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Sed0018176 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TACACAGCCTCCAATAATCCCACTCTCTTTTAGCAGCTTTAGAGGCCAAAAAAAAAAAAAGAAAAGAGAGAGCATAATTGGGAGTGATTAATTAGAGACAAAGTGGGGTTTAATTAGTTCAAATAAGTTTATTTATGGGTGGAAGATCAAAGTCAATGAAGTGTTTTTCCATTTGCAACATATTGAAAAGTTGCTGTTTTCCAATGGGAGGAAGGGATGAACAAGGCTACAATAATTTGGATGAAAGTGCTGAAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATCGAAGATGGGTTGCCGAGCCCGGAATTGATCGCAAAGCTTCTGCTTTCATTCAAAGATTTTACGAGTCTCGGGTTTCGGATCCTCAACGCCAAACCCTTTCTTCGGTTTGAGTAGTACTCCTTTAATCCTTTTCGTGGTTCGGTCGAGTTGAGTTGAGTTGGGTTTTGGCAGAGCT TACACAGCCTCCAATAATCCCACTCTCTTTTAGCAGCTTTAGAGGCCAAAAAAAAAAAAAGAAAAGAGAGAGCATAATTGGGAGTGATTAATTAGAGACAAAGTGGGGTTTAATTAGTTCAAATAAGTTTATTTATGGGTGGAAGATCAAAGTCAATGAAGTGTTTTTCCATTTGCAACATATTGAAAAGTTGCTGTTTTCCAATGGGAGGAAGGGATGAACAAGGCTACAATAATTTGGATGAAAGTGCTGAAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATCGAAGATGGGTTGCCGAGCCCGGAATTGATCGCAAAGCTTCTGCTTTCATTCAAAGATTTTACGAGTCTCGGGTTTCGGATCCTCAACGCCAAACCCTTTCTTCGGTTTGAGTAGTACTCCTTTAATCCTTTTCGTGGTTCGGTCGAGTTGAGTTGAGTTGGGTTTTGGCAGAGCT ATGGGTGGAAGATCAAAGTCAATGAAGTGTTTTTCCATTTGCAACATATTGAAAAGTTGCTGTTTTCCAATGGGAGGAAGGGATGAACAAGGCTACAATAATTTGGATGAAAGTGCTGAAATTAGAAGAAGGATGTGGCCAAGTGATGAAGATCGAAGATGGGTTGCCGAGCCCGGAATTGATCGCAAAGCTTCTGCTTTCATTCAAAGATTTTACGAGTCTCGGGTTTCGGATCCTCAACGCCAAACCCTTTCTTCGGTTTGA MGGRSKSMKCFSICNILKSCCFPMGGRDEQGYNNLDESAEIRRRMWPSDEDRRWVAEPGIDRKASAFIQRFYESRVSDPQRQTLSSV Homology
BLAST of Sed0018176 vs. NCBI nr
Match: KAG7029045.1 (hypothetical protein SDJN02_10228, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 145.6 bits (366), Expect = 2.0e-31 Identity = 71/85 (83.53%), Postives = 75/85 (88.24%), Query Frame = 0
BLAST of Sed0018176 vs. NCBI nr
Match: XP_022935735.1 (uncharacterized protein LOC111442555 [Cucurbita moschata] >XP_023540304.1 uncharacterized protein LOC111800720 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 144.4 bits (363), Expect = 4.5e-31 Identity = 70/85 (82.35%), Postives = 75/85 (88.24%), Query Frame = 0
BLAST of Sed0018176 vs. NCBI nr
Match: XP_022138231.1 (uncharacterized protein LOC111009454 [Momordica charantia]) HSP 1 Score: 141.7 bits (356), Expect = 2.9e-30 Identity = 70/86 (81.40%), Postives = 74/86 (86.05%), Query Frame = 0
BLAST of Sed0018176 vs. NCBI nr
Match: KAG6582136.1 (hypothetical protein SDJN03_22138, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 133.7 bits (335), Expect = 7.9e-28 Identity = 69/89 (77.53%), Postives = 76/89 (85.39%), Query Frame = 0
BLAST of Sed0018176 vs. NCBI nr
Match: KAG6597601.1 (hypothetical protein SDJN03_10781, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 131.7 bits (330), Expect = 3.0e-27 Identity = 64/78 (82.05%), Postives = 68/78 (87.18%), Query Frame = 0
BLAST of Sed0018176 vs. ExPASy TrEMBL
Match: A0A6J1FBH6 (uncharacterized protein LOC111442555 OS=Cucurbita moschata OX=3662 GN=LOC111442555 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 2.2e-31 Identity = 70/85 (82.35%), Postives = 75/85 (88.24%), Query Frame = 0
BLAST of Sed0018176 vs. ExPASy TrEMBL
Match: A0A6J1C955 (uncharacterized protein LOC111009454 OS=Momordica charantia OX=3673 GN=LOC111009454 PE=4 SV=1) HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30 Identity = 70/86 (81.40%), Postives = 74/86 (86.05%), Query Frame = 0
BLAST of Sed0018176 vs. ExPASy TrEMBL
Match: A0A0A0LAW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171730 PE=4 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 1.8e-17 Identity = 51/68 (75.00%), Postives = 56/68 (82.35%), Query Frame = 0
BLAST of Sed0018176 vs. ExPASy TrEMBL
Match: A0A5A7U8R2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1769G00130 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 8.9e-17 Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 0
BLAST of Sed0018176 vs. ExPASy TrEMBL
Match: E5GC50 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 8.9e-17 Identity = 50/67 (74.63%), Postives = 55/67 (82.09%), Query Frame = 0
BLAST of Sed0018176 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 65.1 bits (157), Expect = 3.2e-11 Identity = 44/92 (47.83%), Postives = 55/92 (59.78%), Query Frame = 0
BLAST of Sed0018176 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 65.1 bits (157), Expect = 3.2e-11 Identity = 31/43 (72.09%), Postives = 37/43 (86.05%), Query Frame = 0
BLAST of Sed0018176 vs. TAIR 10
Match: AT1G48325.1 (Expressed protein ) HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05 Identity = 27/82 (32.93%), Postives = 48/82 (58.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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