Sed0017511 (gene) Chayote v1

Overview


Name	Sed0017511
Type	gene
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S27
Location	LG07: 1314644 .. 1316177 (+)
RNA-Seq Expression	Sed0017511
Synteny	Sed0017511

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCACTTAAAAAACTAAAGGCTGAGATTTATTTCTAACGAAATCCAACGGTTCACAATTCTCAACCGAATCCCTTATATAAAACCTAAACGACGCTCTGTTCCTCCTTCACAGCATTCATCGCGAACTCTTGTTGGGATTTTAGGGTTCGCGATCCAAACAATTCGATTCTGATCAACATGGTAAGCTCCAAAATCTCACTTCTACATTCAATTACGCCTTTTCTTAATCTATTGTTGAATCAATTTTGATTATATTTGCAGGTTCTTCAAAACGATATTGATTTGCTCAATCCTCCGGCCGAGCTTGAGAAGAAAAAGCACAAGCTTAAGCGGCTTGTACAGTCGCCCAACTCGTTCTTCATGGTATGTTGTTGATTCCTGTAAATCCTTTTGCCTTTAATGTATTATCCGATTGTTAGTGATCGAGCTGTTCTGGGAACTCTGTGTGCAGGATGTGAAATGTCAGGGTTGCTTTAACATGTAAGTTTACAAGTTTTTTTTTGGTAAATTATAAGTTTCGACCTCATCATTTCAAGAAAGTTAGACCCTATGATTGAATAAAGTTAAAATTATGGTTTTAAAAACTAGAGTTTAGTACTACGGTTTTATAATACAGTTAGGAATTGCACAATTTCGTCATTCATCCATGAATAATTGATTTTTAAGTTCTTAATTTGCTAGAATTACCAAGGATTATTTTTTAGCTTTTATCAAAGCATATGGACTAATTTATAGTATTTATAACCCTAGGGACTAAATTCTAACTTTGTTAAAACCATAGAGATTAGAAATTATAGGGGCCATTATTCAAAAAAAGAAACTATAGGGACCCGACTTTTAATTTACCCATTATTTCATGTTCTCAAGGGGTGACGCAGTGATTGAAGACTTGGGTTTTGAGGGCTTGCTCCTCTCAAGGTACCAGGTTCGAAAATCACTTGTGACATTACTCCTTCGATGTCTCTGATGCCTGGCTTAGGGATGGGCGTGGTTACCTTATTTAAAAAAAAAAAAATTTACCCTTTTTTCATGTATTATTGTTACTTGATCTTCTTTTTATGCTTGAAGTTGTTGAAAATTGGTTCTTAAATGAGTAATGACGCATAACTCTTTGAATGAATTACAGAACCACTGTGTTTAGTCATTCACAATCGGTCGTAGTATGTGGGAATTGCCAGGCGGTTTTGTGTCAGCCGACTGGAGGCCGAGCTAGGCTCACAGAAGGATGCTCCTTTAGAAGAAAGGGCGACTAATTCCTTGGCTCAGAATTGGCTTCTAGTAGGATCAGGACGGGTGGGTTTTTCGAATTTTTGATATTGCAATTGAGCAGATTTTGTCTGTTTTCTATGTTTTGGTTCTTGAATATTTAATTTTGATTAAGAAGAAGAGCATTTTGGCATCGCTGTTGCAGTTCGTTAATTTTAATGTTGTCAATGAAACTCAGTTTTGTTTGAAGTATTTCGCATTTAGTGTTTTGCGTGTTCCCATATACTTATTCAATTGATTGGAATATTTTGATCTTGTTGAATTCA

mRNA sequence

AGGCACTTAAAAAACTAAAGGCTGAGATTTATTTCTAACGAAATCCAACGGTTCACAATTCTCAACCGAATCCCTTATATAAAACCTAAACGACGCTCTGTTCCTCCTTCACAGCATTCATCGCGAACTCTTGTTGGGATTTTAGGGTTCGCGATCCAAACAATTCGATTCTGATCAACATGGTTCTTCAAAACGATATTGATTTGCTCAATCCTCCGGCCGAGCTTGAGAAGAAAAAGCACAAGCTTAAGCGGCTTGTACAGTCGCCCAACTCGTTCTTCATGGATGTGAAATGTCAGGGTTGCTTTAACATAACCACTGTGTTTAGTCATTCACAATCGGTCGTAGTATGTGGGAATTGCCAGGCGGTTTTGTGTCAGCCGACTGGAGGCCGAGCTAGGCTCACAGAAGGATGCTCCTTTAGAAGAAAGGGCGACTAATTCCTTGGCTCAGAATTGGCTTCTAGTAGGATCAGGACGGGTGGGTTTTTCGAATTTTTGATATTGCAATTGAGCAGATTTTGTCTGTTTTCTATGTTTTGGTTCTTGAATATTTAATTTTGATTAAGAAGAAGAGCATTTTGGCATCGCTGTTGCAGTTCGTTAATTTTAATGTTGTCAATGAAACTCAGTTTTGTTTGAAGTATTTCGCATTTAGTGTTTTGCGTGTTCCCATATACTTATTCAATTGATTGGAATATTTTGATCTTGTTGAATTCA

Coding sequence (CDS)

ATGGTTCTTCAAAACGATATTGATTTGCTCAATCCTCCGGCCGAGCTTGAGAAGAAAAAGCACAAGCTTAAGCGGCTTGTACAGTCGCCCAACTCGTTCTTCATGGATGTGAAATGTCAGGGTTGCTTTAACATAACCACTGTGTTTAGTCATTCACAATCGGTCGTAGTATGTGGGAATTGCCAGGCGGTTTTGTGTCAGCCGACTGGAGGCCGAGCTAGGCTCACAGAAGGATGCTCCTTTAGAAGAAAGGGCGACTAA

Protein sequence

MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGNCQAVLCQPTGGRARLTEGCSFRRKGD

Homology

[Close]

BLAST of Sed0017511 vs. NCBI nr
Match: XP_006446889.1 (40S ribosomal protein S27-2 [Citrus clementina] >XP_006446892.1 40S ribosomal protein S27-2 [Citrus clementina] >XP_006468930.1 40S ribosomal protein S27-2 [Citrus sinensis] >XP_006468931.1 40S ribosomal protein S27-2 [Citrus sinensis] >GAY61583.1 hypothetical protein CUMW_211090 [Citrus unshiu] >ESR60129.1 hypothetical protein CICLE_v10017335mg [Citrus clementina] >ESR60132.1 hypothetical protein CICLE_v10017332mg [Citrus clementina] >GAY65076.1 hypothetical protein CUMW_238430 [Citrus unshiu] >GAY65077.1 hypothetical protein CUMW_238430 [Citrus unshiu])

HSP 1 Score: 178.7 bits (452), Expect = 2.1e-41
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Sed0017511 vs. NCBI nr
Match: GAY68717.1 (hypothetical protein CUMW_266320 [Citrus unshiu])

HSP 1 Score: 178.7 bits (452), Expect = 2.1e-41
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
           MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 209 MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 268

Query: 61  CQAVLCQPTGGRARLTEGCSFRRKGD 87
           CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 269 CQSVLCQPTGGRARLTEGCSFRRKGD 294

[Close]

BLAST of Sed0017511 vs. NCBI nr
Match: ACH63219.1 (ribosomal protein S27-like protein [Rheum australe])

HSP 1 Score: 178.3 bits (451), Expect = 2.8e-41
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLLNPP ELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 1  MVLQNDIDLLNPPVELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRKGD 87
          CQAVLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQAVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Sed0017511 vs. NCBI nr
Match: XP_010695944.1 (PREDICTED: 40S ribosomal protein S27-2 [Beta vulgaris subsp. vulgaris] >XP_018841624.1 40S ribosomal protein S27-2-like [Juglans regia] >XP_019102624.1 PREDICTED: 40S ribosomal protein S27-2 [Beta vulgaris subsp. vulgaris] >XP_021853390.1 40S ribosomal protein S27-2 [Spinacia oleracea] >XP_021863096.1 40S ribosomal protein S27-2 [Spinacia oleracea] >XP_022759882.1 40S ribosomal protein S27-2 [Durio zibethinus] >XP_022759883.1 40S ribosomal protein S27-2 [Durio zibethinus] >XP_022759884.1 40S ribosomal protein S27-2 [Durio zibethinus] >XP_024017206.1 40S ribosomal protein S27-2 [Morus notabilis] >XP_024025566.1 40S ribosomal protein S27-2 [Morus notabilis] >XP_030491192.1 40S ribosomal protein S27-2 [Cannabis sativa] >XP_030492284.1 40S ribosomal protein S27-2 [Cannabis sativa] >XP_030492465.1 40S ribosomal protein S27-2 [Cannabis sativa] >XP_038689446.1 40S ribosomal protein S27-2 [Tripterygium wilfordii] >XP_038691025.1 40S ribosomal protein S27-2 [Tripterygium wilfordii] >XP_038692723.1 40S ribosomal protein S27-2 isoform X2 [Tripterygium wilfordii] >XP_038702769.1 40S ribosomal protein S27-2 [Tripterygium wilfordii] >XP_038712251.1 40S ribosomal protein S27-2 [Tripterygium wilfordii] >XP_038714176.1 40S ribosomal protein S27-2 [Tripterygium wilfordii] >XP_041014362.1 40S ribosomal protein S27-2-like [Juglans microcarpa x Juglans regia] >XP_042982995.1 40S ribosomal protein S27-2-like [Carya illinoinensis] >PON47418.1 Ribosomal protein [Trema orientale] >PON54862.1 Ribosomal protein [Parasponia andersonii] >KAF4363561.1 hypothetical protein F8388_002102 [Cannabis sativa] >KAF4364909.1 hypothetical protein F8388_020623 [Cannabis sativa] >KAF4372092.1 hypothetical protein F8388_000308 [Cannabis sativa])

HSP 1 Score: 178.3 bits (451), Expect = 2.8e-41
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRKGD 87
          CQ VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Sed0017511 vs. NCBI nr
Match: KAF5741232.1 (40S ribosomal protein S27-2 [Tripterygium wilfordii])

HSP 1 Score: 178.3 bits (451), Expect = 2.8e-41
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1   MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
           MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 49  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 108

Query: 61  CQAVLCQPTGGRARLTEGCSFRRKGD 87
           CQ VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 109 CQTVLCQPTGGRARLTEGCSFRRKGD 134

[Close]

BLAST of Sed0017511 vs. ExPASy Swiss-Prot
Match: Q9M2F1 (40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2)

HSP 1 Score: 174.5 bits (441), Expect = 5.2e-43
Identity = 80/86 (93.02%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRKGD 87
          CQ +LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Sed0017511 vs. ExPASy Swiss-Prot
Match: Q96564 (40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-40
Identity = 79/86 (91.86%), Postives = 81/86 (94.19%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVC  
Sbjct: 1  MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPG 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRKGD 87
          CQ VLCQPTGG+ARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGKARLTEGCSFRRKGD 86

[Close]

BLAST of Sed0017511 vs. ExPASy Swiss-Prot
Match: O64650 (40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.2e-40
Identity = 75/84 (89.29%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRK 85
          CQ +LC PTGG+A+LTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Sed0017511 vs. ExPASy Swiss-Prot
Match: Q8L953 (40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2)

HSP 1 Score: 164.5 bits (415), Expect = 5.4e-40
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLL+PP ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRK 85
          CQ VLCQPTGG+ARL EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Sed0017511 vs. ExPASy Swiss-Prot
Match: P47903 (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-36
Identity = 72/86 (83.72%), Postives = 77/86 (89.53%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVL +DIDLLNPPAELEK KHK KRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VV+CG+
Sbjct: 1  MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGS 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRKGD 87
          C +VLC PTG   RLTEGCSFRRK D
Sbjct: 61 CSSVLCTPTGWPRRLTEGCSFRRKSD 86

[Close]

BLAST of Sed0017511 vs. ExPASy TrEMBL
Match: A0A2H5QKC8 (40S ribosomal protein S27 OS=Citrus unshiu OX=55188 GN=CUMW_211090 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.0e-41
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Sed0017511 vs. ExPASy TrEMBL
Match: V4W2J8 (40S ribosomal protein S27 OS=Citrus clementina OX=85681 GN=CICLE_v10017332mg PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.0e-41
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRKGD 87
          CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQSVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Sed0017511 vs. ExPASy TrEMBL
Match: A0A2H5QVV3 (40S ribosomal protein S27 OS=Citrus unshiu OX=55188 GN=CUMW_266320 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.0e-41
Identity = 84/86 (97.67%), Postives = 86/86 (100.00%), Query Frame = 0


Query: 1   MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
           MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 209 MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 268

Query: 61  CQAVLCQPTGGRARLTEGCSFRRKGD 87
           CQ+VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 269 CQSVLCQPTGGRARLTEGCSFRRKGD 294

[Close]

BLAST of Sed0017511 vs. ExPASy TrEMBL
Match: A0A0K9QTH7 (40S ribosomal protein S27 OS=Spinacia oleracea OX=3562 GN=SOVF_029410 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-41
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRKGD 87
          CQ VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Sed0017511 vs. ExPASy TrEMBL
Match: A0A7J6FN08 (40S ribosomal protein S27 OS=Cannabis sativa OX=3483 GN=F8388_000308 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-41
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRKGD 87
          CQ VLCQPTGGRARLTEGCSFRRKGD
Sbjct: 61 CQTVLCQPTGGRARLTEGCSFRRKGD 86

[Close]

BLAST of Sed0017511 vs. TAIR 10
Match: AT3G61110.1 (ribosomal protein S27 )

HSP 1 Score: 174.5 bits (441), Expect = 3.7e-44
Identity = 80/86 (93.02%), Postives = 85/86 (98.84%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRKGD 87
          CQ +LCQPTGG+A+LTEGCSFRRKGD
Sbjct: 61 CQTILCQPTGGKAKLTEGCSFRRKGD 86

[Close]

BLAST of Sed0017511 vs. TAIR 10
Match: AT2G45710.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 164.9 bits (416), Expect = 3.0e-41
Identity = 75/84 (89.29%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VV+CGN
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGN 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRK 85
          CQ +LC PTGG+A+LTEGCSFR+K
Sbjct: 61 CQTLLCTPTGGKAKLTEGCSFRKK 84

[Close]

BLAST of Sed0017511 vs. TAIR 10
Match: AT5G47930.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 164.5 bits (415), Expect = 3.9e-41
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLL+PP ELEK+KHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQ+VVVCGN
Sbjct: 1  MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGN 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRK 85
          CQ VLCQPTGG+ARL EGCSFR+K
Sbjct: 61 CQTVLCQPTGGKARLQEGCSFRKK 84

[Close]

BLAST of Sed0017511 vs. TAIR 10
Match: AT3G61111.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 146.4 bits (368), Expect = 1.1e-35
Identity = 68/86 (79.07%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 1  MVLQNDIDLLNPPAELEKKKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQSVVVCGN 60
          MVLQNDIDLLNPPAELEK+KHKLKRLV SPNS+FM V+C  C NITT+FSHSQ+VVVCG 
Sbjct: 1  MVLQNDIDLLNPPAELEKRKHKLKRLVPSPNSYFMLVRCSDCINITTIFSHSQTVVVCGK 60

Query: 61 CQAVLCQPTGGRARLTEGCSFRRKGD 87
          CQ VLCQPTGG+A+LT GCSFR+  D
Sbjct: 61 CQNVLCQPTGGKAKLTVGCSFRKLTD 86

The following BLAST results are available for this feature:

BLAST of Sed0017511 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_006446889.1	2.1e-41	97.67	40S ribosomal protein S27-2 [Citrus clementina] >XP_006446892.1 40S ribosomal pr...	[more]
GAY68717.1	2.1e-41	97.67	hypothetical protein CUMW_266320 [Citrus unshiu]	[more]
ACH63219.1	2.8e-41	97.67	ribosomal protein S27-like protein [Rheum australe]	[more]
XP_010695944.1	2.8e-41	97.67	PREDICTED: 40S ribosomal protein S27-2 [Beta vulgaris subsp. vulgaris] >XP_01884...	[more]
KAF5741232.1	2.8e-41	97.67	40S ribosomal protein S27-2 [Tripterygium wilfordii]	[more]

BLAST of Sed0017511 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2F1	5.2e-43	93.02	40S ribosomal protein S27-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27B PE=2 SV=2	[more]
Q96564	1.1e-40	91.86	40S ribosomal protein S27 OS=Hordeum vulgare OX=4513 GN=RPS27 PE=3 SV=2	[more]
O64650	4.2e-40	89.29	40S ribosomal protein S27-1 OS=Arabidopsis thaliana OX=3702 GN=RPS27A PE=3 SV=1	[more]
Q8L953	5.4e-40	90.48	40S ribosomal protein S27-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27D PE=2 SV=2	[more]
P47903	1.6e-36	83.72	40S ribosomal protein S27 OS=Chlamydomonas reinhardtii OX=3055 GN=RPS27 PE=3 SV=...	[more]

BLAST of Sed0017511 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H5QKC8	1.0e-41	97.67	40S ribosomal protein S27 OS=Citrus unshiu OX=55188 GN=CUMW_211090 PE=3 SV=1	[more]
V4W2J8	1.0e-41	97.67	40S ribosomal protein S27 OS=Citrus clementina OX=85681 GN=CICLE_v10017332mg PE=...	[more]
A0A2H5QVV3	1.0e-41	97.67	40S ribosomal protein S27 OS=Citrus unshiu OX=55188 GN=CUMW_266320 PE=3 SV=1	[more]
A0A0K9QTH7	1.3e-41	97.67	40S ribosomal protein S27 OS=Spinacia oleracea OX=3562 GN=SOVF_029410 PE=3 SV=1	[more]
A0A7J6FN08	1.3e-41	97.67	40S ribosomal protein S27 OS=Cannabis sativa OX=3483 GN=F8388_000308 PE=3 SV=1	[more]

BLAST of Sed0017511 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G61110.1	3.7e-44	93.02	ribosomal protein S27	[more]
AT2G45710.1	3.0e-41	89.29	Zinc-binding ribosomal protein family protein	[more]
AT5G47930.1	3.9e-41	90.48	Zinc-binding ribosomal protein family protein	[more]
AT3G61111.1	1.1e-35	79.07	Zinc-binding ribosomal protein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000592	Ribosomal protein S27	PFAM	PF01667	Ribosomal_S27e	coord: 30..84 e-value: 9.3E-27 score: 92.5
IPR000592	Ribosomal protein S27	PANTHER	PTHR11594	40S RIBOSOMAL PROTEIN S27	coord: 2..85
IPR000592	Ribosomal protein S27	PROSITE	PS01168	RIBOSOMAL_S27E	coord: 38..70
IPR000592	Ribosomal protein S27	HAMAP	MF_00371	Ribosomal_S27e	coord: 24..84 score: 16.56407
IPR023407	Ribosomal protein S27, zinc-binding domain superfamily	GENE3D	2.20.25.100		coord: 5..85 e-value: 4.2E-48 score: 163.2
None	No IPR available	PANTHER	PTHR11594:SF7	40S RIBOSOMAL PROTEIN S27-RELATED	coord: 2..85
IPR011332	Zinc-binding ribosomal protein	SUPERFAMILY	57829	Zn-binding ribosomal proteins	coord: 30..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017511.1	Sed0017511.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome