Sed0017195 (gene) Chayote v1

Overview


Name	Sed0017195
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	LG10: 30944194 .. 30945344 (+)
RNA-Seq Expression	Sed0017195
Synteny	Sed0017195

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCACTCGTTCAAAACTTGGCACATTCCAACCAAAAGCTTGGCTCTCCTCTACTCCGCAATCTTCCAAACTTGTTGAACCGACATCTTACAAGAAGGCGTTGACTTGTCCTGAGTGGAAAGATGCAATGGATAGCGAATATCAAGCTCTTATCAACAACAACACGTGGTCATTGGTTCCCTTCCCTGCTGGTCATCGATCTGTTGGTTGTAAATGGGTGCATCGCCTCAAGATGCATCTGAATGGTTCAATTGACAAGCATAAGGCCCGTTTAGTTGCCAAAGGATTCACTCAAACATATGGGCTTGATTACTTTGATACTTTTAGTCCTGTTGCTAAGCCGACTACAGTTCGTCTCATTTTATCTTTGGCAGTCAACTTCAATTGGCCGATAAAGCAGCTTGATGTAAACAATGTTTTCCTGAATGAGGAATTAAACGAGGAGGTGTTCATGACTCAACCACCTGGCTACATTGACAAAGTCAACCCAAGGTATGTGTGCAAACTTAACAAGGAAATTTATGGGTTAAAACAGATTCCTCGCACGTGGTTTCTAAAATTGAGTTCGTGTTTGTTGAAATGAGGCTTTATATCTTGCCAGTCTGATTGTTCCATGTTCTGCTTAAAAAATGGTATTGTTATTGTCATTATTTTGGTTTATGTGGATGACATAACTGTTATCGGGAACGATGCAGATTTACTTTCATCTTTTGTGCATCGTTTAAGTCAGAAATTTAAATTAAAAGATTTGGGTCATTTATCTTATTTTCTTGGAATTCAAGCATCTCTTCTCTGCTGGTGGATTACATTTGTCTCAAGAAAAATATATTTTTGATGTGTTACGAAGAGCCAATATGCTGGACTCTAAACCTGTTTTGACATCAATGGCCTTTGGTACTTCATTATCTCTTAATGATGGTCCGTCGTTGAGAACCCGACTGAATATCATAGCATTGTTGGTGTTTTGCAATATTGCACTATCACTCGTCCTGATATTGCCTCTGTTGTGAACAAAGCATGTCAATTCCTTCACGCGCCAACGACTACTCATTGGCTTGCAGTCAAGCACATATTACGCTACTTAAAGGGGTCTATTTTTCATGGGTTGCGTTTAGCTCCGTCCTCAACATCCCTCATTTGTTATACTGA

mRNA sequence

ATGCTCACTCGTTCAAAACTTGGCACATTCCAACCAAAAGCTTGGCTCTCCTCTACTCCGCAATCTTCCAAACTTGTTGAACCGACATCTTACAAGAAGGCGTTGACTTGTCCTGAGTGGAAAGATGCAATGGATAGCGAATATCAAGCTCTTATCAACAACAACACGTGGTCATTGGTTCCCTTCCCTGCTGGTCATCGATCTGTTGGTTGTAAATGGGTGCATCGCCTCAAGATGCATCTGAATGGTTCAATTGACAAGCATAAGGCCCGTTTAGTTGCCAAAGGATTCACTCAAACATATGGGCTTGATTACTTTGATACTTTTAGTCCTGTTGCTAAGCCGACTACAGTTCGTCTCATTTTATCTTTGGCAGTCAACTTCAATTGGCCGATAAAGCAGCTTGATGTAAACAATGTTTTCCTGAATGAGGAATTAAACGAGGAGGTGTTCATGACTCAACCACCTGGCTACATTGACAAAGTCAACCCAAGCATGTCAATTCCTTCACGCGCCAACGACTACTCATTGGCTTGCAGTCAAGCACATATTACGCTACTTAAAGGGGTCTATTTTTCATGGGTTGCGTTTAGCTCCGTCCTCAACATCCCTCATTTGTTATACTGA

Coding sequence (CDS)

ATGCTCACTCGTTCAAAACTTGGCACATTCCAACCAAAAGCTTGGCTCTCCTCTACTCCGCAATCTTCCAAACTTGTTGAACCGACATCTTACAAGAAGGCGTTGACTTGTCCTGAGTGGAAAGATGCAATGGATAGCGAATATCAAGCTCTTATCAACAACAACACGTGGTCATTGGTTCCCTTCCCTGCTGGTCATCGATCTGTTGGTTGTAAATGGGTGCATCGCCTCAAGATGCATCTGAATGGTTCAATTGACAAGCATAAGGCCCGTTTAGTTGCCAAAGGATTCACTCAAACATATGGGCTTGATTACTTTGATACTTTTAGTCCTGTTGCTAAGCCGACTACAGTTCGTCTCATTTTATCTTTGGCAGTCAACTTCAATTGGCCGATAAAGCAGCTTGATGTAAACAATGTTTTCCTGAATGAGGAATTAAACGAGGAGGTGTTCATGACTCAACCACCTGGCTACATTGACAAAGTCAACCCAAGCATGTCAATTCCTTCACGCGCCAACGACTACTCATTGGCTTGCAGTCAAGCACATATTACGCTACTTAAAGGGGTCTATTTTTCATGGGTTGCGTTTAGCTCCGTCCTCAACATCCCTCATTTGTTATACTGA

Protein sequence

MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPSMSIPSRANDYSLACSQAHITLLKGVYFSWVAFSSVLNIPHLLY

Homology

[Close]

BLAST of Sed0017195 vs. NCBI nr
Match: CAN71553.1 (hypothetical protein VITISV_034738 [Vitis vinifera])

HSP 1 Score: 201.8 bits (512), Expect = 5.7e-48
Identity = 96/165 (58.18%), Postives = 124/165 (75.15%), Query Frame = 0


Query: 1   MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLV 60
           M+TRSK G  + K +L+S       +EP + K+AL  P WK AM+ EYQAL+ N TWSLV
Sbjct: 777 MITRSKSGICKKKTYLTSL-----TIEPRTVKQALQDPNWKVAMEQEYQALLKNQTWSLV 836

Query: 61  PFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRL 120
           P P+  + +GCKWV +LK   NGSID++KARLVA+GF QTYG+D+F+TFSPV KP T+RL
Sbjct: 837 PPPSNAKIIGCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCTIRL 896

Query: 121 ILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS 166
           +LS+AV+ NWPIKQLDV+N FLN +L E+VFM QPPG+ D   P+
Sbjct: 897 VLSIAVSSNWPIKQLDVHNAFLNGDLQEQVFMMQPPGFEDNSCPT 936

[Close]

BLAST of Sed0017195 vs. NCBI nr
Match: RVW78327.1 (7-deoxyloganetin glucosyltransferase [Vitis vinifera])

HSP 1 Score: 201.8 bits (512), Expect = 5.7e-48
Identity = 96/165 (58.18%), Postives = 124/165 (75.15%), Query Frame = 0


Query: 1   MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLV 60
           M+TRSK G  + K +L+S       +EP + K+AL  P WK AM+ EYQAL+ N TWSLV
Sbjct: 819 MITRSKSGICKKKTYLTSL-----TIEPRTVKQALQDPNWKVAMEQEYQALLKNQTWSLV 878

Query: 61  PFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRL 120
           P P+  + +GCKWV +LK   NGSID++KARLVA+GF QTYG+D+F+TFSPV KP T+RL
Sbjct: 879 PPPSNAKIIGCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCTIRL 938

Query: 121 ILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS 166
           +LS+AV+ NWPIKQLDV+N FLN +L E+VFM QPPG+ D   P+
Sbjct: 939 VLSIAVSSNWPIKQLDVHNAFLNGDLQEQVFMMQPPGFEDNSCPT 978

[Close]

BLAST of Sed0017195 vs. NCBI nr
Match: CAN75478.1 (hypothetical protein VITISV_020209 [Vitis vinifera])

HSP 1 Score: 196.8 bits (499), Expect = 1.8e-46
Identity = 94/165 (56.97%), Postives = 122/165 (73.94%), Query Frame = 0


Query: 1   MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLV 60
           M+TRSK G  + K +L+S       +EP + K+ L  P WK AM+ EYQAL+ N TWSLV
Sbjct: 523 MITRSKSGICKKKTYLTSL-----TIEPRTVKQTLQDPNWKLAMEQEYQALLKNQTWSLV 582

Query: 61  PFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRL 120
           P P+  + + CKWV +LK   NGSID++KARLVA+GF QTYG+D+F+TFSPV KP T+RL
Sbjct: 583 PPPSNAKIIRCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCTIRL 642

Query: 121 ILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS 166
           +LS+AV+ NWPIKQLDV+N FLN +L E+VFM QPPG+ D   P+
Sbjct: 643 VLSIAVSSNWPIKQLDVHNAFLNGDLQEQVFMMQPPGFEDSSCPT 682

[Close]

BLAST of Sed0017195 vs. NCBI nr
Match: XP_030501199.1 (ARF guanine-nucleotide exchange factor GNL2 [Cannabis sativa])

HSP 1 Score: 195.7 bits (496), Expect = 4.1e-46
Identity = 94/166 (56.63%), Postives = 116/166 (69.88%), Query Frame = 0


Query: 1   MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLV 60
           M+TR+K+GT+ PK  L S         P S   AL  P W  AMD+E  AL    TW LV
Sbjct: 329 MVTRAKVGTYTPKTLLVSQ-------TPLSLAAALKDPNWHGAMDNEMHALRTKGTWILV 388

Query: 61  PFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRL 120
           P P G R++GCKWVHR+K +  GS+DK+K++LVAKGF Q YG D+ +TFSPV KPTT+R 
Sbjct: 389 PLPPGKRAIGCKWVHRIKENSYGSVDKYKSQLVAKGFLQQYGFDFKETFSPVVKPTTIRT 448

Query: 121 ILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPSM 167
           IL++AV   W I+QLDVNN FLN +L EEVFMTQPPGY+DK +P M
Sbjct: 449 ILTIAVTKGWSIRQLDVNNAFLNGDLTEEVFMTQPPGYVDKEHPHM 487

[Close]

BLAST of Sed0017195 vs. NCBI nr
Match: PRQ54238.1 (putative RNA-directed DNA polymerase [Rosa chinensis])

HSP 1 Score: 194.9 bits (494), Expect = 6.9e-46
Identity = 94/168 (55.95%), Postives = 120/168 (71.43%), Query Frame = 0


Query: 1   MLTRSKLGTFQPKAW---LSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTW 60
           MLTRSK G  + KA+   LSS    S L EP S+K AL  P WK AM  EY ALIN NTW
Sbjct: 69  MLTRSKRGIVKKKAFLSVLSSICSDSTLSEPYSHKTALKVPAWKSAMQEEYDALINQNTW 128

Query: 61  SLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTT 120
           +LVP P     V CKW+ ++K + +GSI +HKARLVA+GF+Q YG+DY +T+SPV + TT
Sbjct: 129 TLVPLPPDKNLVSCKWIFKIKKNADGSIARHKARLVARGFSQEYGIDYDETYSPVVRHTT 188

Query: 121 VRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS 166
           VR+ILS+A ++ WP+ QLDV N FL+  LNEEV+MTQPPG+ D  +P+
Sbjct: 189 VRMILSIAASYGWPLHQLDVKNAFLHGVLNEEVYMTQPPGFEDSQHPT 236

[Close]

BLAST of Sed0017195 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.5e-39
Identity = 82/178 (46.07%), Postives = 115/178 (64.61%), Query Frame = 0


Query: 1    MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLV 60
            M TR+K G  +P    S     +   EP +  +AL    W++AM SE  A I N+TW LV
Sbjct: 929  MGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLV 988

Query: 61   PFPAGHRS-VGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVR 120
            P P  H + VGC+W+   K + +GS++++KARLVAKG+ Q  GLDY +TFSPV K T++R
Sbjct: 989  PPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIR 1048

Query: 121  LILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPSMSIPSRANDYSL 178
            ++L +AV+ +WPI+QLDVNN FL   L ++V+M+QPPG+IDK  P+     R   Y L
Sbjct: 1049 IVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGL 1106

[Close]

BLAST of Sed0017195 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.7e-37
Identity = 80/178 (44.94%), Postives = 112/178 (62.92%), Query Frame = 0


Query: 1    MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLV 60
            M TR+K G  +P    S     +   EP +  +A+    W+ AM SE  A I N+TW LV
Sbjct: 912  MATRAKDGIRKPNQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLV 971

Query: 61   PFPAGHRS-VGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVR 120
            P P    + VGC+W+   K + +GS++++KARLVAKG+ Q  GLDY +TFSPV K T++R
Sbjct: 972  PPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIR 1031

Query: 121  LILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPSMSIPSRANDYSL 178
            ++L +AV+ +WPI+QLDVNN FL   L +EV+M+QPPG++DK  P      R   Y L
Sbjct: 1032 IVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGL 1089

[Close]

BLAST of Sed0017195 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 6.3e-26
Identity = 60/135 (44.44%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 27  EPTSYKKALTCPEWKD---AMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNG 86
           EP S K+ L+ PE      AM  E ++L  N T+ LV  P G R + CKWV +LK   + 
Sbjct: 810 EPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDC 869

Query: 87  SIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLN 146
            + ++KARLV KGF Q  G+D+ + FSPV K T++R ILSLA + +  ++QLDV   FL+
Sbjct: 870 KLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLH 929

Query: 147 EELNEEVFMTQPPGY 159
            +L EE++M QP G+
Sbjct: 930 GDLEEEIYMEQPEGF 944

[Close]

BLAST of Sed0017195 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.0e-23
Identity = 63/141 (44.68%), Postives = 80/141 (56.74%), Query Frame = 0


Query: 1   MLTRSKLG--TFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWS 60
           MLTRSK G     PK  L+ T    K  EP S   AL  P W  AM  E  AL  N TW 
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKK--EPKSVIFALKDPGWCQAMQEELDALSRNKTWI 60

Query: 61  LVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTV 120
           LVP P     +GCKWV + K+H +G++D+ KARLVAKGF Q  G+ + +T+SPV +  T+
Sbjct: 61  LVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATI 120

Query: 121 RLILSLA------VNFNWPIK 134
           R IL++A       + NW  K
Sbjct: 121 RTILNVAQQLEVGQSINWMFK 139

[Close]

BLAST of Sed0017195 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 108.6 bits (270), Expect = 8.5e-23
Identity = 50/118 (42.37%), Postives = 76/118 (64.41%), Query Frame = 0


Query: 40   WKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQ 99
            W++A+++E  A   NNTW++   P     V  +WV  +K +  G+  ++KARLVA+GFTQ
Sbjct: 906  WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 100  TYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPG 158
             Y +DY +TF+PVA+ ++ R ILSL + +N  + Q+DV   FLN  L EE++M  P G
Sbjct: 966  KYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG 1023

[Close]

BLAST of Sed0017195 vs. ExPASy TrEMBL
Match: A5AQ04 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_034738 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.7e-48
Identity = 96/165 (58.18%), Postives = 124/165 (75.15%), Query Frame = 0


Query: 1   MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLV 60
           M+TRSK G  + K +L+S       +EP + K+AL  P WK AM+ EYQAL+ N TWSLV
Sbjct: 777 MITRSKSGICKKKTYLTSL-----TIEPRTVKQALQDPNWKVAMEQEYQALLKNQTWSLV 836

Query: 61  PFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRL 120
           P P+  + +GCKWV +LK   NGSID++KARLVA+GF QTYG+D+F+TFSPV KP T+RL
Sbjct: 837 PPPSNAKIIGCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCTIRL 896

Query: 121 ILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS 166
           +LS+AV+ NWPIKQLDV+N FLN +L E+VFM QPPG+ D   P+
Sbjct: 897 VLSIAVSSNWPIKQLDVHNAFLNGDLQEQVFMMQPPGFEDNSCPT 936

[Close]

BLAST of Sed0017195 vs. ExPASy TrEMBL
Match: A0A438H229 (7-deoxyloganetin glucosyltransferase OS=Vitis vinifera OX=29760 GN=UGT85A24_11 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 2.7e-48
Identity = 96/165 (58.18%), Postives = 124/165 (75.15%), Query Frame = 0


Query: 1   MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLV 60
           M+TRSK G  + K +L+S       +EP + K+AL  P WK AM+ EYQAL+ N TWSLV
Sbjct: 819 MITRSKSGICKKKTYLTSL-----TIEPRTVKQALQDPNWKVAMEQEYQALLKNQTWSLV 878

Query: 61  PFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRL 120
           P P+  + +GCKWV +LK   NGSID++KARLVA+GF QTYG+D+F+TFSPV KP T+RL
Sbjct: 879 PPPSNAKIIGCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCTIRL 938

Query: 121 ILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS 166
           +LS+AV+ NWPIKQLDV+N FLN +L E+VFM QPPG+ D   P+
Sbjct: 939 VLSIAVSSNWPIKQLDVHNAFLNGDLQEQVFMMQPPGFEDNSCPT 978

[Close]

BLAST of Sed0017195 vs. ExPASy TrEMBL
Match: A5CAE5 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_020209 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 8.8e-47
Identity = 94/165 (56.97%), Postives = 122/165 (73.94%), Query Frame = 0


Query: 1   MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLV 60
           M+TRSK G  + K +L+S       +EP + K+ L  P WK AM+ EYQAL+ N TWSLV
Sbjct: 523 MITRSKSGICKKKTYLTSL-----TIEPRTVKQTLQDPNWKLAMEQEYQALLKNQTWSLV 582

Query: 61  PFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRL 120
           P P+  + + CKWV +LK   NGSID++KARLVA+GF QTYG+D+F+TFSPV KP T+RL
Sbjct: 583 PPPSNAKIIRCKWVFKLKHKPNGSIDRYKARLVAQGFHQTYGIDFFETFSPVVKPCTIRL 642

Query: 121 ILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS 166
           +LS+AV+ NWPIKQLDV+N FLN +L E+VFM QPPG+ D   P+
Sbjct: 643 VLSIAVSSNWPIKQLDVHNAFLNGDLQEQVFMMQPPGFEDSSCPT 682

[Close]

BLAST of Sed0017195 vs. ExPASy TrEMBL
Match: A0A2P6S6E1 (Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0175291 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 3.3e-46
Identity = 94/168 (55.95%), Postives = 120/168 (71.43%), Query Frame = 0


Query: 1   MLTRSKLGTFQPKAW---LSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTW 60
           MLTRSK G  + KA+   LSS    S L EP S+K AL  P WK AM  EY ALIN NTW
Sbjct: 69  MLTRSKRGIVKKKAFLSVLSSICSDSTLSEPYSHKTALKVPAWKSAMQEEYDALINQNTW 128

Query: 61  SLVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTT 120
           +LVP P     V CKW+ ++K + +GSI +HKARLVA+GF+Q YG+DY +T+SPV + TT
Sbjct: 129 TLVPLPPDKNLVSCKWIFKIKKNADGSIARHKARLVARGFSQEYGIDYDETYSPVVRHTT 188

Query: 121 VRLILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS 166
           VR+ILS+A ++ WP+ QLDV N FL+  LNEEV+MTQPPG+ D  +P+
Sbjct: 189 VRMILSIAASYGWPLHQLDVKNAFLHGVLNEEVYMTQPPGFEDSQHPT 236

[Close]

BLAST of Sed0017195 vs. ExPASy TrEMBL
Match: A5BK17 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_024648 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 7.5e-46
Identity = 90/165 (54.55%), Postives = 120/165 (72.73%), Query Frame = 0


Query: 1    MLTRSKLGTFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLV 60
            M+TRSK G F+PKA+L ST        PTS  +AL    WK AM  EY AL+ NNTW LV
Sbjct: 863  MITRSKXGIFKPKAYLIST-------TPTSVPEALQLSHWKQAMTDEYLALLRNNTWDLV 922

Query: 61   PFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRL 120
            P P   + +GCKWV ++K + +G+I+K+KARLVAKGF Q  G D+ +TFSPV KPTT+R+
Sbjct: 923  PPPTDRKLIGCKWVFKVKENXDGTINKYKARLVAKGFHQIAGFDFNETFSPVVKPTTIRI 982

Query: 121  ILSLAVNFNWPIKQLDVNNVFLNEELNEEVFMTQPPGYIDKVNPS 166
            +L++A+N  W ++QLDVNN FLN +L+E++FM QP G+ID VNP+
Sbjct: 983  VLTIALNLQWKVRQLDVNNAFLNGDLHEDIFMHQPQGFIDPVNPN 1020

[Close]

BLAST of Sed0017195 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 143.7 bits (361), Expect = 1.7e-34
Identity = 62/144 (43.06%), Postives = 100/144 (69.44%), Query Frame = 0


Query: 23  SKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWSLVPFPAGHRSVGCKWVHRLKMHLN 82
           +K  EP++Y +A     W  AMD E  A+   +TW +   P   + +GCKWV+++K + +
Sbjct: 81  AKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 140

Query: 83  GSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTVRLILSLAVNFNWPIKQLDVNNVFL 142
           G+I+++KARLVAKG+TQ  G+D+ +TFSPV K T+V+LIL+++  +N+ + QLD++N FL
Sbjct: 141 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 200

Query: 143 NEELNEEVFMTQPPGYIDKVNPSM 167
           N +L+EE++M  PPGY  +   S+
Sbjct: 201 NGDLDEEIYMKLPPGYAARQGDSL 224

[Close]

BLAST of Sed0017195 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 109.4 bits (272), Expect = 3.6e-24
Identity = 63/141 (44.68%), Postives = 80/141 (56.74%), Query Frame = 0


Query: 1   MLTRSKLG--TFQPKAWLSSTPQSSKLVEPTSYKKALTCPEWKDAMDSEYQALINNNTWS 60
           MLTRSK G     PK  L+ T    K  EP S   AL  P W  AM  E  AL  N TW 
Sbjct: 1   MLTRSKAGINKLNPKYSLTITTTIKK--EPKSVIFALKDPGWCQAMQEELDALSRNKTWI 60

Query: 61  LVPFPAGHRSVGCKWVHRLKMHLNGSIDKHKARLVAKGFTQTYGLDYFDTFSPVAKPTTV 120
           LVP P     +GCKWV + K+H +G++D+ KARLVAKGF Q  G+ + +T+SPV +  T+
Sbjct: 61  LVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATI 120

Query: 121 RLILSLA------VNFNWPIK 134
           R IL++A       + NW  K
Sbjct: 121 RTILNVAQQLEVGQSINWMFK 139

The following BLAST results are available for this feature:

BLAST of Sed0017195 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN71553.1	5.7e-48	58.18	hypothetical protein VITISV_034738 [Vitis vinifera]	[more]
RVW78327.1	5.7e-48	58.18	7-deoxyloganetin glucosyltransferase [Vitis vinifera]	[more]
CAN75478.1	1.8e-46	56.97	hypothetical protein VITISV_020209 [Vitis vinifera]	[more]
XP_030501199.1	4.1e-46	56.63	ARF guanine-nucleotide exchange factor GNL2 [Cannabis sativa]	[more]
PRQ54238.1	6.9e-46	55.95	putative RNA-directed DNA polymerase [Rosa chinensis]	[more]

BLAST of Sed0017195 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	6.5e-39	46.07	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.7e-37	44.94	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	6.3e-26	44.44	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P92520	5.0e-23	44.68	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]
P04146	8.5e-23	42.37	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Sed0017195 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5AQ04	2.7e-48	58.18	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438H229	2.7e-48	58.18	7-deoxyloganetin glucosyltransferase OS=Vitis vinifera OX=29760 GN=UGT85A24_11 P...	[more]
A5CAE5	8.8e-47	56.97	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Vitis vinifera...	[more]
A0A2P6S6E1	3.3e-46	55.95	Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2...	[more]
A5BK17	7.5e-46	54.55	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]

BLAST of Sed0017195 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.7e-34	43.06	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	3.6e-24	44.68	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 54..161 e-value: 2.4E-33 score: 115.8
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 23..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0017195.1	Sed0017195.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0016779	nucleotidyltransferase activity