Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTCTGATAGTAGCTTTAAACGTAGTTGGTAAGGACATAAGGGGGATCGTGGACGTAGATGGGGTGCTGGTGGGAGAAGTGATGGTGAAAGATGGAGGGAGGAGGTAGTTGAAAAGGGGATTGTCCTGTTGTCAACAGTGTTGTCTTAAAAGATTCCATGGTACCTTCTGAAAAGATTGCAAATTGGCATACAAAGGAAGACAATCTGTTTGGAGATATGCGAATGGAGATAAGAAAAGTTGTCTAAAAAAGGAATGTTTCTGAAGTTATTAAGGAGGGAGGAATAAATGAAGCAAAGGCGCATCTCAAAGAAGGGCAGAAGAATGTGTTGAGATTAAATTATGATGTGACCAAATTAAAGGATTCAAAGGAGTTTGAATCAATTGATGTAGAGCTAAAAGATAATGAAGTGGTAAGTGATACTGATGATTGCAAAGAAGTAAAGGCCAGAAAATTCAGGAGATTCAAACAATCTAATGAAAGGGATGGGAGTAGCCACACAGATATGGATATTATCAAAGGCAAAAGAAAATTGGAAATAGAGGAAGAGACTGGTGTGGCAGGTAAGCGGGTCCGAAATAATGAGATGAATCATATGAGCTTGGTGGTGGCTGGTGATCAGCCCCACCTCCCATTATAAAAACCTTATGTTGGAACGTCTGTGGAGCAAATAATTCACGGGTGTTCGCGGACTTACTGGAGGTAGTTCACTTCGAGAAGCCCAATTTATTGTTCCTTTCTAAAACTAAGTCTAAAGGATAGAATTGAATTTTTGAGATCTCGTTTGAATTTTGATAATTGTTTTTATTAGATTGCATAGACTTAAGTGGAGGCCTTAGTTTATTCTGGTCGAATGACATGGATTTGCAGATTCTTTCTTCATCCAAGAATCATATTGATTGTGACATTTCTATGAACGATATTAAATGGCATTTTTCGGGCATGTATGGCTTCCTGATAAATCATTTAAAGGAGTTGACATGGAATTTATTGAGGGGATTGTCTCTAAATGTGGAGGTTTCTTGGCTTGTTGGAGGTGACTTCAATGAAATGTTATGGAGTTATGAGAAGAAGGGTGGATCCCATGAGACATCTCATTGTATGGAGGATTTTAGAGAAGTTACGGAAGATATTGGCCTTCAAGATTTGGGTTTTAATGGTGACATCTACACTTTGGTGTAACAGATGGACAAATGGTGTGCCTATTTTTAAGCGGTTGGACAGATTTTTAGCAAATAAAGATTTTTGTAATTTTTCCCCTAGTTTGAAAGTTGTTAATTTGGATTGGTATGCTTCGGATCACAAGTCGATTTTCTTTATTTTTGATGGAGCTGAAAGTTCCTCACTATGTCAAACCGATGTTCAGATTTGAAGAATTTTGGACCGATGAGCCTTCTTGTTTTGACTTAGTGAAAGCTGGGTGGAAAGCTTCCAATGGAAGTCATGATGATTTTGCTGAATCTTTGCGTGGATGCAAGAATCAATTGTGGAATTGGGGTAGAAGATTAAAAAATGAAAAGTGGCGTGCTATTCAAAGAATTAGACTTCTCATTCGTGAGGAATTTTCTAGAAAGAAAAATCCTAATTTTGGACAGATTCGTGAGCTCGAGGGAGATTTAGATGCTCTTATTCTTGCCGAAGAAAAATATTGGAAGCAAAGATCTAGAATTGGTTGGCTTCGTTGGGGCTTCACTGGGAAGGATTTGATTATGTCGCCTGTTGATCTCCAATTGACCGGAACACTAGTTGGTTTCATAGAAAAGCCTCCTCAAGAAGGGAAAGAAATTTTGTGA
mRNA sequence
ATGGTTCTGATAGTAGCTTTAAACGTAGTTGGTAAGGACATAAGGGGGATCGTGGACGTAGATGGGGTGCTGGTGGGAGAAGTGATGGTGAAAGATGGAGGGAGGAGGAATGTTTCTGAAGTTATTAAGGAGGGAGGAATAAATGAAGCAAAGGCGCATCTCAAAGAAGGGCAGAAGAATGTGTTGAGATTAAATTATGATGTGACCAAATTAAAGGATTCAAAGGAGTTTGAATCAATTGATGTAGAGCTAAAAGATAATGAAGTGGTAAGTGATACTGATGATTGCAAAGAAGTAAAGGCCAGAAAATTCAGGAGATTCAAACAATCTAATGAAAGGGATGGGAGTAGCCACACAGATATGGATATTATCAAAGGCAAAAGAAAATTGGAAATAGAGGAAGAGACTGGTGTGGCAGATTGCATAGACTTAAGTGGAGGCCTTAGTTTATTCTGGTCGAATGACATGGATTTGCAGATTCTTTCTTCATCCAAGAATCATATTGATTGTGACATTTCTATGAACGATATTAAATGGCATTTTTCGGGCATGTATGGCTTCCTGATAAATCATTTAAAGGAGTTGACATGGAATTTATTGAGGGGATTGTCTCTAAATGTGGAGGTTTCTTGGCTTGTTGGAGGTGACTTCAATGAAATGTTATGGAGTTATGAGAAGAAGGGTGGATCCCATGAGACATCTCATTGTATGGAGGATTTTAGAGAAGTTACGGAAGATATTGGCCTTCAAGATTTGGGTTTTAATGTGAAAGCTGGGTGGAAAGCTTCCAATGGAAGTCATGATGATTTTGCTGAATCTTTGCGTGGATGCAAGAATCAATTGTGGAATTGGGGTAGAAGATTAAAAAATGAAAAGTGGCGTGCTATTCAAAGAATTAGACTTCTCATTCGTGAGGAATTTTCTAGAAAGAAAAATCCTAATTTTGGACAGATTCGTGAGCTCGAGGGAGATTTAGATGCTCTTATTCTTGCCGAAGAAAAATATTGGAAGCAAAGATCTAGAATTGGTTGGCTTCGTTGGGGCTTCACTGGGAAGGATTTGATTATGTCGCCTGTTGATCTCCAATTGACCGGAACACTAGTTGGTTTCATAGAAAAGCCTCCTCAAGAAGGGAAAGAAATTTTGTGA
Coding sequence (CDS)
ATGGTTCTGATAGTAGCTTTAAACGTAGTTGGTAAGGACATAAGGGGGATCGTGGACGTAGATGGGGTGCTGGTGGGAGAAGTGATGGTGAAAGATGGAGGGAGGAGGAATGTTTCTGAAGTTATTAAGGAGGGAGGAATAAATGAAGCAAAGGCGCATCTCAAAGAAGGGCAGAAGAATGTGTTGAGATTAAATTATGATGTGACCAAATTAAAGGATTCAAAGGAGTTTGAATCAATTGATGTAGAGCTAAAAGATAATGAAGTGGTAAGTGATACTGATGATTGCAAAGAAGTAAAGGCCAGAAAATTCAGGAGATTCAAACAATCTAATGAAAGGGATGGGAGTAGCCACACAGATATGGATATTATCAAAGGCAAAAGAAAATTGGAAATAGAGGAAGAGACTGGTGTGGCAGATTGCATAGACTTAAGTGGAGGCCTTAGTTTATTCTGGTCGAATGACATGGATTTGCAGATTCTTTCTTCATCCAAGAATCATATTGATTGTGACATTTCTATGAACGATATTAAATGGCATTTTTCGGGCATGTATGGCTTCCTGATAAATCATTTAAAGGAGTTGACATGGAATTTATTGAGGGGATTGTCTCTAAATGTGGAGGTTTCTTGGCTTGTTGGAGGTGACTTCAATGAAATGTTATGGAGTTATGAGAAGAAGGGTGGATCCCATGAGACATCTCATTGTATGGAGGATTTTAGAGAAGTTACGGAAGATATTGGCCTTCAAGATTTGGGTTTTAATGTGAAAGCTGGGTGGAAAGCTTCCAATGGAAGTCATGATGATTTTGCTGAATCTTTGCGTGGATGCAAGAATCAATTGTGGAATTGGGGTAGAAGATTAAAAAATGAAAAGTGGCGTGCTATTCAAAGAATTAGACTTCTCATTCGTGAGGAATTTTCTAGAAAGAAAAATCCTAATTTTGGACAGATTCGTGAGCTCGAGGGAGATTTAGATGCTCTTATTCTTGCCGAAGAAAAATATTGGAAGCAAAGATCTAGAATTGGTTGGCTTCGTTGGGGCTTCACTGGGAAGGATTTGATTATGTCGCCTGTTGATCTCCAATTGACCGGAACACTAGTTGGTTTCATAGAAAAGCCTCCTCAAGAAGGGAAAGAAATTTTGTGA
Protein sequence
MVLIVALNVVGKDIRGIVDVDGVLVGEVMVKDGGRRNVSEVIKEGGINEAKAHLKEGQKNVLRLNYDVTKLKDSKEFESIDVELKDNEVVSDTDDCKEVKARKFRRFKQSNERDGSSHTDMDIIKGKRKLEIEEETGVADCIDLSGGLSLFWSNDMDLQILSSSKNHIDCDISMNDIKWHFSGMYGFLINHLKELTWNLLRGLSLNVEVSWLVGGDFNEMLWSYEKKGGSHETSHCMEDFREVTEDIGLQDLGFNVKAGWKASNGSHDDFAESLRGCKNQLWNWGRRLKNEKWRAIQRIRLLIREEFSRKKNPNFGQIRELEGDLDALILAEEKYWKQRSRIGWLRWGFTGKDLIMSPVDLQLTGTLVGFIEKPPQEGKEIL
Homology
BLAST of Sed0017813 vs. NCBI nr
Match:
XP_020412490.1 (uncharacterized protein LOC18793550 [Prunus persica])
HSP 1 Score: 126.7 bits (317), Expect = 4.2e-25
Identity = 78/237 (32.91%), Postives = 116/237 (48.95%), Query Frame = 0
Query: 132 IEEETG-----VADCIDLSGGLSLFWSNDMDLQILSSSKNHIDCDIS--MNDIKWHFSGM 191
I+E+ G V D I LSGGL LFW ++++L I SSS +HID ++ + + W +G
Sbjct: 47 IKEQLGFDYCFVVDAIGLSGGLCLFWKSELNLAIRSSSTHHIDAEVGGIGDSLHWRLTGF 106
Query: 192 YGFLINHLKELTWNLLRGLSLNVEVSWLVGGDFNEMLWSYEKKGGSHETSHCMEDFREVT 251
YG+ L+WNLLR L+ + W+ GDFNE+L++ EK+GG M FR+
Sbjct: 107 YGYPATEDTHLSWNLLRDLASESRLPWVCMGDFNELLYANEKEGGLIRPVRQMLAFRDAI 166
Query: 252 EDIGLQDLGFN--VKAGWKASNGSHDDFAESLRGCKN----------QLWNWGRRLKNEK 311
D L D+GF + NG + + C QL W R +
Sbjct: 167 SDCHLDDMGFEGATFTWFSTRNGGIKERLDRAHSCTKCVRRLKPPGIQLMQWQRSMFGTT 226
Query: 312 WRAIQRIRLLIREEFSRKKNPN-FGQIRELEGDLDALILAEEKYWKQRSRIGWLRWG 349
IQR+R + + + + N L LD+L+ EE +WKQRS++ WL+ G
Sbjct: 227 KAEIQRVRSQLDVVWRQPNSENTTATYHLLMSQLDSLLSREEAFWKQRSKVSWLKEG 283
BLAST of Sed0017813 vs. NCBI nr
Match:
XP_042944517.1 (uncharacterized protein LOC122278389 [Carya illinoinensis])
HSP 1 Score: 126.3 bits (316), Expect = 5.5e-25
Identity = 78/241 (32.37%), Postives = 125/241 (51.87%), Query Frame = 0
Query: 122 DIIKGKRKLEIEEETGVADCIDLSGGLSLFWSNDMDLQILSSSKNHIDCDISMND--IKW 181
D ++G R +E+ V D + SGGL++ W +M + + S S++HI +S N+ K
Sbjct: 42 DRVEGVRNKVGFDESFVVDSVGRSGGLAMIWKAEMQVDLYSYSQSHISLLVSQNEGGQKV 101
Query: 182 HFSGMYGFLINHLKELTWNLLRGLSLNVEVSWLVGGDFNEMLWSYEKKGGSHETSHCMED 241
+G YG + ++L+WNLLR L +++WL GDFNE+L + E+ GG + T M+
Sbjct: 102 MVTGFYGNPVVEKRKLSWNLLRRLKPKGQMAWLCCGDFNELLTNEEQHGGGNRTFSQMKY 161
Query: 242 FREVTEDIGLQDLGF-NVKAGWKASNGSHDDFAESL-RGCKNQLW----------NWGRR 301
FRE ++ L DLG+ K W + E L R N W +W +
Sbjct: 162 FREALDECELSDLGYEGSKFTWSNKREGNAFIKERLDRAFGNHKWHLSFHQTRVQDWAKS 221
Query: 302 LKNEKWRAIQRIRLLIREEFSRKKNPNFGQIRELEGDLDALILAEEKYWKQRSRIGWLRW 349
L K R +Q+ R +++E K +I+ L+G++D L+ EE W+QRS+ WL+
Sbjct: 222 LGGRKKRNLQQKRSILQEVLDANKGELNDEIKRLQGEIDDLLKEEEVRWRQRSKQLWLKE 281
BLAST of Sed0017813 vs. NCBI nr
Match:
KAA3472611.1 (reverse transcriptase [Gossypium australe])
HSP 1 Score: 119.8 bits (299), Expect = 5.2e-23
Identity = 80/257 (31.13%), Postives = 120/257 (46.69%), Query Frame = 0
Query: 124 IKGKRKLEIEEETGVADCIDL-----SGGLSLFWSNDMDLQILSSSKNHIDCDISMNDIK 183
I KR I + +G + ID+ GGL L W ++++ + + SK+HID I N+I+
Sbjct: 39 INDKRMERIRKRSGFVNGIDVGAEGSKGGLCLAWREEVNVSLRTFSKSHIDVLIEDNNIR 98
Query: 184 --WHFSGMYGFLINHLKELTWNLLRGLSLNVEVSWLVGGDFNEMLWSYEKKGGSHETSHC 243
W F+G YG + +W LLR L WLV GDFNE+L+S+EK GG
Sbjct: 99 AEWRFTGFYGSPYATDQHASWPLLRELGQEQSFLWLVSGDFNEILYSFEKSGGQPREERR 158
Query: 244 MEDFREVTEDIGLQDLGF---------------------NVKAGWKASNGSHDDFAESLR 303
M FRE + L DLGF VK W++SNGS +E L
Sbjct: 159 MAAFRETLDACHLMDLGFQGICPRFKFKAWWTLEESFEIEVKKSWESSNGS---ISEKLE 218
Query: 304 GCKNQLWNWGRRLKNE----KWRAIQRIRLLIREEFSRKKNPNFGQIRELEGDLDALILA 349
+ L +W +K K + + + L+ E + N ++ + L+ I
Sbjct: 219 RLQTSLTSWASSIKKGIDGLKKKLTKELETLLNNE---RNNETMARLIDTRIHLNMEIDK 278
BLAST of Sed0017813 vs. NCBI nr
Match:
MBA0754491.1 (hypothetical protein [Gossypium gossypioides])
HSP 1 Score: 116.7 bits (291), Expect = 4.4e-22
Identity = 102/381 (26.77%), Postives = 182/381 (47.77%), Query Frame = 0
Query: 13 DIRGIVDVDGVLVGE-VMVKDGGRRNVSEVIKEGG-INEAKAHLKEGQKNVLRLNYDVTK 72
+IRG+ + ++VGE + K G R++ + +++G ++E K+ E +K+ R+ T
Sbjct: 249 EIRGVQENSELMVGEGKLKKQGLYRSMEDEMEDGSKVSECKSVNHEKKKSWKRIKPGATV 308
Query: 73 LKDS-----KEFESIDVEL-KDNEVVSDTDDCKEVK-------ARKFRRFKQSNERDGSS 132
L+ ++ +S + +L + +V+S+TD K +K F + +
Sbjct: 309 LQSKIENCMRKRKSPEEDLVRSEKVISETDGTKRLKHDNIDGSGMDFLEVMVDSSEQSDT 368
Query: 133 HTDMDIIKGKRKLEIEEETGVADCIDLS-----GGLSLFWSNDMDLQILSSSKNHIDCDI 192
+ KR+ G + ID++ GGL L W D+++ + S S NH+D +
Sbjct: 369 QNLLRSAAAKRR-----RCGFPNGIDITAEGSRGGLCLAWKGDIEISLQSYSTNHVDVMV 428
Query: 193 --SMNDIKWHFSGMYGFLINHLKELTWNLLRGLSLNVEVSWLVGGDFNEMLWSYEKKGGS 252
++ +W F+G YG + K TWNLL+ L N WLV GDFNE+++SYEK GG
Sbjct: 429 KEGTDEEEWRFTGFYGSPYANNKSDTWNLLKKLGQNRNHPWLVSGDFNEIMYSYEKCGGV 488
Query: 253 HETSHCMEDFREVTEDIGLQDLGF-------------------NVKAGWKASNGSHDDFA 312
ME FREV E+ L+DLG+ ++ W+ ++GS
Sbjct: 489 PREESRMEAFREVLEEYLLEDLGYSGVWFTWEREICRIQILEKDLTGVWQMTSGSSYSQW 548
Query: 313 ESLRGCKNQLWNWGRR----LKNEKWRAIQRIRLLIREEFSRKKNPNFGQIRELEGDLDA 349
+ +W +R LK + + I+++ +L+ +E + + +I + + L+
Sbjct: 549 AIQNSNSKRSGSWRKRLRKLLKILRSQLIKQLDMLMEQE---RTDDTMVKILDTKIHLNM 608
BLAST of Sed0017813 vs. NCBI nr
Match:
XP_030939479.1 (uncharacterized protein LOC115964277 [Quercus lobata])
HSP 1 Score: 116.3 bits (290), Expect = 5.7e-22
Identity = 78/257 (30.35%), Postives = 123/257 (47.86%), Query Frame = 0
Query: 135 ETGVADCIDLSGGLSLFWSNDMDLQILSSSKNHIDCDISM-NDIKWHFSGMYGFLINHLK 194
ET V + +GGL+L W N + + + SSS NHID ++ + W F+G+YGFL K
Sbjct: 13 ETWVVPRVTRAGGLALLWKNTIQIDVDSSSLNHIDIIVNKGKEDSWRFTGIYGFLEASRK 72
Query: 195 ELTWNLLRGLSLNVEVSWLVGGDFNEMLWSYEKKGGSHETSHCMEDFREVTEDIGLQDLG 254
TWNLLR L + WL GDFNE+L S+EK GG ++ M +FREV +D G DLG
Sbjct: 73 SDTWNLLRNLHRKYTLPWLCAGDFNEILMSHEKLGGGLRSAATMSEFREVVDDCGFMDLG 132
Query: 255 F-NVKAGWKASN-------------GSHDDFAESL------------------------- 314
+ K W+ +H A++
Sbjct: 133 YVGKKYTWRGKRVDTMVLERLDRALATHSWLAQNPATRVQCIRSNVSDHYPIIINPKGVA 192
Query: 315 -RGCKN-QLWNWGRR-LKNEKWRAIQRIRLLIREEFSRKKNPNFGQIRELEGDLDALILA 349
R CK +L W +R + + + ++ +LL + EF+ + ++ +R L+ +++ L+
Sbjct: 193 DRPCKPFRLMEWSKRSFGSVRKQLEEKSKLLEKAEFAATRGADYEPVRLLKLEVNELLDK 252
BLAST of Sed0017813 vs. ExPASy TrEMBL
Match:
A0A5B6VTW0 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_023080 PE=4 SV=1)
HSP 1 Score: 119.8 bits (299), Expect = 2.5e-23
Identity = 80/257 (31.13%), Postives = 120/257 (46.69%), Query Frame = 0
Query: 124 IKGKRKLEIEEETGVADCIDL-----SGGLSLFWSNDMDLQILSSSKNHIDCDISMNDIK 183
I KR I + +G + ID+ GGL L W ++++ + + SK+HID I N+I+
Sbjct: 39 INDKRMERIRKRSGFVNGIDVGAEGSKGGLCLAWREEVNVSLRTFSKSHIDVLIEDNNIR 98
Query: 184 --WHFSGMYGFLINHLKELTWNLLRGLSLNVEVSWLVGGDFNEMLWSYEKKGGSHETSHC 243
W F+G YG + +W LLR L WLV GDFNE+L+S+EK GG
Sbjct: 99 AEWRFTGFYGSPYATDQHASWPLLRELGQEQSFLWLVSGDFNEILYSFEKSGGQPREERR 158
Query: 244 MEDFREVTEDIGLQDLGF---------------------NVKAGWKASNGSHDDFAESLR 303
M FRE + L DLGF VK W++SNGS +E L
Sbjct: 159 MAAFRETLDACHLMDLGFQGICPRFKFKAWWTLEESFEIEVKKSWESSNGS---ISEKLE 218
Query: 304 GCKNQLWNWGRRLKNE----KWRAIQRIRLLIREEFSRKKNPNFGQIRELEGDLDALILA 349
+ L +W +K K + + + L+ E + N ++ + L+ I
Sbjct: 219 RLQTSLTSWASSIKKGIDGLKKKLTKELETLLNNE---RNNETMARLIDTRIHLNMEIDK 278
BLAST of Sed0017813 vs. ExPASy TrEMBL
Match:
A0A7J9D1F6 (CCHC-type domain-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_021309 PE=4 SV=1)
HSP 1 Score: 116.7 bits (291), Expect = 2.1e-22
Identity = 102/381 (26.77%), Postives = 182/381 (47.77%), Query Frame = 0
Query: 13 DIRGIVDVDGVLVGE-VMVKDGGRRNVSEVIKEGG-INEAKAHLKEGQKNVLRLNYDVTK 72
+IRG+ + ++VGE + K G R++ + +++G ++E K+ E +K+ R+ T
Sbjct: 249 EIRGVQENSELMVGEGKLKKQGLYRSMEDEMEDGSKVSECKSVNHEKKKSWKRIKPGATV 308
Query: 73 LKDS-----KEFESIDVEL-KDNEVVSDTDDCKEVK-------ARKFRRFKQSNERDGSS 132
L+ ++ +S + +L + +V+S+TD K +K F + +
Sbjct: 309 LQSKIENCMRKRKSPEEDLVRSEKVISETDGTKRLKHDNIDGSGMDFLEVMVDSSEQSDT 368
Query: 133 HTDMDIIKGKRKLEIEEETGVADCIDLS-----GGLSLFWSNDMDLQILSSSKNHIDCDI 192
+ KR+ G + ID++ GGL L W D+++ + S S NH+D +
Sbjct: 369 QNLLRSAAAKRR-----RCGFPNGIDITAEGSRGGLCLAWKGDIEISLQSYSTNHVDVMV 428
Query: 193 --SMNDIKWHFSGMYGFLINHLKELTWNLLRGLSLNVEVSWLVGGDFNEMLWSYEKKGGS 252
++ +W F+G YG + K TWNLL+ L N WLV GDFNE+++SYEK GG
Sbjct: 429 KEGTDEEEWRFTGFYGSPYANNKSDTWNLLKKLGQNRNHPWLVSGDFNEIMYSYEKCGGV 488
Query: 253 HETSHCMEDFREVTEDIGLQDLGF-------------------NVKAGWKASNGSHDDFA 312
ME FREV E+ L+DLG+ ++ W+ ++GS
Sbjct: 489 PREESRMEAFREVLEEYLLEDLGYSGVWFTWEREICRIQILEKDLTGVWQMTSGSSYSQW 548
Query: 313 ESLRGCKNQLWNWGRR----LKNEKWRAIQRIRLLIREEFSRKKNPNFGQIRELEGDLDA 349
+ +W +R LK + + I+++ +L+ +E + + +I + + L+
Sbjct: 549 AIQNSNSKRSGSWRKRLRKLLKILRSQLIKQLDMLMEQE---RTDDTMVKILDTKIHLNM 608
BLAST of Sed0017813 vs. ExPASy TrEMBL
Match:
A0A5B6VH75 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_014434 PE=4 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 6.2e-22
Identity = 79/278 (28.42%), Postives = 130/278 (46.76%), Query Frame = 0
Query: 127 KRKLEIEEETGVADCIDLS-----GGLSLFWSNDMDLQILSSSKNHIDCDISM--NDIKW 186
KR ++ + G+ + D+ GGL L W D+D+ + S SK H+D I N +W
Sbjct: 8 KRMEKVRKSCGLLNGFDVEAEGTRGGLCLAWKEDIDVTLRSFSKWHMDVLIKEDGNQEEW 67
Query: 187 HFSGMYGFLINHLKELTWNLLRGLSLNVEVSWLVGGDFNEMLWSYEKKGGSHETSHCMED 246
F+G+YG + + WNLL+ LS WLV GDFNE+++S+EKKGG + ME
Sbjct: 68 RFTGLYGSPYLKDQNVVWNLLKRLSREGNYPWLVVGDFNEIMYSFEKKGGLPRDNKRMEI 127
Query: 247 FREVTEDIGLQDLGFN-------------------------------------------- 306
FR+ ED L D+GF+
Sbjct: 128 FRDTLEDCNLMDIGFSGVWQYYSTSDHCPLLISTDCESRIHRAKDFYFEVWWTMEDTFEE 187
Query: 307 -VKAGWKASNGSHDDFAESLRGCKNQLWNWGRRLKNEKW----RAIQRIRLLIREEFSRK 349
+K W++S+GS + L+ + +L W ++K +K + + + L++E+ +
Sbjct: 188 TLKEIWESSSGS---MVDKLKNLQIRLTKWANKVKGKKGELRKQLSKELENLMKED---R 247
BLAST of Sed0017813 vs. ExPASy TrEMBL
Match:
A0A2N9GKW3 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30968 PE=4 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 6.2e-22
Identity = 76/235 (32.34%), Postives = 118/235 (50.21%), Query Frame = 0
Query: 138 VADCIDLSGGLSLFWSNDMDLQILSSSKNHIDCDISMND-IKWHFSGMYGFLINHLKELT 197
+A + GGL LFW ++ L++ S S +HID ++ + W F+G YG H +E +
Sbjct: 352 IAQSRNKGGGLCLFWKKEVKLRVYSFSHSHIDAIVNEHQPDAWRFTGFYGAPETHKREES 411
Query: 198 WNLLRGLSLNVEVSWLVGGDFNEMLWSYEKKGGSHETSHCMEDFREVTEDIGLQDLGF-N 257
WNLLR L++ ++ W GDFNE++ EK G + + M+ FR+V ++ G DLGF
Sbjct: 412 WNLLRRLNVQFKLPWCCMGDFNELVRIEEKHGRHNRSERQMQLFRDVLDECGFVDLGFAG 471
Query: 258 VKAGWKASNGSHDDFAESL-RGCKNQLW-------------NWGRRLK--------NEKW 317
K W +N D E L R +W W R L+ N K
Sbjct: 472 PKFTW-TNNRPRDMTWERLDRAVATPIWLLQFPSARVLHLKGWWRSLRSWSRNSFGNIKA 531
Query: 318 RAIQRIRLLIREEFSRKKNPNFGQIRELEGDLDALILAEEKYWKQRSRIGWLRWG 349
R + RLL + E + + + ++ +L G+L +L+ EE+ W+QRSR WL+ G
Sbjct: 532 RIKEVERLLRQAEENSMQGRDHHRVSKLRGELHSLLAKEERLWRQRSRAEWLQAG 585
BLAST of Sed0017813 vs. ExPASy TrEMBL
Match:
A0A5B6WPQ1 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_005994 PE=4 SV=1)
HSP 1 Score: 114.8 bits (286), Expect = 8.1e-22
Identity = 81/263 (30.80%), Postives = 116/263 (44.11%), Query Frame = 0
Query: 146 GGLSLFWSNDMDLQILSSSKNHIDCDIS--MNDIKWHFSGMYGFLINHLKELTWNLLRGL 205
GGLSL W+ + + + S S HID D++ N +KW +G YG I L+ ++W+LLR L
Sbjct: 23 GGLSLGWNGNSLISLRSYSPFHIDADVNDCDNGVKWRLTGFYGNPIERLRSMSWDLLRHL 82
Query: 206 SLNVEVSWLVGGDFNEMLWSYEKKGGSHETSHCMEDFREVTEDIGLQDLG---------- 265
+ WLV GDFNE+ SYEK+GG + + M FR+ ED GL DLG
Sbjct: 83 HNSNYGPWLVLGDFNEITSSYEKRGGRFRSENQMSKFRDALEDCGLIDLGYRGRWYTWER 142
Query: 266 ----------------------------------FNVKAGWKASNGSHDDFAESLRGCKN 325
F +A W + ++ GC N
Sbjct: 143 GRFQETNIHERLDRGVANDTLDTIHDRENYRGHRFLFEASWCLDQSFDEVVKQAWAGCNN 202
Query: 326 QLWN-----------WGRRLKNEKWRAIQRIRLLIREEFSRKKNP---NFGQIRELEGDL 349
+ W R EK R QR+ + R + +KNP N +I E++ DL
Sbjct: 203 NAVDKLAKAGQFFRFWSRTRSREKKR--QRVMMEERLSYLYEKNPTDKNLEEIMEVQLDL 262
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5B6VTW0 | 2.5e-23 | 31.13 | Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_023080 PE=4 SV=1 | [more] |
A0A7J9D1F6 | 2.1e-22 | 26.77 | CCHC-type domain-containing protein OS=Gossypium gossypioides OX=34282 GN=Gogos_... | [more] |
A0A5B6VH75 | 6.2e-22 | 28.42 | Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_014434 PE=4 SV=1 | [more] |
A0A2N9GKW3 | 6.2e-22 | 32.34 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A5B6WPQ1 | 8.1e-22 | 30.80 | Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_005994 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |