Sed0017448 (gene) Chayote v1

Overview


Name	Sed0017448
Type	gene
Organism	Sechium edule (Chayote v1)
Description	nigrin b-like
Location	LG04: 30895610 .. 30896802 (-)
RNA-Seq Expression	Sed0017448
Synteny	Sed0017448

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAAGATGACAAAAGTTGCAATATGCATCATTGTTGGGCTTTTTGCAATGGCTGCCTCCAATACCATGGCTGAGGACATTGATTATGTCCAAAGCAATAACATACCGATACATATTTCAATTGGACAATCTAAACATAAGAAGTGTTTGGATTTCAACCCTCCTTTGTACAATAGCATGAACTACGACTTCAACGTTCCAGCCGAACTACTACCATGCACGAACGAGAGACCGAGTCAATCCTGGATTTATTCTCAAGACCAGTCTATTAAAACTGTAGCCGAAGTACCCTTGTGCTTGATCTATGACCCCTACGTCAATCAACAAACCCCTGCTACCGTAAGGGCTTGCCATAAATCGAGCGAAGAAGCGAAGAAATGGAAGATCTGGCCGGATGGCACCATCACCCACCTCGCCACGCCCCGCCATGTCCTCACATCGTCTTTTTCTGTACCGCATTCGCGTGTGAATGTCGAGCAAAACACATATGCTGCATCCCAGGGTTGGGAATTCTATTTTAGTAACCAAAAAGAATGAATAAGGCCTATGGGAATGTCAATCCACACAAAGTCTATGCAAGTGCATGCATGCATGTGCCCTAATAAGCTTTGTAATATTAGTTGTGTTGTAATGGTTGACCCTTTATCCAAAAGCAATAAATAAGTGTGGATGTGTGTTTATGATTTGGATTGTTTCTCAAACTTAAGTATAATTCAATTTGGTATGACAAACAGTTTTGTATTTAATTAAAAAAACTTGTAAATAAAACTATTAGAATAGTTTTTCAAAACACAATTATTTAAAATATTCCTTTCATTTGATCTTCAACATCAACGGTGAATGTTTTGAGTTGGGATAAATCACCTCCAAAACTGAGAATAATCTAGGCATTGATGTGGTGCAAGCCACGTAACCTCCGATGTTTATGTTAGGTTCGGGCAACAAAAGGGTCTAATAGAATATCCGTTTCTAGATTTTTAGAGCTTACCTCTTATGTTTTCCGTCTAAATTATTTTTAAGGGTCTAGGGGCTGGCGAGCTAGGCCCAACCCTTCACGGGCCAAGGGTCGAACTAAATCTGACCCTTCACGGGCTAGGCTCGGACCTATTTTTGGCGGATTCCAACCTCTTATGAGCTTGAGTTACGCCTCGAGCTCTTTTAGCTTGCTGGTCTCATTAGACTTTGGCTGA

mRNA sequence

ATGATGAAGATGACAAAAGTTGCAATATGCATCATTGTTGGGCTTTTTGCAATGGCTGCCTCCAATACCATGGCTGAGGACATTGATTATGTCCAAAGCAATAACATACCGATACATATTTCAATTGGACAATCTAAACATAAGAAGTGTTTGGATTTCAACCCTCCTTTGTACAATAGCATGAACTACGACTTCAACGTTCCAGCCGAACTACTACCATGCACGAACGAGAGACCGAGTCAATCCTGGATTTATTCTCAAGACCAGTCTATTAAAACTGTAGCCGAAGTACCCTTGTGCTTGATCTATGACCCCTACGTCAATCAACAAACCCCTGCTACCGTAAGGGCTTGCCATAAATCGAGCGAAGAAGCGAAGAAATGGAAGATCTGGCCGGATGGCACCATCACCCACCTCGCCACGCCCCGCCATGTCCTCACATCGTCTTTTTCTGTACCGCATTCGCGTGTGAATGTCGAGCAAAACACATATGCTGCATCCCAGGGGTCTAGGGGCTGGCGAGCTAGGCCCAACCCTTCACGGGCCAAGGGTCGAACTAAATCTGACCCTTCACGGGCTAGGCTCGGACCTATTTTTGGCGGATTCCAACCTCTTATGAGCTTGAGTTACGCCTCGAGCTCTTTTAGCTTGCTGGTCTCATTAGACTTTGGCTGA

Coding sequence (CDS)

ATGATGAAGATGACAAAAGTTGCAATATGCATCATTGTTGGGCTTTTTGCAATGGCTGCCTCCAATACCATGGCTGAGGACATTGATTATGTCCAAAGCAATAACATACCGATACATATTTCAATTGGACAATCTAAACATAAGAAGTGTTTGGATTTCAACCCTCCTTTGTACAATAGCATGAACTACGACTTCAACGTTCCAGCCGAACTACTACCATGCACGAACGAGAGACCGAGTCAATCCTGGATTTATTCTCAAGACCAGTCTATTAAAACTGTAGCCGAAGTACCCTTGTGCTTGATCTATGACCCCTACGTCAATCAACAAACCCCTGCTACCGTAAGGGCTTGCCATAAATCGAGCGAAGAAGCGAAGAAATGGAAGATCTGGCCGGATGGCACCATCACCCACCTCGCCACGCCCCGCCATGTCCTCACATCGTCTTTTTCTGTACCGCATTCGCGTGTGAATGTCGAGCAAAACACATATGCTGCATCCCAGGGGTCTAGGGGCTGGCGAGCTAGGCCCAACCCTTCACGGGCCAAGGGTCGAACTAAATCTGACCCTTCACGGGCTAGGCTCGGACCTATTTTTGGCGGATTCCAACCTCTTATGAGCTTGAGTTACGCCTCGAGCTCTTTTAGCTTGCTGGTCTCATTAGACTTTGGCTGA

Protein sequence

MMKMTKVAICIIVGLFAMAASNTMAEDIDYVQSNNIPIHISIGQSKHKKCLDFNPPLYNSMNYDFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPATVRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNTYAASQGSRGWRARPNPSRAKGRTKSDPSRARLGPIFGGFQPLMSLSYASSSFSLLVSLDFG

Homology

[Close]

BLAST of Sed0017448 vs. NCBI nr
Match: XP_022150387.1 (nigrin b-like [Momordica charantia] >XP_022156716.1 nigrin b-like [Momordica charantia])

HSP 1 Score: 58.9 bits (141), Expect = 6.4e-05
Identity = 48/174 (27.59%), Postives = 89/174 (51.15%), Query Frame = 0


Query: 3   KMTKVAICII-----VGLFAMAASNTMAEDIDYVQSNNIPIHISIGQSKHKKCLDFNPPL 62
           KM  + +C++     VG+  ++A++T    I + +S +I         +   CLD    +
Sbjct: 4   KMMTIVLCLVLAASLVGIHHVSAAHT----IVFSRSTHI-------VGRDGLCLD----V 63

Query: 63  YNSMNYDFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPAT--- 122
               N D ++P +L  C N +  Q W    D +I+++ +   CL+     N ++P +   
Sbjct: 64  IGGYN-DNHIPTQLWTC-NPQNHQLWTIQTDGTIRSMGK---CLV----PNGRSPGSYTM 123

Query: 123 VRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNTYAASQ 169
           +  C+ ++ + K WK++PDGT+ H+ +   VLT+  + PH+   +E NTYAA Q
Sbjct: 124 IDDCNDANPDDKTWKLYPDGTLAHVRSGL-VLTAQATGPHTITTIETNTYAAMQ 152

[Close]

BLAST of Sed0017448 vs. NCBI nr
Match: XP_016903609.1 (PREDICTED: nigrin b-like [Cucumis melo])

HSP 1 Score: 55.8 bits (133), Expect = 5.4e-04
Identity = 33/105 (31.43%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 64  DFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPATVRACHKSSE 123
           D +VP +L PC   + +Q W    D +I+T+ +   CL+ + + +  +   +  C+K+  
Sbjct: 55  DNHVPTQLWPC-GPQNNQLWTIQADGTIRTMGK---CLVPNGH-DPGSYTMIDDCNKADP 114

Query: 124 EAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNTYAASQ 169
             K WK++PDGT+TH+ +   VLTS  +  ++   +E NT A +Q
Sbjct: 115 NDKTWKLYPDGTLTHVRSSL-VLTSQGTGAYAITTIETNTSAPTQ 153

[Close]

BLAST of Sed0017448 vs. NCBI nr
Match: KAA0059853.1 (nigrin b-like [Cucumis melo var. makuwa] >TYK24807.1 nigrin b-like [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 5.4e-04
Identity = 33/105 (31.43%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 64  DFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPATVRACHKSSE 123
           D +VP +L PC   + +Q W    D +I+T+ +   CL+ + + +  +   +  C+K+  
Sbjct: 60  DNHVPTQLWPC-GPQNNQLWTIQADGTIRTMGK---CLVPNGH-DPGSYTMIDDCNKADP 119

Query: 124 EAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNTYAASQ 169
             K WK++PDGT+TH+ +   VLTS  +  ++   +E NT A +Q
Sbjct: 120 NDKTWKLYPDGTLTHVRSSL-VLTSQGTGAYAITTIETNTSAPTQ 158

[Close]

BLAST of Sed0017448 vs. ExPASy TrEMBL
Match: A0A6J1DVT2 (nigrin b-like OS=Momordica charantia OX=3673 GN=LOC111023562 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.1e-05
Identity = 48/174 (27.59%), Postives = 89/174 (51.15%), Query Frame = 0


Query: 3   KMTKVAICII-----VGLFAMAASNTMAEDIDYVQSNNIPIHISIGQSKHKKCLDFNPPL 62
           KM  + +C++     VG+  ++A++T    I + +S +I         +   CLD    +
Sbjct: 4   KMMTIVLCLVLAASLVGIHHVSAAHT----IVFSRSTHI-------VGRDGLCLD----V 63

Query: 63  YNSMNYDFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPAT--- 122
               N D ++P +L  C N +  Q W    D +I+++ +   CL+     N ++P +   
Sbjct: 64  IGGYN-DNHIPTQLWTC-NPQNHQLWTIQTDGTIRSMGK---CLV----PNGRSPGSYTM 123

Query: 123 VRACHKSSEEAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNTYAASQ 169
           +  C+ ++ + K WK++PDGT+ H+ +   VLT+  + PH+   +E NTYAA Q
Sbjct: 124 IDDCNDANPDDKTWKLYPDGTLAHVRSGL-VLTAQATGPHTITTIETNTYAAMQ 152

[Close]

BLAST of Sed0017448 vs. ExPASy TrEMBL
Match: A0A5A7UV90 (Nigrin b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00550 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-04
Identity = 33/105 (31.43%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 64  DFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPATVRACHKSSE 123
           D +VP +L PC   + +Q W    D +I+T+ +   CL+ + + +  +   +  C+K+  
Sbjct: 60  DNHVPTQLWPC-GPQNNQLWTIQADGTIRTMGK---CLVPNGH-DPGSYTMIDDCNKADP 119

Query: 124 EAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNTYAASQ 169
             K WK++PDGT+TH+ +   VLTS  +  ++   +E NT A +Q
Sbjct: 120 NDKTWKLYPDGTLTHVRSSL-VLTSQGTGAYAITTIETNTSAPTQ 158

[Close]

BLAST of Sed0017448 vs. ExPASy TrEMBL
Match: A0A1S4E5V9 (nigrin b-like OS=Cucumis melo OX=3656 GN=LOC107992255 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.6e-04
Identity = 33/105 (31.43%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 64  DFNVPAELLPCTNERPSQSWIYSQDQSIKTVAEVPLCLIYDPYVNQQTPATVRACHKSSE 123
           D +VP +L PC   + +Q W    D +I+T+ +   CL+ + + +  +   +  C+K+  
Sbjct: 55  DNHVPTQLWPC-GPQNNQLWTIQADGTIRTMGK---CLVPNGH-DPGSYTMIDDCNKADP 114

Query: 124 EAKKWKIWPDGTITHLATPRHVLTSSFSVPHSRVNVEQNTYAASQ 169
             K WK++PDGT+TH+ +   VLTS  +  ++   +E NT A +Q
Sbjct: 115 NDKTWKLYPDGTLTHVRSSL-VLTSQGTGAYAITTIETNTSAPTQ 153

The following BLAST results are available for this feature:

BLAST of Sed0017448 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150387.1	6.4e-05	27.59	nigrin b-like [Momordica charantia] >XP_022156716.1 nigrin b-like [Momordica cha...	[more]
XP_016903609.1	5.4e-04	31.43	PREDICTED: nigrin b-like [Cucumis melo]	[more]
KAA0059853.1	5.4e-04	31.43	nigrin b-like [Cucumis melo var. makuwa] >TYK24807.1 nigrin b-like [Cucumis melo...	[more]

BLAST of Sed0017448 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0017448 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVT2	3.1e-05	27.59	nigrin b-like OS=Momordica charantia OX=3673 GN=LOC111023562 PE=3 SV=1	[more]
A0A5A7UV90	2.6e-04	31.43	Nigrin b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00550 ...	[more]
A0A1S4E5V9	2.6e-04	31.43	nigrin b-like OS=Cucumis melo OX=3656 GN=LOC107992255 PE=3 SV=1	[more]

BLAST of Sed0017448 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000772	Ricin B, lectin domain	PFAM	PF00652	Ricin_B_lectin	coord: 43..167 e-value: 8.8E-10 score: 38.9
IPR000772	Ricin B, lectin domain	PROSITE	PS50231	RICIN_B_LECTIN	coord: 36..176 score: 19.393499
IPR000772	Ricin B, lectin domain	CDD	cd00161	RICIN	coord: 42..168 e-value: 8.15092E-11 score: 55.5894
None	No IPR available	GENE3D	2.80.10.50		coord: 39..173 e-value: 9.9E-12 score: 46.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 163..194
IPR035992	Ricin B-like lectins	SUPERFAMILY	50370	Ricin B-like lectins	coord: 47..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017448.1	Sed0017448.1	mRNA