +      YGG  +SG+ LG GGY  RN G     P+SSF     
Sbjct: 361 WGAPG----GGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASA 420

Query: 421 TSTVGFD-GPFADFYSPS--YGDPTWRSSNFERDGSGPFGYGLGSA--ASEVSSR-SSPS 473
           T+  G+D    A+FY     Y DPTWRS   E +G  PF YG+G    +S+VS+R SSP 
Sbjct: 421 TNNTGYDTAGLAEFYGNGAVYSDPTWRSPTPETEGPAPFSYGIGGGVPSSDVSARSSSPG 480

[Close]

BLAST of Sed0018178 vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 354.0 bits (907), Expect = 1.9e-97
Identity = 233/496 (46.98%), Postives = 311/496 (62.70%), Query Frame = 0


Query: 3   TDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVADR 62
           +D GKLF+GGISWDTDEERL+EYFG +G++VEAVIM+DRTTGR RGFGFIVFADPSVA+R
Sbjct: 12  SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 71

Query: 63  AVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSIN-VSP------GPGRTRKIFVGGLAS 122
            + +KH IDGR VEAK+AVPR+DQ ++ R +  ++ +SP      G  RT+KIFVGGL S
Sbjct: 72  VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 131

Query: 123 TVTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKM 182
           ++TE+EFKNYFDQFGTI DVVVMYDHNT RPRGFGFIT+DSEE+V+ VL KTFHELNGKM
Sbjct: 132 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 191

Query: 183 VEVKRAVPKEL-SPSPSRSPLSGF--NYG----QSRVNNFLNGYNQGYSSSTSGGYGVRM 242
           VEVKRAVPKEL S +P+RSPL G+  NYG    +S  N++ N +  GY+++  G      
Sbjct: 192 VEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGS----- 251

Query: 243 DGRFSPVSSGRSVLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGR--GLSPYYTGN 302
            GRFSP+ SGR+      S FG+G+N E+ LN  + G     N L Y R  G   + + +
Sbjct: 252 AGRFSPIGSGRNAF----SSFGLGLNQELNLNSNFDG-----NTLGYSRIPGNQYFNSAS 311

Query: 303 SDRFGN-LGYESGNGGNSSFFSSATQNLWGSGGLNNGTNSANSNVHLGSASGSIGGNVFA 362
            +R+ + +GY  G+    S ++ + ++LWG     N ++S+    +LG + G        
Sbjct: 312 PNRYNSPIGYNRGD----SAYNPSNRDLWG-----NRSDSSGPGWNLGVSVG-------- 371

Query: 363 NSGVNWGSSGLSSQGGANTVFSNAGNLNYGGVDSGYNLGAGGYGRNSGTVLPPTSSFPTS 422
           N+  NWG S + S            N  YG     Y  G+G  G           SF  +
Sbjct: 372 NNRGNWGLSSVVSD-----------NNGYG---RSYGAGSGLSG----------LSFAGN 431

Query: 423 TVGFDGPFADFY--SPSYGDPTWR------SSNFERDG-SGPFGYGLGSAASEVSSRSSP 473
           T GFDG   + Y  S  Y D TW+       S+ E DG S  +G+G+ +  S+ S+ +S 
Sbjct: 432 TNGFDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSANASE 452

[Close]

BLAST of Sed0018178 vs. TAIR 10
Match: AT4G26650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 354.0 bits (907), Expect = 1.9e-97
Identity = 233/496 (46.98%), Postives = 311/496 (62.70%), Query Frame = 0


Query: 3   TDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVADR 62
           +D GKLF+GGISWDTDEERL+EYFG +G++VEAVIM+DRTTGR RGFGFIVFADPSVA+R
Sbjct: 9   SDLGKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAER 68

Query: 63  AVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSIN-VSP------GPGRTRKIFVGGLAS 122
            + +KH IDGR VEAK+AVPR+DQ ++ R +  ++ +SP      G  RT+KIFVGGL S
Sbjct: 69  VIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASPMHLISPSHGGNGGGARTKKIFVGGLPS 128

Query: 123 TVTESEFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKM 182
           ++TE+EFKNYFDQFGTI DVVVMYDHNT RPRGFGFIT+DSEE+V+ VL KTFHELNGKM
Sbjct: 129 SITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFHELNGKM 188

Query: 183 VEVKRAVPKEL-SPSPSRSPLSGF--NYG----QSRVNNFLNGYNQGYSSSTSGGYGVRM 242
           VEVKRAVPKEL S +P+RSPL G+  NYG    +S  N++ N +  GY+++  G      
Sbjct: 189 VEVKRAVPKELSSTTPNRSPLIGYGNNYGVVPNRSSANSYFNSFPPGYNNNNLGS----- 248

Query: 243 DGRFSPVSSGRSVLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGR--GLSPYYTGN 302
            GRFSP+ SGR+      S FG+G+N E+ LN  + G     N L Y R  G   + + +
Sbjct: 249 AGRFSPIGSGRNAF----SSFGLGLNQELNLNSNFDG-----NTLGYSRIPGNQYFNSAS 308

Query: 303 SDRFGN-LGYESGNGGNSSFFSSATQNLWGSGGLNNGTNSANSNVHLGSASGSIGGNVFA 362
            +R+ + +GY  G+    S ++ + ++LWG     N ++S+    +LG + G        
Sbjct: 309 PNRYNSPIGYNRGD----SAYNPSNRDLWG-----NRSDSSGPGWNLGVSVG-------- 368

Query: 363 NSGVNWGSSGLSSQGGANTVFSNAGNLNYGGVDSGYNLGAGGYGRNSGTVLPPTSSFPTS 422
           N+  NWG S + S            N  YG     Y  G+G  G           SF  +
Sbjct: 369 NNRGNWGLSSVVSD-----------NNGYG---RSYGAGSGLSG----------LSFAGN 428

Query: 423 TVGFDGPFADFY--SPSYGDPTWR------SSNFERDG-SGPFGYGLGSAASEVSSRSSP 473
           T GFDG   + Y  S  Y D TW+       S+ E DG S  +G+G+ +  S+ S+ +S 
Sbjct: 429 TNGFDGSIGELYRGSSVYSDSTWQQSMPHHQSSNELDGLSRSYGFGIDNVGSDPSANASE 449

[Close]

BLAST of Sed0018178 vs. TAIR 10
Match: AT5G47620.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 343.2 bits (879), Expect = 3.3e-94
Identity = 200/395 (50.63%), Postives = 266/395 (67.34%), Query Frame = 0


Query: 1   MQTDSGKLFVGGISWDTDEERLKEYFGAFGEVVEAVIMKDRTTGRGRGFGFIVFADPSVA 60
           M+ +S KLF+GGISW+T E+RL++YF +FGEV+EAVIMKDR TGR RGFGF+VFADP+VA
Sbjct: 1   MEMESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVA 60

Query: 61  DRAVREKHNIDGRMVEAKRAVPRNDQNIVGRTSGSINVSPGPGRTRKIFVGGLASTVTES 120
           +R V  KH IDG++VEAK+AVPR+D  +  +++ S+  SPGP  ++KIFVGGLAS+VTE+
Sbjct: 61  ERVVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEA 120

Query: 121 EFKNYFDQFGTITDVVVMYDHNTLRPRGFGFITYDSEEAVEKVLIKTFHELNGKMVEVKR 180
           EFK YF QFG ITDVVVMYDH T RPRGFGFI+YDSEEAV+KVL KTFHELNGKMVEVK 
Sbjct: 121 EFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKL 180

Query: 181 AVPKELSPSPSRSPLSGFNYGQSRVNNFLNGYNQGYSSSTSGGYGVRMDGRFSPVSSGRS 240
           AVPK+++ +  R+ ++  ++G SR+++ LN Y QG+S S   GYGV+ + R+SP    R 
Sbjct: 181 AVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRG 240

Query: 241 VLTPFGSGFGMGVNYEIGLNPGYGGSSNFANNLNYGRGLSPYYTGNSDRFGNLGYESGNG 300
             +PFG G+G+ +N+E      YG  S+      +GR  SP Y  +  RFG+   ESG  
Sbjct: 241 GFSPFGHGYGIELNFEPNQTQNYGSGSSG----GFGRPFSPGYAASLGRFGS-QMESGGA 300

Query: 301 --GNSSFFSSATQN-LWGSGGLNNGTNSANSNVHLGSASGSIGGNVFANSGVNWGSSGLS 360
             GN S  ++A +N LWG+GGL      +NS +   S SG+ G +   + G NWG+    
Sbjct: 301 SVGNGSVLNAAPKNHLWGNGGLG---YMSNSPISRSSFSGNSGMSSLGSIGDNWGTV--- 360

Query: 361 SQGGANTVFSNAGNLNYGGVDSGYNLGAGGYGRNS 393
               A    S  G     G+++   +  GGY   S
Sbjct: 361 ----ARARSSYHGERGGVGLEAMRGVHVGGYSSGS 380

The following BLAST results are available for this feature:

BLAST of Sed0018178 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464191.1	5.0e-249	92.65	PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo]	[more]
XP_038901062.1	1.9e-248	92.86	heterogeneous nuclear ribonucleoprotein 1 [Benincasa hispida]	[more]
XP_022140537.1	3.2e-248	92.21	heterogeneous nuclear ribonucleoprotein 1 isoform X1 [Momordica charantia]	[more]
TYK11900.1	2.7e-247	92.60	heterogeneous nuclear ribonucleoprotein 1 [Cucumis melo var. makuwa]	[more]
XP_004140014.1	6.1e-247	91.60	heterogeneous nuclear ribonucleoprotein 1 [Cucumis sativus] >KGN46587.1 hypothet...	[more]

BLAST of Sed0018178 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W034	3.0e-63	41.91	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
Q9C652	3.3e-46	48.74	RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1	[more]
O94432	2.4e-44	43.09	Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain...	[more]
Q99383	4.0e-44	40.00	Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae (strain...	[more]
Q9VVE5	1.2e-43	46.74	RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R...	[more]

BLAST of Sed0018178 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKY6	2.4e-249	92.65	heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10350212...	[more]
A0A6J1CH94	1.6e-248	92.21	heterogeneous nuclear ribonucleoprotein 1 isoform X1 OS=Momordica charantia OX=3...	[more]
A0A5D3CKF6	1.3e-247	92.60	Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A0A0KDX2	2.9e-247	91.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G110300 PE=4 SV=1	[more]
A0A5A7TS95	3.8e-247	92.39	Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of Sed0018178 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07810.1	2.0e-155	62.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G07810.2	2.0e-155	62.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.1	1.9e-97	46.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.2	1.9e-97	46.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G47620.1	3.3e-94	50.63	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 107..179 e-value: 7.0E-23 score: 92.0 coord: 7..78 e-value: 5.6E-25 score: 99.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 8..69 e-value: 1.6E-16 score: 59.9 coord: 108..165 e-value: 7.3E-15 score: 54.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 106..183 score: 17.523457
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 6..82 score: 17.762232
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 103..190 e-value: 2.2E-25 score: 90.7
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..88 e-value: 2.4E-27 score: 97.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 452..475
None	No IPR available	PANTHER	PTHR48032:SF1	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE	coord: 1..474
None	No IPR available	PANTHER	PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	coord: 1..474
None	No IPR available	CDD	cd12325	RRM1_hnRNPA_hnRNPD_like	coord: 8..78 e-value: 2.43718E-36 score: 126.932
IPR034131	DAZ-associated protein 1, RNA recognition motif 2	CDD	cd12327	RRM2_DAZAP1	coord: 104..183 e-value: 1.24213E-44 score: 149.053
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 105..269
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 3..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0018178.1	Sed0018178.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding