Sed0018008 (gene) Chayote v1

Overview
NameSed0018008
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG14: 820775 .. 821092 (-)
RNA-Seq ExpressionSed0018008
SyntenySed0018008
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGCCAAAGCATGGTGTTGTGGTTTTCTTCTTCTTTCTCATAGCCATGTCTTCTCCTTCTGTGCTCATGACCAATGCAAGATTTTCTTTCGCTTTCACGAACGGGACGCCATTGAATGAACCATCGACTAGACCACCGGCTAACCCGATGACGGGTGCGGCTACGGGTTTTAACCATTTTTTCGCTGGAAAAGCAACTGAGAGAGCGAAAGGAAGTGCAGCCATGTGGGGTTGGGCTGCTCATGATTGTAAGCCTAAGGGACCGGTTAGATGGTCGGCTCCCAATCCAATCCGTAATAATTTTATTTTATGCTAA

mRNA sequence

ATGGCGCCAAAGCATGGTGTTGTGGTTTTCTTCTTCTTTCTCATAGCCATGTCTTCTCCTTCTGTGCTCATGACCAATGCAAGATTTTCTTTCGCTTTCACGAACGGGACGCCATTGAATGAACCATCGACTAGACCACCGGCTAACCCGATGACGGGTGCGGCTACGGGTTTTAACCATTTTTTCGCTGGAAAAGCAACTGAGAGAGCGAAAGGAAGTGCAGCCATGTGGGGTTGGGCTGCTCATGATTGTAAGCCTAAGGGACCGGTTAGATGGTCGGCTCCCAATCCAATCCGTAATAATTTTATTTTATGCTAA

Coding sequence (CDS)

ATGGCGCCAAAGCATGGTGTTGTGGTTTTCTTCTTCTTTCTCATAGCCATGTCTTCTCCTTCTGTGCTCATGACCAATGCAAGATTTTCTTTCGCTTTCACGAACGGGACGCCATTGAATGAACCATCGACTAGACCACCGGCTAACCCGATGACGGGTGCGGCTACGGGTTTTAACCATTTTTTCGCTGGAAAAGCAACTGAGAGAGCGAAAGGAAGTGCAGCCATGTGGGGTTGGGCTGCTCATGATTGTAAGCCTAAGGGACCGGTTAGATGGTCGGCTCCCAATCCAATCCGTAATAATTTTATTTTATGCTAA

Protein sequence

MAPKHGVVVFFFFLIAMSSPSVLMTNARFSFAFTNGTPLNEPSTRPPANPMTGAATGFNHFFAGKATERAKGSAAMWGWAAHDCKPKGPVRWSAPNPIRNNFILC
Homology
[Close]
BLAST of Sed0018008 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 40/108 (37.04%), Postives = 53/108 (49.07%), Query Frame = 0 

Query: 1   MAPKHG--VVVFFFFLIAMSSPSVLMTNARFSFAF-TNGTPLNEPSTRPPANPMTGAATG 60
           M P+ G  + + FF LI +SSPS ++  +R   A  T  +P   P  +PP +        
Sbjct: 1   MGPRGGAFLTIIFFLLIVISSPSTIIATSRHMLALDTKESPPQPPMDKPPTS-------- 60

Query: 61  FNHFFAGKATERAKGSAAMWGWAAHDCKPKGPVRWSAPNPIRNNFILC 106
            N F         K    M   A   CKPKGPVRWS+P+PIRNN  +C
Sbjct: 61  -NDFDTLSLPNGTKAMPPMPESAVRSCKPKGPVRWSSPSPIRNNLPIC 99

The following BLAST results are available for this feature:
BLAST of Sed0018008 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595583.11.9e-0737.04hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Sed0018008 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0018008 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0018008 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0018008.1Sed0018008.1mRNA