Sed0016890 (gene) Chayote v1

Overview


Name	Sed0016890
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Thioredoxin-like protein CITRX
Location	LG04: 439251 .. 442940 (-)
RNA-Seq Expression	Sed0016890
Synteny	Sed0016890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTTTTCAGTATAGAAATGAAAATTTGAAAACCCCGTCAAACCAAATGGATATACTGGCTAAGTAGCGAAAAGAACTTGGGAGCGTAATTTCGAGGCAAGGAGTAACAAACCATATCCATAGCGTAAGCTCTTTCCCTCGTTCGTCAATGGCTCTTTTACAATCCCCAAAACCCCTTCAAATCGCCTCAAATTTCTTCCCCGTCTGTAATTTCAGCGCCATTCGACCTTCCATTTCAATTCCCTTCTCATCCTCCAAAACCCATCAACAAAATCCACTTCTTTCATCACTTTCAGCCACTCCGAGAAGGGTTCTGTGCAAACCCCCTAAGGGAAAGTACATCCAAGACGATTATCTTGTGGTAATCTTTCGTTTTCTTCAACTCCTTTGCTTATTTCCTTTGATTTTGTTTGTGGGTTTGTTGCCATTTGCTTGTTTCTTTTGGCTATTGGTTCGGCTTATCATTTTTGCTTGTTGATTGTTGAAGTTTTTCTTTGATTTTGTTTGTGGGTTTGTTGCCGTTTTGGTTCGGCTAATTATTTTTGCTTGTTGATTGTTGAAGTTTTGAGGTGTTAGTTTTGGTGTTTGGGTTTGCAGAAGAAGATGACGGCTGAGGAAGTGCAGGAGCTGGTGAAGGGGGAGAGAACAGTGCCGCTTATTATCGATTTCTATGCAACATGGTGTGGACCCTGTATTCTAATGGCTCAAGAACTTGAAATGGTATGTCTAATTACATGCCATTTTGGTATGAACTTACATTTGGATAGTGTTTCTTTTGCCAGAGAGGTTACTGACTAAATGCTTCATTTTCATGTATTGGCCAATTAGCTTAAGCTTTTAGACTTAGTGGTAATAAGATTTTACAATTGAGCTCACTTTGGGTTTCAAATTTGGGATTCTCTAAAGAGAGACTCCAAGCCTCGACCAACAAGGCTATCCCTCGGAGACAGTTGAGCTTCCATATTATTTTGGTGAAGAAAAAAACATGCCTGAATGTTTGAGACGAAAGAGGCATTGGTTGAGAACTTGAAGTTGTATTTTTTGTATATATGAAGAAAAAACATGCCTCGAGTTTGGTTTTGGGAAAGTTGAGTGGAAGTGGAAGAGGAAGAATCATTTTTTTTTTCACTGGGGTTGGACCATGTCTCCCGAACAATCTTTTGAGTGGTTTGAATAAGTTTGTTTGAAGGAGAGATGGCAGAAAAATCTTATTGGAATAAAGTTATTTGTAGGAGATGTTGGAGAAAAACCTTGTTTAGATCAGATTGTTTGGAGGAGTTGTAGGAAAAAAAGTTGTTTTGAGGAGGGGTTGTAGAACTTTGTTTAGAGTAGTGGTTGGCATGTGGGGTTGTGGGTAGTTTTTTCTACCCTAAACAAATATGGGTAATTTTACCATCTTTTCCTTATTCATCCACGTTCATAGTTCGGCTGGTGGTAGGATCCCTATGATTTGGGCTATTCATTTACTTGGTTATGTAATAAGGTGGCTGATTTGTTAGGGTGATGTCTAGCATTTGCAAAGCAATTAGTTTCTGACTGCAGGGAGGAAACAATATGTGTAGCTAGTTAGTACATTCTTTCTCCTTGCAAGTTGCATCCAATCGATGTATCTCATATTGGCAATTGTATCTTTTGTTAGTATATTTGTTTTGTTCCTATTCTGCTGTCTCACAGTTTGTGTAGATGGGAAATTCCTAGTCCATATGATTCCTTGTTGTTGAACATCCTTCCTGCTAGTGCCCAATCATAGGTGGAAATTTAGTTTTCCTTTTAGCATAATTGATTATCAAGCTTGTTGGTTGGAGAATCAAGTCATTGTTAGTAGAGATTGTCAAGCCAATATTTATGTGCTCGTAATCGCATAGAAGGATTGCCTTGATGTGTGTGTGTGTTCTCTTCGTGGACAAAGAAATTGTTAGTAGACACAAGAACCACCAATCATAAGCAAGCTTCAAGTTTCAAAGGTCACTAATGCATCTTAGTTGGATTGCAACATACTGGATTGGTGATAAGATTATAGTTCTTAACTTATTCAAAGAAGTTGGATTTGTGTGGATAAATCTTTTGCATCTTTTTGTTTATTTATTTATTTGGTCAACTGGAAAAAGTTGTGGTTCTTCAAGTGAACTTCTTGATGGATTACATCAGAATACAAATAATTCAACCTGAACTGAGGCATAATGCAGCAGTTGCTAGAATTGGAAACGTTTGTACTTAGAGTGATTGTTCAATATGTTTTCTTACATTTTTTGCTCCATTTAAAGAAACACTGCAAATCTCTAGGTGGTCTGGAAACGTTTTGATAATATTTTAGATGTCACCTTCGGGATGTTTTGCTCTTTCAAGATCGCAATTACAACCCTTCCAGTTTTAGTTCAGGTCGTTGATGTTATTTTCCTACTATTTGTGAGTGTCAGGGCCAGCTTACTTGCACCTCATCTATTATCACACAACAGATCGTCTGGCCCTATGATATTTCACTGTCAAGGAAATATATAGAAAATTAATTACTAGGTAGGTGACCACCATGGATTAAATCGATCACCTCTTAAATCTTCAATGCTCTCTTTGACCACTAGGTCAACCTATGATCGTTAGATGGTTGATGTTTCCTGGTGGTATTATTCTTCACATTGTTGAGTTCGAGATTTTACTGTTTTTTACATCCATGATGGGTTTTGTAATAGTCTATTCAGTCCCTGCATCAGCTGACATGGCATTCCAAATTGATTTGCCTCATGAATTTGTTAATAATTGAAGACCTGTAAAAGAATTTGTTTGGTTAAAGTGTAGATGCTTGAGACGACTGCTCAATGTTCATGGCACTATTTGTTGACTATGTACATAGATTAACATTTGGAGTTGTTGGATGAAGCTGTAACTAAAACATATTTTCACGACTTTCATTTTGAAAATCATGGAGACAATAGCTAACTTGTTGCTCTAATCACAGCTTGCTGTCGAGTACGAGAATAACGCAATGATCATCAAGGTTGATACAGATGATGAATATGAATTTTCAAACGATATGCAGGTAAAAACAGTAAAAACACACCACTCCTTTCTCCCTAACATATTTGCTTGGTCTCTATACTGCAAAATTTGTCCCATCACAAAGCATTCTCATCTACATGCTCAACTAACTTATCTCGGTTATCGACGAAGTCGGTTGTGAAAGATATCACCTTTCTTACCTACATTCCTAGCAAGGTAAAACTAAGTTAAATGTTTTTGTTTCAGGTGAGAGGACTGCCTACACTTTTCTTCATTAGCCCGGATCCAAATAAAGAAGCTATCCGCACCGAAGGTCTCATACCAATTCAGATGATGCGAGATATCATTGATAAAGAGATGTGAACTGGAAGAAAGGAGCATCAGGCACACCTCTCTTCAACACATGCAAATAGGGGGCTCGAAATCCATATTCGACCATGTTCTTTCAAGCCTTCCATAGAGTTTATCAGCCTCCCATAAGTCTCATTTTAACCAATTTGATAGGGACATGGAGATTTGAATAGCAGAAAATCATGATAGTAGGGTAGAAACTCTTCTAGTATTAGTATGCTCTCACCATTTTATGATGAAAACAGAACTATCTATTCTCTATAGGAAGGATTATCTTGTAGCAACTGTCCAACTAACAAAGTTTTAGTTGGTTTAAAATTTTTAATCAAGGGTTCAAAATTTTCC

mRNA sequence

TGTTTTTCAGTATAGAAATGAAAATTTGAAAACCCCGTCAAACCAAATGGATATACTGGCTAAGTAGCGAAAAGAACTTGGGAGCGTAATTTCGAGGCAAGGAGTAACAAACCATATCCATAGCGTAAGCTCTTTCCCTCGTTCGTCAATGGCTCTTTTACAATCCCCAAAACCCCTTCAAATCGCCTCAAATTTCTTCCCCGTCTGTAATTTCAGCGCCATTCGACCTTCCATTTCAATTCCCTTCTCATCCTCCAAAACCCATCAACAAAATCCACTTCTTTCATCACTTTCAGCCACTCCGAGAAGGGTTCTGTGCAAACCCCCTAAGGGAAAGTACATCCAAGACGATTATCTTGTGAAGAAGATGACGGCTGAGGAAGTGCAGGAGCTGGTGAAGGGGGAGAGAACAGTGCCGCTTATTATCGATTTCTATGCAACATGGTGTGGACCCTGTATTCTAATGGCTCAAGAACTTGAAATGCTTGCTGTCGAGTACGAGAATAACGCAATGATCATCAAGGTTGATACAGATGATGAATATGAATTTTCAAACGATATGCAGGTGAGAGGACTGCCTACACTTTTCTTCATTAGCCCGGATCCAAATAAAGAAGCTATCCGCACCGAAGGTCTCATACCAATTCAGATGATGCGAGATATCATTGATAAAGAGATGTGAACTGGAAGAAAGGAGCATCAGGCACACCTCTCTTCAACACATGCAAATAGGGGGCTCGAAATCCATATTCGACCATGTTCTTTCAAGCCTTCCATAGAGTTTATCAGCCTCCCATAAGTCTCATTTTAACCAATTTGATAGGGACATGGAGATTTGAATAGCAGAAAATCATGATAGTAGGGTAGAAACTCTTCTAGTATTAGTATGCTCTCACCATTTTATGATGAAAACAGAACTATCTATTCTCTATAGGAAGGATTATCTTGTAGCAACTGTCCAACTAACAAAGTTTTAGTTGGTTTAAAATTTTTAATCAAGGGTTCAAAATTTTCC

Coding sequence (CDS)

ATGGCTCTTTTACAATCCCCAAAACCCCTTCAAATCGCCTCAAATTTCTTCCCCGTCTGTAATTTCAGCGCCATTCGACCTTCCATTTCAATTCCCTTCTCATCCTCCAAAACCCATCAACAAAATCCACTTCTTTCATCACTTTCAGCCACTCCGAGAAGGGTTCTGTGCAAACCCCCTAAGGGAAAGTACATCCAAGACGATTATCTTGTGAAGAAGATGACGGCTGAGGAAGTGCAGGAGCTGGTGAAGGGGGAGAGAACAGTGCCGCTTATTATCGATTTCTATGCAACATGGTGTGGACCCTGTATTCTAATGGCTCAAGAACTTGAAATGCTTGCTGTCGAGTACGAGAATAACGCAATGATCATCAAGGTTGATACAGATGATGAATATGAATTTTCAAACGATATGCAGGTGAGAGGACTGCCTACACTTTTCTTCATTAGCCCGGATCCAAATAAAGAAGCTATCCGCACCGAAGGTCTCATACCAATTCAGATGATGCGAGATATCATTGATAAAGAGATGTGA

Protein sequence

MALLQSPKPLQIASNFFPVCNFSAIRPSISIPFSSSKTHQQNPLLSSLSATPRRVLCKPPKGKYIQDDYLVKKMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIIKVDTDDEYEFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM

Homology

[Close]

BLAST of Sed0016890 vs. NCBI nr
Match: KAA0064789.1 (thioredoxin-like protein CITRX [Cucumis melo var. makuwa])

HSP 1 Score: 317.4 bits (812), Expect = 7.9e-83
Identity = 158/183 (86.34%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MALLQSPKPLQIASNFFPVCNFSAIRPSISIPFSSSKTHQQNPLLS------SLSATPRR 60
           MA+LQ  K LQI+SN FP+CNF++IRPSISIPFSSSKTH Q+PLLS      SLS TPRR
Sbjct: 1   MAVLQPQKTLQISSNLFPICNFTSIRPSISIPFSSSKTHHQSPLLSSSSRPFSLSTTPRR 60

Query: 61  VLCKPPKGKYIQDDYLVKKMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEMLA 120
           +LC+PPKGKYI DDYLVKKMTA EVQELVKGER VPLIIDFYATWCGPCILMAQELEMLA
Sbjct: 61  ILCEPPKGKYIHDDYLVKKMTAAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMLA 120

Query: 121 VEYENNAMIIKVDTDDEYEFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID 178
           VEYENNAMIIKVDTDDEYEFS DMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID
Sbjct: 121 VEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID 180

[Close]

BLAST of Sed0016890 vs. NCBI nr
Match: XP_004146769.1 (thioredoxin-like protein CITRX, chloroplastic [Cucumis sativus] >KGN47767.1 hypothetical protein Csa_003304 [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 1.0e-82
Identity = 157/183 (85.79%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MALLQSPKPLQIASNFFPVCNFSAIRPSISIPFSSSKTHQQNPLLS------SLSATPRR 60
           MA+LQ  K LQ+ SN FP+CNF++IRPSISIPFSSSKTH Q+PLLS      SLS TPRR
Sbjct: 1   MAVLQPQKTLQVTSNLFPICNFTSIRPSISIPFSSSKTHHQSPLLSSSSRPFSLSPTPRR 60

Query: 61  VLCKPPKGKYIQDDYLVKKMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEMLA 120
           +LC+PPKGKYI DDYLVKKMTA EVQELVKGER VPLIIDFYATWCGPCILMAQELEMLA
Sbjct: 61  ILCEPPKGKYIHDDYLVKKMTAAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMLA 120

Query: 121 VEYENNAMIIKVDTDDEYEFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID 178
           VEYENNAMIIKVDTDDEYEFS DMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID
Sbjct: 121 VEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID 180

[Close]

BLAST of Sed0016890 vs. NCBI nr
Match: XP_038884365.1 (thioredoxin-like protein CITRX, chloroplastic [Benincasa hispida])

HSP 1 Score: 317.0 bits (811), Expect = 1.0e-82
Identity = 159/184 (86.41%), Postives = 164/184 (89.13%), Query Frame = 0


Query: 1   MALLQSPKPLQIASNFFPVCNFSAIRPSISIPFSSSKTHQQNPLLS-------SLSATPR 60
           MALLQ  K LQI SN FP+CNFS+IRPSISIPFS+SKTH QN LLS       SLS TPR
Sbjct: 1   MALLQPQKTLQITSNLFPICNFSSIRPSISIPFSASKTHHQNALLSSSSSRPFSLSTTPR 60

Query: 61  RVLCKPPKGKYIQDDYLVKKMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEML 120
           R LC+PPKGKYI DDYLVKKMTA EVQELVKGER VPLIIDFYATWCGPCILMAQELEML
Sbjct: 61  RTLCEPPKGKYIHDDYLVKKMTAAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEML 120

Query: 121 AVEYENNAMIIKVDTDDEYEFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDII 178
           AVEYENNAMI+KVDTDDEYEFS DMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDII
Sbjct: 121 AVEYENNAMIVKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDII 180

[Close]

BLAST of Sed0016890 vs. NCBI nr
Match: XP_023538068.1 (thioredoxin-like protein CITRX, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 315.8 bits (808), Expect = 2.3e-82
Identity = 160/178 (89.89%), Postives = 165/178 (92.70%), Query Frame = 0


Query: 1   MALLQSPKPLQIASNFFPVCNFSAIRPSISIPF-SSSKTHQQNPLLSSLSATPRRVLCKP 60
           MALLQ PK LQI +N FP+ NFS+IRPSISIPF SSSKTHQQN LLSS S TPRR+LCKP
Sbjct: 1   MALLQPPKTLQITANLFPISNFSSIRPSISIPFSSSSKTHQQNALLSS-STTPRRILCKP 60

Query: 61  PKGKYIQDDYLVKKMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEMLAVEYEN 120
           PKGKYI DDYLVKKMTAEEVQELVKG+R VPLIIDFYATWCGPCILMAQELEMLAVEYEN
Sbjct: 61  PKGKYIHDDYLVKKMTAEEVQELVKGKRNVPLIIDFYATWCGPCILMAQELEMLAVEYEN 120

Query: 121 NAMIIKVDTDDEYEFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 178
           NAMIIKVDTDDEYEFS DMQVRGLPTLFFISPDP KEAIRTEGLIPIQMMRDIIDKEM
Sbjct: 121 NAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPKKEAIRTEGLIPIQMMRDIIDKEM 177

[Close]

BLAST of Sed0016890 vs. NCBI nr
Match: XP_022131323.1 (thioredoxin-like protein CITRX, chloroplastic [Momordica charantia])

HSP 1 Score: 314.7 bits (805), Expect = 5.1e-82
Identity = 158/183 (86.34%), Postives = 164/183 (89.62%), Query Frame = 0


Query: 1   MALLQSPKPLQIASNFFPVCNFSAIRPSISIPFSSSKTHQQNPLLS------SLSATPRR 60
           MALLQ  K LQI ++ FP+CNFSA RPSISIPFSSSKTHQQNPL S      SLS TPR+
Sbjct: 1   MALLQPHKTLQITNSLFPICNFSATRPSISIPFSSSKTHQQNPLFSSTITPFSLSTTPRK 60

Query: 61  VLCKPPKGKYIQDDYLVKKMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEMLA 120
            LC+PPKGKYI DDYLVKKMTA EVQELVKGER VPLIIDFYATWCGPCILMAQELEMLA
Sbjct: 61  FLCQPPKGKYIHDDYLVKKMTAAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMLA 120

Query: 121 VEYENNAMIIKVDTDDEYEFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID 178
           VEYENNAMIIKVDTDDEYEFS DMQVRGLPTLFFISPDP+KEAIRTEGLIPIQMMRDIID
Sbjct: 121 VEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPSKEAIRTEGLIPIQMMRDIID 180

[Close]

BLAST of Sed0016890 vs. ExPASy Swiss-Prot
Match: Q9M7X9 (Thioredoxin-like protein CITRX, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CITRX PE=1 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.7e-59
Identity = 111/153 (72.55%), Postives = 133/153 (86.93%), Query Frame = 0


Query: 25  IRPSISIPFSSSKTHQQNPLLSSLSATPRRVLCKPPKGKYIQDDYLVKKMTAEEVQELVK 84
           IRP ++ PFSSS       L  S    PR++LC PP+GK++++DYLVKK++A+E+QELVK
Sbjct: 35  IRP-VAAPFSSSTA---GNLPFSPLTRPRKLLCPPPRGKFVREDYLVKKLSAQELQELVK 94

Query: 85  GERTVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIIKVDTDDEYEFSNDMQVRGLP 144
           G+R VPLI+DFYATWCGPCILMAQELEMLAVEYE+NA+I+KVDTDDEYEF+ DMQVRGLP
Sbjct: 95  GDRKVPLIVDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDDEYEFARDMQVRGLP 154

Query: 145 TLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 178
           TLFFISPDP+K+AIRTEGLIP+QMM DIID EM
Sbjct: 155 TLFFISPDPSKDAIRTEGLIPLQMMHDIIDNEM 183

[Close]

BLAST of Sed0016890 vs. ExPASy Swiss-Prot
Match: Q9LKW0 (Thioredoxin-like protein CITRX, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CITRX PE=1 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.0e-56
Identity = 114/165 (69.09%), Postives = 133/165 (80.61%), Query Frame = 0


Query: 24  AIRPSISIPFSSSKTHQQN-------PLLSSLSAT---PRRVLCKPPK-GKYIQDDYLVK 83
           A+R S S   SS   H  N       P  S+LS T    R  +CKPP  GKY+++DYLVK
Sbjct: 12  ALRTSPSY-LSSKLPHHLNYSLFKHAPSTSTLSLTQVLSRNTICKPPAVGKYVREDYLVK 71

Query: 84  KMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIIKVDTDDEY 143
           K++A+E+QEL+KGER VPLIIDFYATWCGPCILMAQELEMLAVEYENNA+I+KVDTDDEY
Sbjct: 72  KLSAKEIQELIKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYENNALIVKVDTDDEY 131

Query: 144 EFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 178
           EF+ DMQVRGLPTL+FISPD +K+AIRTEGLIPIQMMRDIID ++
Sbjct: 132 EFARDMQVRGLPTLYFISPDSSKDAIRTEGLIPIQMMRDIIDNDL 175

[Close]

BLAST of Sed0016890 vs. ExPASy Swiss-Prot
Match: Q6JE37 (Thioredoxin-like protein CITRX2, chloroplastic OS=Nicotiana benthamiana OX=4100 GN=CITRX2 PE=1 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 5.0e-56
Identity = 111/175 (63.43%), Postives = 142/175 (81.14%), Query Frame = 0


Query: 6   SPKPLQIASNFFPVCNFSAIRPSISIPFSSSKTHQQNPLLSSLSATPRRVLCKPP---KG 65
           S  PLQ ++  F     + ++ S+   FS +    +  LLS+ + + R+ +CKPP    G
Sbjct: 11  SAPPLQTSAFHFSSKQPNQLKYSL---FSYTCPILKRSLLSTQTLS-RKSICKPPDVATG 70

Query: 66  KYIQDDYLVKKMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEMLAVEYENNAM 125
           KY+++DYLVKK++A+++QEL+KGER VPLIIDFYATWCGPCILMAQELEMLAVEYE+NA+
Sbjct: 71  KYVREDYLVKKVSAKDIQELIKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYESNAL 130

Query: 126 IIKVDTDDEYEFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 178
           I+KVDTDDEYEF+ DMQVRGLPTL+FISPDPNK+AIRTEGLIPIQMMRDII+ ++
Sbjct: 131 IVKVDTDDEYEFARDMQVRGLPTLYFISPDPNKDAIRTEGLIPIQMMRDIINNDL 181

[Close]

BLAST of Sed0016890 vs. ExPASy Swiss-Prot
Match: Q6JE38 (Thioredoxin-like protein CITRX1, chloroplastic OS=Nicotiana benthamiana OX=4100 GN=CITRX1 PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.1e-55
Identity = 109/164 (66.46%), Postives = 139/164 (84.76%), Query Frame = 0


Query: 20  CNFSAIRPS---ISIPFSSSKTHQQNPLLSSLSATPRRVLCKPP---KGKYIQDDYLVKK 79
           C+FS+ +P+    S+ FS +    +  LLS+ + + R+ +CKPP    GKY+++DYLVKK
Sbjct: 20  CHFSSKQPNQLKYSL-FSYTCPILKRSLLSTQTLS-RKSICKPPAVATGKYVREDYLVKK 79

Query: 80  MTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIIKVDTDDEYE 139
           ++A+++QEL+KGER VPLIIDFYATWCGPCILMAQELEMLAVEYE+NA+I+KVD DDEYE
Sbjct: 80  VSAKDIQELIKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYESNALIVKVDADDEYE 139

Query: 140 FSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 178
           F+ DMQVRGLPTL+FISPDPNK+AIRTEGLIPIQMMRDII+ ++
Sbjct: 140 FARDMQVRGLPTLYFISPDPNKDAIRTEGLIPIQMMRDIINNDL 181

[Close]

BLAST of Sed0016890 vs. ExPASy Swiss-Prot
Match: M1A3D5 (Thioredoxin-like protein CITRX, chloroplastic OS=Solanum tuberosum OX=4113 GN=CITRX PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 5.5e-55
Identity = 108/156 (69.23%), Postives = 129/156 (82.69%), Query Frame = 0


Query: 33  FSSSKTHQQN-------PLLSSLSAT---PRRVLCKP-PKGKYIQDDYLVKKMTAEEVQE 92
           FSS   H  N       P  S+LS T    R+ +C+P   GKY+++DYLVKK++A+E+QE
Sbjct: 20  FSSKLPHHLNYSLFSHTPPTSTLSLTQTLSRKSICQPRAVGKYVREDYLVKKLSAKEIQE 79

Query: 93  LVKGERTVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIIKVDTDDEYEFSNDMQVR 152
           L+KGER VPLIIDFYATWCGPCILMAQELEMLAVEYENNA+I+KVDTDDEYEF+ DMQVR
Sbjct: 80  LIKGERNVPLIIDFYATWCGPCILMAQELEMLAVEYENNALIVKVDTDDEYEFARDMQVR 139

Query: 153 GLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 178
           GLPTL+FISPD +K+AIRTEGLIPIQMMRDII+ ++
Sbjct: 140 GLPTLYFISPDSSKDAIRTEGLIPIQMMRDIINNDL 175

[Close]

BLAST of Sed0016890 vs. ExPASy TrEMBL
Match: A0A5A7VH45 (Thioredoxin-like protein CITRX OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00960 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 3.8e-83
Identity = 158/183 (86.34%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MALLQSPKPLQIASNFFPVCNFSAIRPSISIPFSSSKTHQQNPLLS------SLSATPRR 60
           MA+LQ  K LQI+SN FP+CNF++IRPSISIPFSSSKTH Q+PLLS      SLS TPRR
Sbjct: 1   MAVLQPQKTLQISSNLFPICNFTSIRPSISIPFSSSKTHHQSPLLSSSSRPFSLSTTPRR 60

Query: 61  VLCKPPKGKYIQDDYLVKKMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEMLA 120
           +LC+PPKGKYI DDYLVKKMTA EVQELVKGER VPLIIDFYATWCGPCILMAQELEMLA
Sbjct: 61  ILCEPPKGKYIHDDYLVKKMTAAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMLA 120

Query: 121 VEYENNAMIIKVDTDDEYEFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID 178
           VEYENNAMIIKVDTDDEYEFS DMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID
Sbjct: 121 VEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID 180

[Close]

BLAST of Sed0016890 vs. ExPASy TrEMBL
Match: A0A0A0KH97 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401380 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 5.0e-83
Identity = 157/183 (85.79%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MALLQSPKPLQIASNFFPVCNFSAIRPSISIPFSSSKTHQQNPLLS------SLSATPRR 60
           MA+LQ  K LQ+ SN FP+CNF++IRPSISIPFSSSKTH Q+PLLS      SLS TPRR
Sbjct: 1   MAVLQPQKTLQVTSNLFPICNFTSIRPSISIPFSSSKTHHQSPLLSSSSRPFSLSPTPRR 60

Query: 61  VLCKPPKGKYIQDDYLVKKMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEMLA 120
           +LC+PPKGKYI DDYLVKKMTA EVQELVKGER VPLIIDFYATWCGPCILMAQELEMLA
Sbjct: 61  ILCEPPKGKYIHDDYLVKKMTAAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMLA 120

Query: 121 VEYENNAMIIKVDTDDEYEFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID 178
           VEYENNAMIIKVDTDDEYEFS DMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID
Sbjct: 121 VEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID 180

[Close]

BLAST of Sed0016890 vs. ExPASy TrEMBL
Match: A0A6J1BT12 (thioredoxin-like protein CITRX, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111004581 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.5e-82
Identity = 158/183 (86.34%), Postives = 164/183 (89.62%), Query Frame = 0


Query: 1   MALLQSPKPLQIASNFFPVCNFSAIRPSISIPFSSSKTHQQNPLLS------SLSATPRR 60
           MALLQ  K LQI ++ FP+CNFSA RPSISIPFSSSKTHQQNPL S      SLS TPR+
Sbjct: 1   MALLQPHKTLQITNSLFPICNFSATRPSISIPFSSSKTHQQNPLFSSTITPFSLSTTPRK 60

Query: 61  VLCKPPKGKYIQDDYLVKKMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEMLA 120
            LC+PPKGKYI DDYLVKKMTA EVQELVKGER VPLIIDFYATWCGPCILMAQELEMLA
Sbjct: 61  FLCQPPKGKYIHDDYLVKKMTAAEVQELVKGERNVPLIIDFYATWCGPCILMAQELEMLA 120

Query: 121 VEYENNAMIIKVDTDDEYEFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIID 178
           VEYENNAMIIKVDTDDEYEFS DMQVRGLPTLFFISPDP+KEAIRTEGLIPIQMMRDIID
Sbjct: 121 VEYENNAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPSKEAIRTEGLIPIQMMRDIID 180

[Close]

BLAST of Sed0016890 vs. ExPASy TrEMBL
Match: A0A6J1GHF9 (thioredoxin-like protein CITRX, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454226 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.2e-82
Identity = 158/178 (88.76%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 1   MALLQSPKPLQIASNFFPVCNFSAIRPSISIPF-SSSKTHQQNPLLSSLSATPRRVLCKP 60
           MALLQ PK LQI +N FP+ NFS+IRPSISIPF SSSKT QQN LLSS + TPRR+LCKP
Sbjct: 1   MALLQPPKTLQITANLFPISNFSSIRPSISIPFSSSSKTLQQNALLSSSTTTPRRILCKP 60

Query: 61  PKGKYIQDDYLVKKMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEMLAVEYEN 120
           PKGKYI DDYLVKKMTAEEVQELVKG+R VPLIIDFYATWCGPCILMAQELEMLAVEYEN
Sbjct: 61  PKGKYIHDDYLVKKMTAEEVQELVKGKRNVPLIIDFYATWCGPCILMAQELEMLAVEYEN 120

Query: 121 NAMIIKVDTDDEYEFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 178
           NAMIIKVDTDDEYEFS DMQVRGLPTLFFISPDP KEAIRTEGLIPIQMMRDIIDKEM
Sbjct: 121 NAMIIKVDTDDEYEFSRDMQVRGLPTLFFISPDPKKEAIRTEGLIPIQMMRDIIDKEM 178

[Close]

BLAST of Sed0016890 vs. ExPASy TrEMBL
Match: A0A6J1KPE6 (thioredoxin-like protein CITRX, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496052 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 4.2e-82
Identity = 160/184 (86.96%), Postives = 166/184 (90.22%), Query Frame = 0


Query: 1   MALLQSPKPLQIASNFFPVCNFSAIRPSISIPF-SSSKTHQQNPLLS------SLSATPR 60
           MALLQ PK LQI +N FP+ NFS+ RPSISIPF SSSKTHQQN LLS      SLS TPR
Sbjct: 1   MALLQPPKTLQITANLFPISNFSSTRPSISIPFSSSSKTHQQNALLSSSTTPFSLSTTPR 60

Query: 61  RVLCKPPKGKYIQDDYLVKKMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEML 120
           R+LCKPPKGKYI DDYLVKKMTAEEVQELVKG+R VPLIIDFYATWCGPCILMAQELEML
Sbjct: 61  RILCKPPKGKYIHDDYLVKKMTAEEVQELVKGKRNVPLIIDFYATWCGPCILMAQELEML 120

Query: 121 AVEYENNAMIIKVDTDDEYEFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDII 178
           AVEYENNAMIIKVDTDDEYEFS+DMQVRGLPTLFFISPDP KEAIRTEGLIPIQMMRDII
Sbjct: 121 AVEYENNAMIIKVDTDDEYEFSHDMQVRGLPTLFFISPDPKKEAIRTEGLIPIQMMRDII 180

[Close]

BLAST of Sed0016890 vs. TAIR 10
Match: AT3G06730.1 (Thioredoxin z )

HSP 1 Score: 229.2 bits (583), Expect = 2.6e-60
Identity = 111/153 (72.55%), Postives = 133/153 (86.93%), Query Frame = 0


Query: 25  IRPSISIPFSSSKTHQQNPLLSSLSATPRRVLCKPPKGKYIQDDYLVKKMTAEEVQELVK 84
           IRP ++ PFSSS       L  S    PR++LC PP+GK++++DYLVKK++A+E+QELVK
Sbjct: 35  IRP-VAAPFSSSTA---GNLPFSPLTRPRKLLCPPPRGKFVREDYLVKKLSAQELQELVK 94

Query: 85  GERTVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIIKVDTDDEYEFSNDMQVRGLP 144
           G+R VPLI+DFYATWCGPCILMAQELEMLAVEYE+NA+I+KVDTDDEYEF+ DMQVRGLP
Sbjct: 95  GDRKVPLIVDFYATWCGPCILMAQELEMLAVEYESNAIIVKVDTDDEYEFARDMQVRGLP 154

Query: 145 TLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 178
           TLFFISPDP+K+AIRTEGLIP+QMM DIID EM
Sbjct: 155 TLFFISPDPSKDAIRTEGLIPLQMMHDIIDNEM 183

[Close]

BLAST of Sed0016890 vs. TAIR 10
Match: AT1G43560.1 (thioredoxin Y2 )

HSP 1 Score: 62.4 bits (150), Expect = 4.2e-10
Identity = 34/106 (32.08%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 72  KKMTAEEVQELVKGERTVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIIKVDTDDE 131
           KK T     +L++     P+++DFYATWCGPC LM   L  ++   ++   ++K+DT+  
Sbjct: 61  KKQTFNSFDDLLQNS-DKPVLVDFYATWCGPCQLMVPILNEVSETLKDIIAVVKIDTEKY 120

Query: 132 YEFSNDMQVRGLPTLFFISPDPNKEAIRTEGLIPIQMMRDIIDKEM 178
              +N  Q+  LPT  FI     K   R EG +P   + + I+  +
Sbjct: 121 PSLANKYQIEALPT--FILFKDGKLWDRFEGALPANQLVERIENSL 163

[Close]

BLAST of Sed0016890 vs. TAIR 10
Match: AT1G50320.1 (thioredoxin X )

HSP 1 Score: 61.2 bits (147), Expect = 9.5e-10
Identity = 29/89 (32.58%), Postives = 45/89 (50.56%), Query Frame = 0


Query: 86  ERTVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIIKVDTDDEYEFSNDMQVRGLPT 145
           E   P++++F ATWCGPC L+   +E L+ EY +   I+K+D D   +   + +V GLP 
Sbjct: 85  ESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPH 144

Query: 146 LFFISPDPNKEAIRTEGLIPIQMMRDIID 175
                        R EG I    +++ ID
Sbjct: 145 FILFKDGKEVPGSRREGAITKAKLKEYID 173

[Close]

BLAST of Sed0016890 vs. TAIR 10
Match: AT1G76760.1 (thioredoxin Y1 )

HSP 1 Score: 57.4 bits (137), Expect = 1.4e-08
Identity = 35/134 (26.12%), Postives = 62/134 (46.27%), Query Frame = 0


Query: 44  LLSSLSATPRRVLCKPPKGKYIQDDYLVKKMTAEEVQELVKGERTVPLIIDFYATWCGPC 103
           L S+   TPRR+                KK T +  ++L+      P+++D+YATWCGPC
Sbjct: 52  LSSTTRCTPRRI--------------EAKKQTFDSFEDLLVNS-DKPVLVDYYATWCGPC 111

Query: 104 ILMAQELEMLAVEYENNAMIIKVDTDDEYEFSNDMQVRGLPTLFFISPDPNKEAIRTEGL 163
             M   L  ++   ++   ++K+DT+     +N  ++  LPT  FI     +   R EG 
Sbjct: 112 QFMVPILNEVSETLKDKIQVVKIDTEKYPSIANKYKIEALPT--FILFKDGEPCDRFEGA 168

Query: 164 IPIQMMRDIIDKEM 178
           +  + +   I+  +
Sbjct: 172 LTAKQLIQRIEDSL 168

[Close]

BLAST of Sed0016890 vs. TAIR 10
Match: AT3G15360.1 (thioredoxin M-type 4 )

HSP 1 Score: 56.2 bits (134), Expect = 3.0e-08
Identity = 24/90 (26.67%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 86  ERTVPLIIDFYATWCGPCILMAQELEMLAVEYENNAMIIKVDTDDEYEFSNDMQVRGLPT 145
           E  VP++++F+A WCGPC ++   ++ LA ++       K++TD+    +N   +R +PT
Sbjct: 102 ESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPT 161

Query: 146 LFFISPDPNKEAIRTEGLIPIQMMRDIIDK 176
           +        K++I   G +P + +   I++
Sbjct: 162 VIIFKGGEKKDSI--IGAVPRETLEKTIER 189

The following BLAST results are available for this feature:

BLAST of Sed0016890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064789.1	7.9e-83	86.34	thioredoxin-like protein CITRX [Cucumis melo var. makuwa]	[more]
XP_004146769.1	1.0e-82	85.79	thioredoxin-like protein CITRX, chloroplastic [Cucumis sativus] >KGN47767.1 hypo...	[more]
XP_038884365.1	1.0e-82	86.41	thioredoxin-like protein CITRX, chloroplastic [Benincasa hispida]	[more]
XP_023538068.1	2.3e-82	89.89	thioredoxin-like protein CITRX, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022131323.1	5.1e-82	86.34	thioredoxin-like protein CITRX, chloroplastic [Momordica charantia]	[more]

BLAST of Sed0016890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M7X9	3.7e-59	72.55	Thioredoxin-like protein CITRX, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LKW0	1.0e-56	69.09	Thioredoxin-like protein CITRX, chloroplastic OS=Solanum lycopersicum OX=4081 GN...	[more]
Q6JE37	5.0e-56	63.43	Thioredoxin-like protein CITRX2, chloroplastic OS=Nicotiana benthamiana OX=4100 ...	[more]
Q6JE38	1.1e-55	66.46	Thioredoxin-like protein CITRX1, chloroplastic OS=Nicotiana benthamiana OX=4100 ...	[more]
M1A3D5	5.5e-55	69.23	Thioredoxin-like protein CITRX, chloroplastic OS=Solanum tuberosum OX=4113 GN=CI...	[more]

BLAST of Sed0016890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VH45	3.8e-83	86.34	Thioredoxin-like protein CITRX OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0KH97	5.0e-83	85.79	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401380...	[more]
A0A6J1BT12	2.5e-82	86.34	thioredoxin-like protein CITRX, chloroplastic OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1GHF9	3.2e-82	88.76	thioredoxin-like protein CITRX, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1KPE6	4.2e-82	86.96	thioredoxin-like protein CITRX, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Sed0016890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G06730.1	2.6e-60	72.55	Thioredoxin z	[more]
AT1G43560.1	4.2e-10	32.08	thioredoxin Y2	[more]
AT1G50320.1	9.5e-10	32.58	thioredoxin X	[more]
AT1G76760.1	1.4e-08	26.12	thioredoxin Y1	[more]
AT3G15360.1	3.0e-08	26.67	thioredoxin M-type 4	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 139..150 score: 36.06 coord: 91..99 score: 45.99 coord: 99..108 score: 50.94
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 64..176 e-value: 8.6E-24 score: 85.6
None	No IPR available	PANTHER	PTHR47834:SF2	THIOREDOXIN-LIKE PROTEIN CITRX, CHLOROPLASTIC	coord: 31..177
None	No IPR available	CDD	cd02947	TRX_family	coord: 77..174 e-value: 3.81225E-22 score: 83.3764
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 72..162 e-value: 1.6E-18 score: 66.6
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 45..177 score: 12.951883
IPR044182	Thioredoxin-like protein CITRX, chloroplastic	PANTHER	PTHR47834	THIOREDOXIN-LIKE PROTEIN CITRX, CHLOROPLASTIC	coord: 31..177
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 70..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016890.1	Sed0016890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0009657	plastid organization
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0047134	protein-disulfide reductase (NAD(P)) activity
molecular_function	GO:0015035	protein-disulfide reductase activity