Sed0017347 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTGGAAAACATTTGCTGTCTCCAACCACACCATTTTCCCCCTCCTCCTCCCATTTTCTGTGTAAATCAAAATCCATAACAGAAATTCCCCCATTTATAAGACCCCATTTCATAGTCTCACCTTTCGCCGCCGTCCTCGATTTCTGTTCTCCGGCATCTGTTAGGGGTATTTTCTCTTCCGATTATGCAGCGGGTGAGCAAAAGCGTCCGGTTGGCGGAGGTAGCCGGCGGGACAACGGCGGAGTGCGCCGCCGTGTGCTGCTGCGGTCCTTGCATCGTGATCGAGTTCCTGGTGCTGGCCATTTACAAGGTGCCGGCGGGGCTGTGCCGGCGGGCGTGGAGGAGGAAGCGGCGGCGGCAGAGGATGAAGATGAAGATGAAGAAGAAAGGGCGGTGGTCTCCCGGGGAGTACGACGAGACGGATATTCAGATACTCTCCGCCGGAAGAAACCTGTACTCGTCGGAACGGAAAGCAGAAATGTCCGACGAGACGGAGAGGAAAGTGATGGAACTGGAAAAGGAGATGTGGGGGATTTTTTACAATACTGGATTCTGGAGAAGCCCTTCCCGGAGACAAGATCTAATTTCAAATTAACCCTTTTCCTTTTCCAAATCTATGGATTCATTCTCTCCACATTTTCCCGGAAAAGCAAAATTTCCGCCATTGTCTTCTTCGTTCTGTTCTGCTCTGTTCTGTTCTGTGTGTGTTTGAATTTGATTCGATCATCATTTGGAAACGGTGGCGTTTGTTTTTTGGGGGCCATATTTCATGGTGTTTGGCTTCCGGGATAATATTCTACTTTCTCCTTTCCTTTAATTATTACCTACGTTTACATAATTATAAAGATATTGCCATAAATTTCAAATAAAATAAAATAAAGATATTGCTATAACTTTATTCAATTTATAGGGAATTAATGTCATTCACAAC TTGGAAAACATTTGCTGTCTCCAACCACACCATTTTCCCCCTCCTCCTCCCATTTTCTGTGTAAATCAAAATCCATAACAGAAATTCCCCCATTTATAAGACCCCATTTCATAGTCTCACCTTTCGCCGCCGTCCTCGATTTCTGTTCTCCGGCATCTGTTAGGGGTATTTTCTCTTCCGATTATGCAGCGGGTGAGCAAAAGCGTCCGGTTGGCGGAGGTAGCCGGCGGGACAACGGCGGAGTGCGCCGCCGTGTGCTGCTGCGGTCCTTGCATCGTGATCGAGTTCCTGGTGCTGGCCATTTACAAGGTGCCGGCGGGGCTGTGCCGGCGGGCGTGGAGGAGGAAGCGGCGGCGGCAGAGGATGAAGATGAAGATGAAGAAGAAAGGGCGGTGGTCTCCCGGGGAGTACGACGAGACGGATATTCAGATACTCTCCGCCGGAAGAAACCTGTACTCGTCGGAACGGAAAGCAGAAATGTCCGACGAGACGGAGAGGAAAGTGATGGAACTGGAAAAGGAGATGTGGGGGATTTTTTACAATACTGGATTCTGGAGAAGCCCTTCCCGGAGACAAGATCTAATTTCAAATTAACCCTTTTCCTTTTCCAAATCTATGGATTCATTCTCTCCACATTTTCCCGGAAAAGCAAAATTTCCGCCATTGTCTTCTTCGTTCTGTTCTGCTCTGTTCTGTTCTGTGTGTGTTTGAATTTGATTCGATCATCATTTGGAAACGGTGGCGTTTGTTTTTTGGGGGCCATATTTCATGGTGTTTGGCTTCCGGGATAATATTCTACTTTCTCCTTTCCTTTAATTATTACCTACGTTTACATAATTATAAAGATATTGCCATAAATTTCAAATAAAATAAAATAAAGATATTGCTATAACTTTATTCAATTTATAGGGAATTAATGTCATTCACAAC ATGCAGCGGGTGAGCAAAAGCGTCCGGTTGGCGGAGGTAGCCGGCGGGACAACGGCGGAGTGCGCCGCCGTGTGCTGCTGCGGTCCTTGCATCGTGATCGAGTTCCTGGTGCTGGCCATTTACAAGGTGCCGGCGGGGCTGTGCCGGCGGGCGTGGAGGAGGAAGCGGCGGCGGCAGAGGATGAAGATGAAGATGAAGAAGAAAGGGCGGTGGTCTCCCGGGGAGTACGACGAGACGGATATTCAGATACTCTCCGCCGGAAGAAACCTGTACTCGTCGGAACGGAAAGCAGAAATGTCCGACGAGACGGAGAGGAAAGTGATGGAACTGGAAAAGGAGATGTGGGGGATTTTTTACAATACTGGATTCTGGAGAAGCCCTTCCCGGAGACAAGATCTAATTTCAAATTAA MQRVSKSVRLAEVAGGTTAECAAVCCCGPCIVIEFLVLAIYKVPAGLCRRAWRRKRRRQRMKMKMKKKGRWSPGEYDETDIQILSAGRNLYSSERKAEMSDETERKVMELEKEMWGIFYNTGFWRSPSRRQDLISN Homology
BLAST of Sed0017347 vs. NCBI nr
Match: KAA0043783.1 (uncharacterized protein E6C27_scaffold236G001150 [Cucumis melo var. makuwa] >TYK25350.1 uncharacterized protein E5676_scaffold352G004890 [Cucumis melo var. makuwa]) HSP 1 Score: 184.9 bits (468), Expect = 4.7e-43 Identity = 98/129 (75.97%), Postives = 110/129 (85.27%), Query Frame = 0
BLAST of Sed0017347 vs. NCBI nr
Match: XP_038905288.1 (uncharacterized protein LOC120091362 [Benincasa hispida]) HSP 1 Score: 180.6 bits (457), Expect = 8.8e-42 Identity = 96/135 (71.11%), Postives = 110/135 (81.48%), Query Frame = 0
BLAST of Sed0017347 vs. NCBI nr
Match: XP_011652052.1 (uncharacterized protein LOC105434984 [Cucumis sativus] >KGN59241.1 hypothetical protein Csa_001735 [Cucumis sativus]) HSP 1 Score: 179.5 bits (454), Expect = 2.0e-41 Identity = 97/129 (75.19%), Postives = 108/129 (83.72%), Query Frame = 0
BLAST of Sed0017347 vs. NCBI nr
Match: XP_016899649.1 (PREDICTED: uncharacterized protein LOC103486710 [Cucumis melo]) HSP 1 Score: 178.7 bits (452), Expect = 3.4e-41 Identity = 95/126 (75.40%), Postives = 104/126 (82.54%), Query Frame = 0
BLAST of Sed0017347 vs. NCBI nr
Match: XP_022955715.1 (uncharacterized protein LOC111457605 [Cucurbita moschata] >KAG6571296.1 hypothetical protein SDJN03_30211, partial [Cucurbita argyrosperma subsp. sororia] >KAG6596639.1 hypothetical protein SDJN03_09819, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028178.1 hypothetical protein SDJN02_09358, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 162.2 bits (409), Expect = 3.2e-36 Identity = 83/128 (64.84%), Postives = 98/128 (76.56%), Query Frame = 0
BLAST of Sed0017347 vs. ExPASy TrEMBL
Match: A0A5D3DQ13 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004890 PE=4 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 2.3e-43 Identity = 98/129 (75.97%), Postives = 110/129 (85.27%), Query Frame = 0
BLAST of Sed0017347 vs. ExPASy TrEMBL
Match: A0A0A0LGV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G784360 PE=4 SV=1) HSP 1 Score: 179.5 bits (454), Expect = 9.5e-42 Identity = 97/129 (75.19%), Postives = 108/129 (83.72%), Query Frame = 0
BLAST of Sed0017347 vs. ExPASy TrEMBL
Match: A0A1S4DUJ2 (uncharacterized protein LOC103486710 OS=Cucumis melo OX=3656 GN=LOC103486710 PE=4 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 1.6e-41 Identity = 95/126 (75.40%), Postives = 104/126 (82.54%), Query Frame = 0
BLAST of Sed0017347 vs. ExPASy TrEMBL
Match: A0A6J1GVU4 (uncharacterized protein LOC111457605 OS=Cucurbita moschata OX=3662 GN=LOC111457605 PE=4 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 1.6e-36 Identity = 83/128 (64.84%), Postives = 98/128 (76.56%), Query Frame = 0
BLAST of Sed0017347 vs. ExPASy TrEMBL
Match: A0A6J1J6H8 (uncharacterized protein LOC111481788 OS=Cucurbita maxima OX=3661 GN=LOC111481788 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 3.4e-31 Identity = 77/136 (56.62%), Postives = 96/136 (70.59%), Query Frame = 0
BLAST of Sed0017347 vs. TAIR 10
Match: AT3G11690.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06380.1); Has 84 Blast hits to 84 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 98.2 bits (243), Expect = 5.4e-21 Identity = 61/151 (40.40%), Postives = 82/151 (54.30%), Query Frame = 0
BLAST of Sed0017347 vs. TAIR 10
Match: AT5G06380.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 93.2 bits (230), Expect = 1.7e-19 Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 0
BLAST of Sed0017347 vs. TAIR 10
Match: AT2G27180.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11690.1); Has 99 Blast hits to 99 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 85.5 bits (210), Expect = 3.6e-17 Identity = 51/124 (41.13%), Postives = 70/124 (56.45%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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