
Sed0017131 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTGGCCGCGGTTTTGATTTTCAGTTTCCCTCCACTACGCTCCCGCCTCTCCGATTCATTCTCCCATAAACCCTAACCCTTCACCGATCTTCTTCTCCAATCAGAACCATGAATCGCCGCCGTCAAATCTCCCCAAATTCATCTGCAAATCGGCCGGAATCGTTCCACAAGTACTTGAAGCCCGGCGCCTTAGCGCGGTTGCGAGACTCGCGAATCACCGCCAGATCGTTCCGATTCAACTCACTCTCTCAGAGCTACCTCCGCCGTGCTCCTCCCATGGAGTCGCCGGCAGTTTCCCCCGACGGTCAATCGGAGACTGACGTGGCTGACGTGGCCGGCGACTTTCCTTTGGCAGGGAGGATTTATGGTCCCCTGTGCCTTAAGAGGAAGAAGCTTGCGGCGATTAAGCCTTCGTGGTTTTCGATTTCTAATTTTCAGGCACCCACTGCAGATTTAACACCAGATCCGATTAGCGATGTTGCTGCGCATTGATTGTGGATTTATATACTACAGTGGATTGACATTTGATTTTGCTCTTGTTCAATGTAAGTAGATTTTCATGGCTGATTTGTTTCTTGTTGGTCGTTTCTTTCAATTGATTATAGGTTAAATTCTATTCATGCTGCTGATTTGAATAATTATAGTGGAAATTTAACACAGTGAACTTATCTGCATTTGATCGTTTTGATTATTTGAATCTGATTATTCAGCATTGGATCGTTTCGTTTAGGGGAAATGCCGTCGGGATTAATTTCATTTGAAAATGAAGTTGGTTCATTTAAAGTATGAAATATAGTCTGTTCATATTATAACTCATATGATGAGTATGTTTTTATTTGTATGTTACATTGTAGTTTTGGTTGATTCATTTATCATAATGAAGTTGC ATTGGCCGCGGTTTTGATTTTCAGTTTCCCTCCACTACGCTCCCGCCTCTCCGATTCATTCTCCCATAAACCCTAACCCTTCACCGATCTTCTTCTCCAATCAGAACCATGAATCGCCGCCGTCAAATCTCCCCAAATTCATCTGCAAATCGGCCGGAATCGTTCCACAAGTACTTGAAGCCCGGCGCCTTAGCGCGGTTGCGAGACTCGCGAATCACCGCCAGATCGTTCCGATTCAACTCACTCTCTCAGAGCTACCTCCGCCGTGCTCCTCCCATGGAGTCGCCGGCAGTTTCCCCCGACGGTCAATCGGAGACTGACGTGGCTGACGTGGCCGGCGACTTTCCTTTGGCAGGGAGGATTTATGGTCCCCTGTGCCTTAAGAGGAAGAAGCTTGCGGCGATTAAGCCTTCGTGGTTTTCGATTTCTAATTTTCAGGCACCCACTGCAGATTTAACACCAGATCCGATTAGCGATGTTGCTGCGCATTGATTGTGGATTTATATACTACAGTGGATTGACATTTGATTTTGCTCTTGTTCAATGTAAGTAGATTTTCATGGCTGATTTGTTTCTTGTTGGTCGTTTCTTTCAATTGATTATAGGTTAAATTCTATTCATGCTGCTGATTTGAATAATTATAGTGGAAATTTAACACAGTGAACTTATCTGCATTTGATCGTTTTGATTATTTGAATCTGATTATTCAGCATTGGATCGTTTCGTTTAGGGGAAATGCCGTCGGGATTAATTTCATTTGAAAATGAAGTTGGTTCATTTAAAGTATGAAATATAGTCTGTTCATATTATAACTCATATGATGAGTATGTTTTTATTTGTATGTTACATTGTAGTTTTGGTTGATTCATTTATCATAATGAAGTTGC ATGAATCGCCGCCGTCAAATCTCCCCAAATTCATCTGCAAATCGGCCGGAATCGTTCCACAAGTACTTGAAGCCCGGCGCCTTAGCGCGGTTGCGAGACTCGCGAATCACCGCCAGATCGTTCCGATTCAACTCACTCTCTCAGAGCTACCTCCGCCGTGCTCCTCCCATGGAGTCGCCGGCAGTTTCCCCCGACGGTCAATCGGAGACTGACGTGGCTGACGTGGCCGGCGACTTTCCTTTGGCAGGGAGGATTTATGGTCCCCTGTGCCTTAAGAGGAAGAAGCTTGCGGCGATTAAGCCTTCGTGGTTTTCGATTTCTAATTTTCAGGCACCCACTGCAGATTTAACACCAGATCCGATTAGCGATGTTGCTGCGCATTGA MNRRRQISPNSSANRPESFHKYLKPGALARLRDSRITARSFRFNSLSQSYLRRAPPMESPAVSPDGQSETDVADVAGDFPLAGRIYGPLCLKRKKLAAIKPSWFSISNFQAPTADLTPDPISDVAAH Homology
BLAST of Sed0017131 vs. NCBI nr
Match: XP_023513131.1 (uncharacterized protein LOC111777660 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 154.1 bits (388), Expect = 8.3e-34 Identity = 85/133 (63.91%), Postives = 95/133 (71.43%), Query Frame = 0
BLAST of Sed0017131 vs. NCBI nr
Match: XP_022986202.1 (uncharacterized protein LOC111484017 [Cucurbita maxima]) HSP 1 Score: 149.8 bits (377), Expect = 1.6e-32 Identity = 83/133 (62.41%), Postives = 96/133 (72.18%), Query Frame = 0
BLAST of Sed0017131 vs. NCBI nr
Match: XP_038902395.1 (uncharacterized protein LOC120089036 [Benincasa hispida]) HSP 1 Score: 148.7 bits (374), Expect = 3.5e-32 Identity = 81/133 (60.90%), Postives = 95/133 (71.43%), Query Frame = 0
BLAST of Sed0017131 vs. NCBI nr
Match: XP_022944248.1 (uncharacterized protein LOC111448755 [Cucurbita moschata] >KAG6570884.1 hypothetical protein SDJN03_29799, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010732.1 hypothetical protein SDJN02_27528, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 146.4 bits (368), Expect = 1.7e-31 Identity = 82/133 (61.65%), Postives = 93/133 (69.92%), Query Frame = 0
BLAST of Sed0017131 vs. NCBI nr
Match: XP_022989505.1 (uncharacterized protein LOC111486563 [Cucurbita maxima]) HSP 1 Score: 104.4 bits (259), Expect = 7.5e-19 Identity = 58/125 (46.40%), Postives = 77/125 (61.60%), Query Frame = 0
BLAST of Sed0017131 vs. ExPASy TrEMBL
Match: A0A6J1J6X7 (uncharacterized protein LOC111484017 OS=Cucurbita maxima OX=3661 GN=LOC111484017 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 7.5e-33 Identity = 83/133 (62.41%), Postives = 96/133 (72.18%), Query Frame = 0
BLAST of Sed0017131 vs. ExPASy TrEMBL
Match: A0A6J1FXV4 (uncharacterized protein LOC111448755 OS=Cucurbita moschata OX=3662 GN=LOC111448755 PE=4 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 8.3e-32 Identity = 82/133 (61.65%), Postives = 93/133 (69.92%), Query Frame = 0
BLAST of Sed0017131 vs. ExPASy TrEMBL
Match: A0A6J1JMJ5 (uncharacterized protein LOC111486563 OS=Cucurbita maxima OX=3661 GN=LOC111486563 PE=4 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 3.6e-19 Identity = 58/125 (46.40%), Postives = 77/125 (61.60%), Query Frame = 0
BLAST of Sed0017131 vs. ExPASy TrEMBL
Match: A0A6J1EXJ2 (uncharacterized protein LOC111437092 OS=Cucurbita moschata OX=3662 GN=LOC111437092 PE=4 SV=1) HSP 1 Score: 101.7 bits (252), Expect = 2.4e-18 Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 0
BLAST of Sed0017131 vs. ExPASy TrEMBL
Match: A0A5N6RCV3 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014400 PE=4 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 3.4e-17 Identity = 63/132 (47.73%), Postives = 78/132 (59.09%), Query Frame = 0
BLAST of Sed0017131 vs. TAIR 10
Match: AT5G54970.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 67.0 bits (162), Expect = 1.2e-11 Identity = 51/127 (40.16%), Postives = 66/127 (51.97%), Query Frame = 0
BLAST of Sed0017131 vs. TAIR 10
Match: AT4G26960.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G54970.1); Has 22 Blast hits to 22 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 48.5 bits (114), Expect = 4.6e-06 Identity = 32/103 (31.07%), Postives = 50/103 (48.54%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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