Sed0017936 (gene) Chayote v1

Overview


Name	Sed0017936
Type	gene
Organism	Sechium edule (Chayote v1)
Description	transcription factor bHLH140
Location	LG03: 34162522 .. 34163130 (-)
RNA-Seq Expression	Sed0017936
Synteny	Sed0017936

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGCCCATATTCTCATCCTTACTTCAATTCTCCAAGTGGGTGTGTTGGAAAGAAAAACTAATGGATTACACATTTCCAACGAGCAATCCCAGCTCGTGTGGCTCATCCTCCGGTGGCGGAACAACCACCGGAGAAACCCGAAGGGAGAAGACGAAGAAAAATATGGGCGGCGGGAAGCGGAGCAAAGGCATCGTGAAGCTGTCAACGGACCCTCAAAGCGTGGCGGCAAGAGAGCGTCGGCATCGGATCAGCGACAGGTTCAAGATTTTGCAGAGCTTAGTACCCGGCGGCACCAAAATGGACACTGTGTCAATGCTGGACGAAGCCATCCACTACGTGAAGTTCTTGAAATCCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTACGATGACCCTTCTAATTCTGCCGCCGTCCCTCCCGACCATATTGCCGGCGGCGAGTTCAGCAATATGAATCACTTTCTTTACCCTCAAAACGACGCCGTTAAAATGGAGGAGTCTCCTAATTTCTTGCCTCAGCTTGATCCCAACAGCGTTTATTTTCCTTCTGGGCAAGACCAATTCATGTGCTCTTCTTATGATGCTTACATGAACTTCTAG

mRNA sequence

GTGCCCATATTCTCATCCTTACTTCAATTCTCCAAGTGGGTGTGTTGGAAAGAAAAACTAATGGATTACACATTTCCAACGAGCAATCCCAGCTCGTGTGGCTCATCCTCCGGTGGCGGAACAACCACCGGAGAAACCCGAAGGGAGAAGACGAAGAAAAATATGGGCGGCGGGAAGCGGAGCAAAGGCATCGTGAAGCTGTCAACGGACCCTCAAAGCGTGGCGGCAAGAGAGCGTCGGCATCGGATCAGCGACAGGTTCAAGATTTTGCAGAGCTTAGTACCCGGCGGCACCAAAATGGACACTGTGTCAATGCTGGACGAAGCCATCCACTACGTGAAGTTCTTGAAATCCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTACGATGACCCTTCTAATTCTGCCGCCGTCCCTCCCGACCATATTGCCGGCGGCGAGTTCAGCAATATGAATCACTTTCTTTACCCTCAAAACGACGCCGTTAAAATGGAGGAGTCTCCTAATTTCTTGCCTCAGCTTGATCCCAACAGCGTTTATTTTCCTTCTGGGCAAGACCAATTCATGTGCTCTTCTTATGATGCTTACATGAACTTCTAG

Coding sequence (CDS)

ATGGATTACACATTTCCAACGAGCAATCCCAGCTCGTGTGGCTCATCCTCCGGTGGCGGAACAACCACCGGAGAAACCCGAAGGGAGAAGACGAAGAAAAATATGGGCGGCGGGAAGCGGAGCAAAGGCATCGTGAAGCTGTCAACGGACCCTCAAAGCGTGGCGGCAAGAGAGCGTCGGCATCGGATCAGCGACAGGTTCAAGATTTTGCAGAGCTTAGTACCCGGCGGCACCAAAATGGACACTGTGTCAATGCTGGACGAAGCCATCCACTACGTGAAGTTCTTGAAATCCCAGATTTGGCTTCATCAAACCATGATTAATTTCGTTGATTACGATGACCCTTCTAATTCTGCCGCCGTCCCTCCCGACCATATTGCCGGCGGCGAGTTCAGCAATATGAATCACTTTCTTTACCCTCAAAACGACGCCGTTAAAATGGAGGAGTCTCCTAATTTCTTGCCTCAGCTTGATCCCAACAGCGTTTATTTTCCTTCTGGGCAAGACCAATTCATGTGCTCTTCTTATGATGCTTACATGAACTTCTAG

Protein sequence

MDYTFPTSNPSSCGSSSGGGTTTGETRREKTKKNMGGGKRSKGIVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQTMINFVDYDDPSNSAAVPPDHIAGGEFSNMNHFLYPQNDAVKMEESPNFLPQLDPNSVYFPSGQDQFMCSSYDAYMNF

Homology

[Close]

BLAST of Sed0017936 vs. NCBI nr
Match: XP_022931869.1 (transcription factor bHLH140 [Cucurbita moschata])

HSP 1 Score: 291.2 bits (744), Expect = 6.2e-75
Identity = 154/195 (78.97%), Postives = 161/195 (82.56%), Query Frame = 0


Query: 1   MDYTFPTSNPSSCGSSSGGGTTTGETRREKTKKNMG---GGKRSKGIVKLSTDPQSVAAR 60
           MDYTFP SNPSSCGSSS GG TTG TR+EK KKN     GGKRSKG+VKLSTDPQSVAAR
Sbjct: 1   MDYTFPASNPSSCGSSS-GGATTGATRKEKLKKNSSGSCGGKRSKGVVKLSTDPQSVAAR 60

Query: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQTMINFVDYDDPSN 120
           ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLK+QIWLHQTMINFVDYDD SN
Sbjct: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSN 120

Query: 121 SAAVPP--------DHIAGGEFSN--MNHFLYPQNDAVKMEESPNFLPQLDPNSVYFPSG 180
           S A           D IAGGEF N   N F+Y QND VKMEE PN LPQLDPN++YFPSG
Sbjct: 121 STAAAAAVNCGFHFDQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDPNNLYFPSG 180

Query: 181 QDQFMCSSYDAYMNF 183
           QDQ+MCSSYD YMNF
Sbjct: 181 QDQYMCSSYDPYMNF 194

[Close]

BLAST of Sed0017936 vs. NCBI nr
Match: XP_023518081.1 (transcription factor bHLH140-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 291.2 bits (744), Expect = 6.2e-75
Identity = 155/196 (79.08%), Postives = 160/196 (81.63%), Query Frame = 0


Query: 1   MDYTFPTSNPSSCGSSSGGGTTTGETRREKTKKNMG---GGKRSKGIVKLSTDPQSVAAR 60
           MDYTFP SNPSSCGSSS GG TTG TRREK KKN     GGKRSKG+VKLSTDPQSVAAR
Sbjct: 1   MDYTFPASNPSSCGSSS-GGATTGATRREKLKKNNSGSCGGKRSKGVVKLSTDPQSVAAR 60

Query: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQTMINFVDYDDPSN 120
           ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLK+QIWLHQTMINFVDYDD SN
Sbjct: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSN 120

Query: 121 SAAVPP---------DHIAGGEFSN--MNHFLYPQNDAVKMEESPNFLPQLDPNSVYFPS 180
           S              D IAGGEF N   N F+Y QND VKMEE PN LPQLDPN +YFPS
Sbjct: 121 STVATAAAVNCGFHLDQIAGGEFHNNHTNSFVYSQNDVVKMEEPPNLLPQLDPNPLYFPS 180

Query: 181 GQDQFMCSSYDAYMNF 183
           GQDQ+MCSSYDAYMNF
Sbjct: 181 GQDQYMCSSYDAYMNF 195

[Close]

BLAST of Sed0017936 vs. NCBI nr
Match: KAG6595412.1 (Transcription factor basic helix-loop-helix 140, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 289.3 bits (739), Expect = 2.4e-74
Identity = 153/195 (78.46%), Postives = 160/195 (82.05%), Query Frame = 0


Query: 1   MDYTFPTSNPSSCGSSSGGGTTTGETRREKTKKNMG---GGKRSKGIVKLSTDPQSVAAR 60
           MDYTFP SNPSSCGSSS GG TTG TR+EK KKN     GGKRSKG+VKLSTDPQSVAAR
Sbjct: 1   MDYTFPASNPSSCGSSS-GGATTGATRKEKLKKNSSGSCGGKRSKGVVKLSTDPQSVAAR 60

Query: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQTMINFVDYDDPSN 120
           ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLK+QIWLHQTMINFVDYDD SN
Sbjct: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSN 120

Query: 121 SAAVPP--------DHIAGGEFSN--MNHFLYPQNDAVKMEESPNFLPQLDPNSVYFPSG 180
           S A           D IAGGEF N   N F+Y QND VKMEE PN LP LDPN++YFPSG
Sbjct: 121 STAAAAAVNCGFHFDQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPHLDPNNLYFPSG 180

Query: 181 QDQFMCSSYDAYMNF 183
           QDQ+MCSSYD YMNF
Sbjct: 181 QDQYMCSSYDPYMNF 194

[Close]

BLAST of Sed0017936 vs. NCBI nr
Match: XP_022966526.1 (transcription factor LAX PANICLE 1-like [Cucurbita maxima])

HSP 1 Score: 285.4 bits (729), Expect = 3.4e-73
Identity = 152/197 (77.16%), Postives = 160/197 (81.22%), Query Frame = 0


Query: 1   MDYTFPTSNPSSCGSSSGGGTTTGETRREKTKKNMG---GGKRSKGIVKLSTDPQSVAAR 60
           MDY FP SNPSSCGSSSGG TT   TR+EK KKN     GGKRSKG+VKLSTDPQSVAAR
Sbjct: 1   MDYNFPASNPSSCGSSSGGATTEA-TRKEKLKKNSSGSCGGKRSKGVVKLSTDPQSVAAR 60

Query: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQTMINFVDYDDPSN 120
           ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLK+QIWLHQTMINFVDYDD SN
Sbjct: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSN 120

Query: 121 SAAVPP----------DHIAGGEFSN--MNHFLYPQNDAVKMEESPNFLPQLDPNSVYFP 180
           S A             + IAGGEF N   N F+Y QND VKMEE PN LPQLDPN++YFP
Sbjct: 121 STAAVTAAAVNCGFHFNQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDPNNLYFP 180

Query: 181 SGQDQFMCSSYDAYMNF 183
           SGQDQ+MCSSYDAYMNF
Sbjct: 181 SGQDQYMCSSYDAYMNF 196

[Close]

BLAST of Sed0017936 vs. NCBI nr
Match: XP_022978297.1 (transcription factor LAX PANICLE 1 [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 2.1e-67
Identity = 145/191 (75.92%), Postives = 159/191 (83.25%), Query Frame = 0


Query: 1   MDYTFPTSNPSSCGSSSGGGTTTGETRREKTKKN---MGGGKRSKGIVKLSTDPQSVAAR 60
           MDY+FP SNPSSCGSSSGG    GETRREK KKN    GGGKRSKG++KLSTDPQSVAAR
Sbjct: 1   MDYSFPASNPSSCGSSSGG--DGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAAR 60

Query: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQTMINFVDYDDPSN 120
           ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLK+QIWLHQTMINFVDYDDPS+
Sbjct: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSS 120

Query: 121 SAAV------PPDHIAGGEFSNMNHFLYPQNDAVKMEESPNFLPQLDPNSVYFPSGQDQF 180
           S+A       P   I  G   +MN F++ +N+ VKMEE   FLP LDP+++YFPSGQDQF
Sbjct: 121 SSAATAAVNCPNSGIPVG--GDMN-FVFSENEVVKMEEP--FLPHLDPDNIYFPSGQDQF 180

Query: 181 MCSSYDAYMNF 183
           MCSSYDAYMNF
Sbjct: 181 MCSSYDAYMNF 184

[Close]

BLAST of Sed0017936 vs. ExPASy Swiss-Prot
Match: Q9M041 (Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.9e-28
Identity = 77/164 (46.95%), Postives = 99/164 (60.37%), Query Frame = 0


Query: 2   DYTFPTSNPSSCGSSSGGGTTTGETRREKTKKNMGGGKRSKGIVKLSTDPQSVAARERRH 61
           D+   + NP+S  ++S   ++       + K   G  KRS+    LSTDPQSVAAR+RRH
Sbjct: 3   DFNLRSENPNSSSTTSSSSSSF-----HRHKSETGNTKRSRSTSTLSTDPQSVAARDRRH 62

Query: 62  RISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQTMINFVDYDDPSNSAAV 121
           RISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK+QIW HQ M+ F++  + ++S   
Sbjct: 63  RISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETTSSCTY 122

Query: 122 PPDHIAGGEFSNMNHFLYPQNDAVKMEESPNFLPQLDPNSVYFP 166
            P     GEF     F Y  + A  M+     +P    +S Y P
Sbjct: 123 SP---GAGEF-GPKLFGYDDDYAPIMDTYSQGVPLTVADSKYTP 157

[Close]

BLAST of Sed0017936 vs. ExPASy Swiss-Prot
Match: Q7XAQ6 (Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=LAX1 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 6.8e-24
Identity = 55/72 (76.39%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 36  GGGKRSKGIVKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKF 95
           GGG+R  G  KLSTDPQSVAARERRHRISDRF++L+SLVPGG+KMDTVSML++AIHYVKF
Sbjct: 30  GGGRRRPG-AKLSTDPQSVAARERRHRISDRFRVLRSLVPGGSKMDTVSMLEQAIHYVKF 89

Query: 96  LKSQIWLHQTMI 108
           LK+Q+ LHQ  +
Sbjct: 90  LKAQVTLHQAAL 100

[Close]

BLAST of Sed0017936 vs. ExPASy Swiss-Prot
Match: Q9FHA7 (Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.2e-18
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 45  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQI 101
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 126 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]

BLAST of Sed0017936 vs. ExPASy Swiss-Prot
Match: Q9SND4 (Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.2e-18
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 45  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQI 101
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 178

[Close]

BLAST of Sed0017936 vs. ExPASy Swiss-Prot
Match: Q8S3D2 (Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.6e-17
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 0


Query: 45  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQ 104
           VK+STDPQ+VAAR+RR RIS++ ++LQ+LVPGGTKMDT SMLDEA +Y+KFL++Q+   +
Sbjct: 273 VKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

Query: 105 TMINFVDYDDPSNSAA---VPPDHIAGGEFSNMNHFLYPQNDAVKMEESPNFLPQLDPNS 164
            +   +D  + S S+A    P  H                         P+FLP  +PN 
Sbjct: 333 NLRPKLDQTNLSFSSAPTSFPLFH-------------------------PSFLPLQNPNQ 371

Query: 165 VYFP 166
           ++ P
Sbjct: 393 IHHP 371

[Close]

BLAST of Sed0017936 vs. ExPASy TrEMBL
Match: A0A6J1EVF6 (transcription factor bHLH140 OS=Cucurbita moschata OX=3662 GN=LOC111438152 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.0e-75
Identity = 154/195 (78.97%), Postives = 161/195 (82.56%), Query Frame = 0


Query: 1   MDYTFPTSNPSSCGSSSGGGTTTGETRREKTKKNMG---GGKRSKGIVKLSTDPQSVAAR 60
           MDYTFP SNPSSCGSSS GG TTG TR+EK KKN     GGKRSKG+VKLSTDPQSVAAR
Sbjct: 1   MDYTFPASNPSSCGSSS-GGATTGATRKEKLKKNSSGSCGGKRSKGVVKLSTDPQSVAAR 60

Query: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQTMINFVDYDDPSN 120
           ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLK+QIWLHQTMINFVDYDD SN
Sbjct: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSN 120

Query: 121 SAAVPP--------DHIAGGEFSN--MNHFLYPQNDAVKMEESPNFLPQLDPNSVYFPSG 180
           S A           D IAGGEF N   N F+Y QND VKMEE PN LPQLDPN++YFPSG
Sbjct: 121 STAAAAAVNCGFHFDQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDPNNLYFPSG 180

Query: 181 QDQFMCSSYDAYMNF 183
           QDQ+MCSSYD YMNF
Sbjct: 181 QDQYMCSSYDPYMNF 194

[Close]

BLAST of Sed0017936 vs. ExPASy TrEMBL
Match: A0A6J1HPK4 (transcription factor LAX PANICLE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466180 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.6e-73
Identity = 152/197 (77.16%), Postives = 160/197 (81.22%), Query Frame = 0


Query: 1   MDYTFPTSNPSSCGSSSGGGTTTGETRREKTKKNMG---GGKRSKGIVKLSTDPQSVAAR 60
           MDY FP SNPSSCGSSSGG TT   TR+EK KKN     GGKRSKG+VKLSTDPQSVAAR
Sbjct: 1   MDYNFPASNPSSCGSSSGGATTEA-TRKEKLKKNSSGSCGGKRSKGVVKLSTDPQSVAAR 60

Query: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQTMINFVDYDDPSN 120
           ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLK+QIWLHQTMINFVDYDD SN
Sbjct: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDSSN 120

Query: 121 SAAVPP----------DHIAGGEFSN--MNHFLYPQNDAVKMEESPNFLPQLDPNSVYFP 180
           S A             + IAGGEF N   N F+Y QND VKMEE PN LPQLDPN++YFP
Sbjct: 121 STAAVTAAAVNCGFHFNQIAGGEFHNNDTNSFVYSQNDVVKMEEPPNLLPQLDPNNLYFP 180

Query: 181 SGQDQFMCSSYDAYMNF 183
           SGQDQ+MCSSYDAYMNF
Sbjct: 181 SGQDQYMCSSYDAYMNF 196

[Close]

BLAST of Sed0017936 vs. ExPASy TrEMBL
Match: A0A6J1IKQ9 (transcription factor LAX PANICLE 1 OS=Cucurbita maxima OX=3661 GN=LOC111478325 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.0e-67
Identity = 145/191 (75.92%), Postives = 159/191 (83.25%), Query Frame = 0


Query: 1   MDYTFPTSNPSSCGSSSGGGTTTGETRREKTKKN---MGGGKRSKGIVKLSTDPQSVAAR 60
           MDY+FP SNPSSCGSSSGG    GETRREK KKN    GGGKRSKG++KLSTDPQSVAAR
Sbjct: 1   MDYSFPASNPSSCGSSSGG--DGGETRREKMKKNGGGSGGGKRSKGVMKLSTDPQSVAAR 60

Query: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQTMINFVDYDDPSN 120
           ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLK+QIWLHQTMINFVDYDDPS+
Sbjct: 61  ERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDDPSS 120

Query: 121 SAAV------PPDHIAGGEFSNMNHFLYPQNDAVKMEESPNFLPQLDPNSVYFPSGQDQF 180
           S+A       P   I  G   +MN F++ +N+ VKMEE   FLP LDP+++YFPSGQDQF
Sbjct: 121 SSAATAAVNCPNSGIPVG--GDMN-FVFSENEVVKMEEP--FLPHLDPDNIYFPSGQDQF 180

Query: 181 MCSSYDAYMNF 183
           MCSSYDAYMNF
Sbjct: 181 MCSSYDAYMNF 184

[Close]

BLAST of Sed0017936 vs. ExPASy TrEMBL
Match: A0A0A0KXM0 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G312280 PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 1.8e-67
Identity = 144/196 (73.47%), Postives = 158/196 (80.61%), Query Frame = 0


Query: 1   MDYTFPTSNPSSCGSSSGGGTTTGETRREKTKKNMGG-GKRSKGIVKLSTDPQSVAARER 60
           MDY FP SNPSSCGSSSGGG   G+ + +K   N GG GKRSKG+VKLSTDPQSVAARER
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGGGGKEKMKKNNNNHGGAGKRSKGVVKLSTDPQSVAARER 60

Query: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQTMINFVDYDDPSNSA 120
           RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLK+QIWLHQTMINFVDYD  S++A
Sbjct: 61  RHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAA 120

Query: 121 ---------AVPPDHIAGGEFSNMNHFLYPQNDAVKMEESPNFLPQLDP---NSVYFPSG 180
                      P + IA GE++NMN+ LYPQND VKMEE PNFLPQLDP   N+VYFPS 
Sbjct: 121 VSAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEE-PNFLPQLDPNNNNNVYFPSD 180

Query: 181 -QDQFMCSSYDAYMNF 183
            QDQF+ SSYD Y+NF
Sbjct: 181 HQDQFISSSYDPYINF 195

[Close]

BLAST of Sed0017936 vs. ExPASy TrEMBL
Match: A0A5A7T6E1 (HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold141G00320 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 2.5e-66
Identity = 140/195 (71.79%), Postives = 155/195 (79.49%), Query Frame = 0


Query: 1   MDYTFPTSNPSSCGSSSGGGTTTGETRREKTKKNMGGGKRSKGIVKLSTDPQSVAARERR 60
           MDY FP SNPSSCGSSSGGG    + ++     + G GKRSKG+VKLSTDPQSVAARERR
Sbjct: 1   MDYNFPASNPSSCGSSSGGGGGKEKMKKNNNNNHGGAGKRSKGVVKLSTDPQSVAARERR 60

Query: 61  HRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQTMINFVDYDDPSNSA- 120
           HRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLK+QIWLHQTMINFVDYD  S++A 
Sbjct: 61  HRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKTQIWLHQTMINFVDYDSNSSAAV 120

Query: 121 --------AVPPDHIAGGEFSNMNHFLYPQNDAVKMEESPNFLPQLDP---NSVYFPSG- 180
                     P + IA GE++NMN+ LYPQND VKMEE PNFLPQLDP   N+VYFPS  
Sbjct: 121 SAAATANSGFPFEQIASGEYNNMNNLLYPQNDVVKMEE-PNFLPQLDPNNNNNVYFPSDH 180

Query: 181 QDQFMCSSYDAYMNF 183
           QDQF+ SSYD Y+NF
Sbjct: 181 QDQFISSSYDPYINF 194

[Close]

BLAST of Sed0017936 vs. TAIR 10
Match: AT5G01310.1 (APRATAXIN-like )

HSP 1 Score: 125.6 bits (314), Expect = 4.2e-29
Identity = 77/164 (46.95%), Postives = 99/164 (60.37%), Query Frame = 0


Query: 2   DYTFPTSNPSSCGSSSGGGTTTGETRREKTKKNMGGGKRSKGIVKLSTDPQSVAARERRH 61
           D+   + NP+S  ++S   ++       + K   G  KRS+    LSTDPQSVAAR+RRH
Sbjct: 3   DFNLRSENPNSSSTTSSSSSSF-----HRHKSETGNTKRSRSTSTLSTDPQSVAARDRRH 62

Query: 62  RISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQTMINFVDYDDPSNSAAV 121
           RISDRFKILQS+VPGG KMDTVSMLDEAI YVKFLK+QIW HQ M+ F++  + ++S   
Sbjct: 63  RISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLKAQIWYHQNMLLFINDHETTSSCTY 122

Query: 122 PPDHIAGGEFSNMNHFLYPQNDAVKMEESPNFLPQLDPNSVYFP 166
            P     GEF     F Y  + A  M+     +P    +S Y P
Sbjct: 123 SP---GAGEF-GPKLFGYDDDYAPIMDTYSQGVPLTVADSKYTP 157

[Close]

BLAST of Sed0017936 vs. TAIR 10
Match: AT3G50330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 5.1e-19
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 45  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQI 101
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 123 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 178

[Close]

BLAST of Sed0017936 vs. TAIR 10
Match: AT5G67060.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 5.1e-19
Identity = 44/56 (78.57%), Postives = 49/56 (87.50%), Query Frame = 0


Query: 45  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQI 101
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAIHYVKFLK Q+
Sbjct: 126 VRISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQV 181

[Close]

BLAST of Sed0017936 vs. TAIR 10
Match: AT3G21330.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 89.7 bits (221), Expect = 2.6e-18
Identity = 52/124 (41.94%), Postives = 74/124 (59.68%), Query Frame = 0


Query: 45  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWLHQ 104
           VK+STDPQ+VAAR+RR RIS++ ++LQ+LVPGGTKMDT SMLDEA +Y+KFL++Q+   +
Sbjct: 273 VKISTDPQTVAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKALE 332

Query: 105 TMINFVDYDDPSNSAA---VPPDHIAGGEFSNMNHFLYPQNDAVKMEESPNFLPQLDPNS 164
            +   +D  + S S+A    P  H                         P+FLP  +PN 
Sbjct: 333 NLRPKLDQTNLSFSSAPTSFPLFH-------------------------PSFLPLQNPNQ 371

Query: 165 VYFP 166
           ++ P
Sbjct: 393 IHHP 371

[Close]

BLAST of Sed0017936 vs. TAIR 10
Match: AT5G09750.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 3.3e-18
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 45  VKLSTDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLDEAIHYVKFLKSQIWL 103
           V++S DPQSVAAR RR RIS+R +ILQ LVPGGTKMDT SMLDEAI YVKFLK QI L
Sbjct: 123 VRISDDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRL 180

The following BLAST results are available for this feature:

BLAST of Sed0017936 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931869.1	6.2e-75	78.97	transcription factor bHLH140 [Cucurbita moschata]	[more]
XP_023518081.1	6.2e-75	79.08	transcription factor bHLH140-like [Cucurbita pepo subsp. pepo]	[more]
KAG6595412.1	2.4e-74	78.46	Transcription factor basic helix-loop-helix 140, partial [Cucurbita argyrosperma...	[more]
XP_022966526.1	3.4e-73	77.16	transcription factor LAX PANICLE 1-like [Cucurbita maxima]	[more]
XP_022978297.1	2.1e-67	75.92	transcription factor LAX PANICLE 1 [Cucurbita maxima]	[more]

BLAST of Sed0017936 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M041	5.9e-28	46.95	Transcription factor bHLH140 OS=Arabidopsis thaliana OX=3702 GN=BHLH140 PE=3 SV=...	[more]
Q7XAQ6	6.8e-24	76.39	Transcription factor LAX PANICLE 1 OS=Oryza sativa subsp. japonica OX=39947 GN=L...	[more]
Q9FHA7	7.2e-18	78.57	Transcription factor HEC1 OS=Arabidopsis thaliana OX=3702 GN=HEC1 PE=1 SV=1	[more]
Q9SND4	7.2e-18	78.57	Transcription factor HEC2 OS=Arabidopsis thaliana OX=3702 GN=HEC2 PE=1 SV=1	[more]
Q8S3D2	3.6e-17	41.94	Transcription factor bHLH87 OS=Arabidopsis thaliana OX=3702 GN=BHLH87 PE=1 SV=1	[more]

BLAST of Sed0017936 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVF6	3.0e-75	78.97	transcription factor bHLH140 OS=Cucurbita moschata OX=3662 GN=LOC111438152 PE=4 ...	[more]
A0A6J1HPK4	1.6e-73	77.16	transcription factor LAX PANICLE 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]
A0A6J1IKQ9	1.0e-67	75.92	transcription factor LAX PANICLE 1 OS=Cucurbita maxima OX=3661 GN=LOC111478325 P...	[more]
A0A0A0KXM0	1.8e-67	73.47	BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G312280 PE=4 S...	[more]
A0A5A7T6E1	2.5e-66	71.79	HLH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]

BLAST of Sed0017936 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01310.1	4.2e-29	46.95	APRATAXIN-like	[more]
AT3G50330.1	5.1e-19	78.57	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G67060.1	5.1e-19	78.57	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G21330.1	2.6e-18	41.94	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT5G09750.1	3.3e-18	77.59	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 53..102 e-value: 1.3E-12 score: 57.9
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 57..96 e-value: 1.3E-7 score: 31.5
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 47..96 score: 15.357671
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 50..108 e-value: 2.0E-10 score: 42.6
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 52..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR45914:SF2	TRANSCRIPTION FACTOR LAX PANICLE 1	coord: 30..125
None	No IPR available	PANTHER	PTHR45914	TRANSCRIPTION FACTOR HEC3-RELATED	coord: 30..125
None	No IPR available	CDD	cd11454	bHLH_AtIND_like	coord: 48..107 e-value: 8.15593E-41 score: 130.204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017936.1	Sed0017936.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity