Sed0016711 (gene) Chayote v1

Overview


Name	Sed0016711
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Pentatricopeptide repeat-containing protein
Location	LG01: 3897637 .. 3898665 (-)
RNA-Seq Expression	Sed0016711
Synteny	Sed0016711

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAACTGGAACAGCAAAGACTGCATTTTTGTTCCATTTTCATCAATTTCTGCGGAAATGTTCTTCTATCCAGTCAATATCTCCATCACAAACCCTTAAAGAAAGCATTAAAGCTGCAGTTGAGTCAAAATCGTATAAGACACTTCCAGATTTGTTTCCTTCTTTGCAGGAAGCTTGTCAAAACCCCAACCCTTTTTCCTTTCTCTCAGCATTGCCGGATAACTTCAGAACACGAGTTGTGGATGAGATATTGCAGTCTTTAATCCCTCTCAGACCTCGCTCGAGGCCCCATTTTGTTCACGCCTCTCTGCTTTTCTACACTCTTCAAAGCCCTTCACCCTTCCCCCTCTCTCTTCCTGTCCTCCAGCGGATACTCCTCTCTGGTTGTGTTCCTGCCCCTCAGACCGACCTTCTACTCTCGTCGGCATGGCTAAGACTACGTCGCGAGTCTAAGTCTGTTGCTAGCATCTTGTTGGACATGCGTTCGATTGGATATAAGCCTGACAGCAGCGTATGTAATTATCTTATATCCTCTCTTTGTGCCACTGATGAGTTAGCAGAGGCTTTTCATGTCTTGAAGGGTATGGGAGGAGCAGGATGTGTTCCGGACTTGGAGAGTTATGGCACCTTAATTAGTGCATCAACAGCAGTTAGAAGGACAGCTGAGGCAGTGGAGTTGCTGAAAGAAATGGTTGTAAAAGTTCAATTGACTCCAAGACAAGGAACGATCATCAATGTCGTGGCTGCATTACGAGCAAACCGAGAGATAAGGAGAGCCGTTGAGATCATTGAGCTGTTGGAGAAGGAGAGTCATAATGTTGGATTTGAGAGCTATGAGCTTCTCGTAGAGGGTTTTCTGGAGCGTCGCGAGTATATTTTGGCAGGAAAGGCGGTCATGAGGATGACAGAAAAAGGATTTATACCATATATCAGAGTCAGGCAAAAGGTTGTTGAGGGGCTGGCTGGTATTGGAGAAGCAGAACTTGCTTCTGCTGTAAGACGCAGATTTGCAGAGTTGAGGTCTTAG

mRNA sequence

ATGAAAACTGGAACAGCAAAGACTGCATTTTTGTTCCATTTTCATCAATTTCTGCGGAAATGTTCTTCTATCCAGTCAATATCTCCATCACAAACCCTTAAAGAAAGCATTAAAGCTGCAGTTGAGTCAAAATCGTATAAGACACTTCCAGATTTGTTTCCTTCTTTGCAGGAAGCTTGTCAAAACCCCAACCCTTTTTCCTTTCTCTCAGCATTGCCGGATAACTTCAGAACACGAGTTGTGGATGAGATATTGCAGTCTTTAATCCCTCTCAGACCTCGCTCGAGGCCCCATTTTGTTCACGCCTCTCTGCTTTTCTACACTCTTCAAAGCCCTTCACCCTTCCCCCTCTCTCTTCCTGTCCTCCAGCGGATACTCCTCTCTGGTTGTGTTCCTGCCCCTCAGACCGACCTTCTACTCTCGTCGGCATGGCTAAGACTACGTCGCGAGTCTAAGTCTGTTGCTAGCATCTTGTTGGACATGCGTTCGATTGGATATAAGCCTGACAGCAGCGTATGTAATTATCTTATATCCTCTCTTTGTGCCACTGATGAGTTAGCAGAGGCTTTTCATGTCTTGAAGGGTATGGGAGGAGCAGGATGTGTTCCGGACTTGGAGAGTTATGGCACCTTAATTAGTGCATCAACAGCAGTTAGAAGGACAGCTGAGGCAGTGGAGTTGCTGAAAGAAATGGTTGTAAAAGTTCAATTGACTCCAAGACAAGGAACGATCATCAATGTCGTGGCTGCATTACGAGCAAACCGAGAGATAAGGAGAGCCGTTGAGATCATTGAGCTGTTGGAGAAGGAGAGTCATAATGTTGGATTTGAGAGCTATGAGCTTCTCGTAGAGGGTTTTCTGGAGCGTCGCGAGTATATTTTGGCAGGAAAGGCGGTCATGAGGATGACAGAAAAAGGATTTATACCATATATCAGAGTCAGGCAAAAGGTTGTTGAGGGGCTGGCTGGTATTGGAGAAGCAGAACTTGCTTCTGCTGTAAGACGCAGATTTGCAGAGTTGAGGTCTTAG

Coding sequence (CDS)

ATGAAAACTGGAACAGCAAAGACTGCATTTTTGTTCCATTTTCATCAATTTCTGCGGAAATGTTCTTCTATCCAGTCAATATCTCCATCACAAACCCTTAAAGAAAGCATTAAAGCTGCAGTTGAGTCAAAATCGTATAAGACACTTCCAGATTTGTTTCCTTCTTTGCAGGAAGCTTGTCAAAACCCCAACCCTTTTTCCTTTCTCTCAGCATTGCCGGATAACTTCAGAACACGAGTTGTGGATGAGATATTGCAGTCTTTAATCCCTCTCAGACCTCGCTCGAGGCCCCATTTTGTTCACGCCTCTCTGCTTTTCTACACTCTTCAAAGCCCTTCACCCTTCCCCCTCTCTCTTCCTGTCCTCCAGCGGATACTCCTCTCTGGTTGTGTTCCTGCCCCTCAGACCGACCTTCTACTCTCGTCGGCATGGCTAAGACTACGTCGCGAGTCTAAGTCTGTTGCTAGCATCTTGTTGGACATGCGTTCGATTGGATATAAGCCTGACAGCAGCGTATGTAATTATCTTATATCCTCTCTTTGTGCCACTGATGAGTTAGCAGAGGCTTTTCATGTCTTGAAGGGTATGGGAGGAGCAGGATGTGTTCCGGACTTGGAGAGTTATGGCACCTTAATTAGTGCATCAACAGCAGTTAGAAGGACAGCTGAGGCAGTGGAGTTGCTGAAAGAAATGGTTGTAAAAGTTCAATTGACTCCAAGACAAGGAACGATCATCAATGTCGTGGCTGCATTACGAGCAAACCGAGAGATAAGGAGAGCCGTTGAGATCATTGAGCTGTTGGAGAAGGAGAGTCATAATGTTGGATTTGAGAGCTATGAGCTTCTCGTAGAGGGTTTTCTGGAGCGTCGCGAGTATATTTTGGCAGGAAAGGCGGTCATGAGGATGACAGAAAAAGGATTTATACCATATATCAGAGTCAGGCAAAAGGTTGTTGAGGGGCTGGCTGGTATTGGAGAAGCAGAACTTGCTTCTGCTGTAAGACGCAGATTTGCAGAGTTGAGGTCTTAG

Protein sequence

MKTGTAKTAFLFHFHQFLRKCSSIQSISPSQTLKESIKAAVESKSYKTLPDLFPSLQEACQNPNPFSFLSALPDNFRTRVVDEILQSLIPLRPRSRPHFVHASLLFYTLQSPSPFPLSLPVLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLISSLCATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQLTPRQGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGKAVMRMTEKGFIPYIRVRQKVVEGLAGIGEAELASAVRRRFAELRS

Homology

[Close]

BLAST of Sed0016711 vs. NCBI nr
Match: XP_022971046.1 (pentatricopeptide repeat-containing protein At1g06270 [Cucurbita maxima] >XP_022971047.1 pentatricopeptide repeat-containing protein At1g06270 [Cucurbita maxima] >XP_022971048.1 pentatricopeptide repeat-containing protein At1g06270 [Cucurbita maxima])

HSP 1 Score: 570.9 bits (1470), Expect = 7.6e-159
Identity = 301/343 (87.76%), Postives = 319/343 (93.00%), Query Frame = 0


Query: 1   MKTGTAKT-AFLFHFHQFLRKCSSIQSISPSQTLKESIKAAVESKSYKTLPDLFPSLQEA 60
           MK GTA+T +FL HFHQFLR CSS+ SI+P+QTL+ESIKAAVESKSYK LPDLFPSLQEA
Sbjct: 1   MKLGTARTSSFLLHFHQFLRPCSSVPSITPAQTLQESIKAAVESKSYKKLPDLFPSLQEA 60

Query: 61  CQNPNPFSFLSALPDNFRTRVVDEILQSLIPLRPRSRPHFVHASLLFYTLQSPSPFPLSL 120
           CQNPNPFSFLS  P NFRT+VVDEILQSLIPLRPRSRP FVHASLLFYTLQSPSP PLSL
Sbjct: 61  CQNPNPFSFLSTFPVNFRTQVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120

Query: 121 PVLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLISS 180
           PVLQRIL SGC P PQT LLLSSAWL+ RR+SKSVASILLDMRSIGY+PDSS+CNYLISS
Sbjct: 121 PVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISS 180

Query: 181 LCATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQLTP 240
           LCA DELAEAF VLKGMGGAGCVPDLESYGTLIS+STAVRRTAEAVELLKEMVVKV+LTP
Sbjct: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240

Query: 241 RQGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGKAV 300
           R+GT+INVVAALRANREIRRAVEIIELLEKES+NVGFESYE+LVEG LE REYILAGK V
Sbjct: 241 RRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300

Query: 301 MRMTEKGFIPYIRVRQKVVEGLAGIGEAELASAVRRRFAELRS 343
           M MTEKG+IPYIRVR KVVEGLAGIGE ELASAVRRRFAELRS
Sbjct: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 343

[Close]

BLAST of Sed0016711 vs. NCBI nr
Match: XP_022947166.1 (pentatricopeptide repeat-containing protein At1g06270 [Cucurbita moschata] >XP_022947167.1 pentatricopeptide repeat-containing protein At1g06270 [Cucurbita moschata] >XP_022947168.1 pentatricopeptide repeat-containing protein At1g06270 [Cucurbita moschata])

HSP 1 Score: 567.0 bits (1460), Expect = 1.1e-157
Identity = 298/343 (86.88%), Postives = 319/343 (93.00%), Query Frame = 0


Query: 1   MKTGTAKT-AFLFHFHQFLRKCSSIQSISPSQTLKESIKAAVESKSYKTLPDLFPSLQEA 60
           MK GTA+T +FL HFHQFLR+CSS+ SI+P+Q+L+ESI+AAVESKSY+ LPDLFPSLQEA
Sbjct: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQKLPDLFPSLQEA 60

Query: 61  CQNPNPFSFLSALPDNFRTRVVDEILQSLIPLRPRSRPHFVHASLLFYTLQSPSPFPLSL 120
           CQNPNPFSFLS  P NFRT VVDEILQSLIPLRPRSRP FVHASLLFYTLQSPSP PLSL
Sbjct: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120

Query: 121 PVLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLISS 180
           PVLQRIL SGCVP PQT LLLSS WL+ RR+SKSVASILL+MRSIGY+PDSS+CNYLISS
Sbjct: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYLISS 180

Query: 181 LCATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQLTP 240
           LCA DELAEAF VLKGMGGAGCVPDLESYGTLIS+STAVRRTAEAVELLKEMVVKV+LTP
Sbjct: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240

Query: 241 RQGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGKAV 300
           RQGT+INVVAALRANREIRRAVEIIELLEKES+NVGFESYE+LVEG LE REYILAGK V
Sbjct: 241 RQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300

Query: 301 MRMTEKGFIPYIRVRQKVVEGLAGIGEAELASAVRRRFAELRS 343
           M MTEKG+IPYIRVR KVVEGLAGIGE ELASAVRRRFAELRS
Sbjct: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 343

[Close]

BLAST of Sed0016711 vs. NCBI nr
Match: XP_023533787.1 (pentatricopeptide repeat-containing protein At1g06270 [Cucurbita pepo subsp. pepo] >XP_023533788.1 pentatricopeptide repeat-containing protein At1g06270 [Cucurbita pepo subsp. pepo] >XP_023533789.1 pentatricopeptide repeat-containing protein At1g06270 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 566.2 bits (1458), Expect = 1.9e-157
Identity = 298/343 (86.88%), Postives = 318/343 (92.71%), Query Frame = 0


Query: 1   MKTGTAKT-AFLFHFHQFLRKCSSIQSISPSQTLKESIKAAVESKSYKTLPDLFPSLQEA 60
           MK GTA+T +FL HFHQFLR+CSS+ SI+P+Q+L+ESI+AAVESKSY+ LPDLFPSLQEA
Sbjct: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQKLPDLFPSLQEA 60

Query: 61  CQNPNPFSFLSALPDNFRTRVVDEILQSLIPLRPRSRPHFVHASLLFYTLQSPSPFPLSL 120
           CQNPNPFSFLS  P NFRT VVDEILQSLIPLRPRSRP FVHASLLFYTLQSPSP PLSL
Sbjct: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120

Query: 121 PVLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLISS 180
           PVLQRIL SGCVP PQT LLLSS WL+ RR+SKSVASILLDMRSIGY+PDSS+CNYLISS
Sbjct: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISS 180

Query: 181 LCATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQLTP 240
           LCA DELAEAF VLKGMGGAGCVPDLESYGTLIS+STAVRRTAEAVELLKEMVVKV+LTP
Sbjct: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240

Query: 241 RQGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGKAV 300
           RQGT+INVVAALRAN EIRRAVEIIELLEKES+NVGFESYE+LVEG LE REYILAGK V
Sbjct: 241 RQGTVINVVAALRANGEIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300

Query: 301 MRMTEKGFIPYIRVRQKVVEGLAGIGEAELASAVRRRFAELRS 343
           M MTEKG+IPYIRVR KVVEGLAGIGE ELASAVRRRFAELRS
Sbjct: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 343

[Close]

BLAST of Sed0016711 vs. NCBI nr
Match: KAG6604878.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 565.1 bits (1455), Expect = 4.2e-157
Identity = 297/343 (86.59%), Postives = 318/343 (92.71%), Query Frame = 0


Query: 1   MKTGTAKT-AFLFHFHQFLRKCSSIQSISPSQTLKESIKAAVESKSYKTLPDLFPSLQEA 60
           MK GTA+T +FL HFHQFLR+CSS+ SI+P+Q+L+ESI+AAVESKSY+ LPDLFPSLQEA
Sbjct: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQRLPDLFPSLQEA 60

Query: 61  CQNPNPFSFLSALPDNFRTRVVDEILQSLIPLRPRSRPHFVHASLLFYTLQSPSPFPLSL 120
           CQNPNPFSFLS  P NFRT VVDEILQSLIPLRPRSRP FVHASLLFYTLQSPSP PLSL
Sbjct: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120

Query: 121 PVLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLISS 180
           PVLQRIL SGCVP PQT LLLSS WL+ RR+SKSVASILL+MRSIGY+PDSS+CNYLISS
Sbjct: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYLISS 180

Query: 181 LCATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQLTP 240
           LCA DELAEAF VLKGMGGAGCVPDLESYGTLIS+STAVRRTAEAVELLKEMVVKV+LTP
Sbjct: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240

Query: 241 RQGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGKAV 300
           RQGT+INVVAALRANREIRRAVEIIELLEKES+NVGFESYE+LVEG LE  EYILAGK V
Sbjct: 241 RQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECHEYILAGKVV 300

Query: 301 MRMTEKGFIPYIRVRQKVVEGLAGIGEAELASAVRRRFAELRS 343
           M MTEKG+IPYIRVR KVVEGLAGIGE ELASAVRRRFAELRS
Sbjct: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 343

[Close]

BLAST of Sed0016711 vs. NCBI nr
Match: XP_022140758.1 (pentatricopeptide repeat-containing protein At1g06270 [Momordica charantia])

HSP 1 Score: 539.7 bits (1389), Expect = 1.9e-149
Identity = 288/342 (84.21%), Postives = 308/342 (90.06%), Query Frame = 0


Query: 1   MKTGTAKTAFLFHFHQFLRKCSSIQSISPSQTLKESIKAAVESKSYKTLPDLFPSLQEAC 60
           MKTGT   +    FHQFLR+ SSI +ISPSQTL+ESIKAAVESK YK LPDLFPSL++AC
Sbjct: 1   MKTGTTNFSAFLLFHQFLRQYSSIHTISPSQTLQESIKAAVESKLYKKLPDLFPSLRDAC 60

Query: 61  QNPNPFSFLSALPDNFRTRVVDEILQSLIPLRPRSRPHFVHASLLFYTLQSPSPFPLSLP 120
           QNP+PFSFLS LP NF T+VVDEILQSLIPLRPRSRP  V+ASLLFYTLQSPSP PLSL 
Sbjct: 61  QNPSPFSFLSTLPVNFTTQVVDEILQSLIPLRPRSRPQLVYASLLFYTLQSPSPLPLSLS 120

Query: 121 VLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLISSL 180
           VLQRIL SGCVPAPQT LLLSSAWL+ R +SKSVA+ILLDMRSIGY+PDSS+CNYLISSL
Sbjct: 121 VLQRILHSGCVPAPQTHLLLSSAWLKQRGQSKSVANILLDMRSIGYEPDSSICNYLISSL 180

Query: 181 CATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQLTPR 240
           CA DELAEA  VLK MGGAGC+PDLESYGTLI ASTAVRRT EAVELLKEMVVKV+LTPR
Sbjct: 181 CAIDELAEASQVLKAMGGAGCIPDLESYGTLIGASTAVRRTREAVELLKEMVVKVKLTPR 240

Query: 241 QGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGKAVM 300
           QGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEG L+ REYILAGK VM
Sbjct: 241 QGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGCLDCREYILAGKVVM 300

Query: 301 RMTEKGFIPYIRVRQKVVEGLAGIGEAELASAVRRRFAELRS 343
            MT++GFIPYIRVRQKVVEGLA +GE ELASAVRRRFAELRS
Sbjct: 301 GMTKRGFIPYIRVRQKVVEGLADVGEVELASAVRRRFAELRS 342

[Close]

BLAST of Sed0016711 vs. ExPASy Swiss-Prot
Match: Q9LNC0 (Pentatricopeptide repeat-containing protein At1g06270 OS=Arabidopsis thaliana OX=3702 GN=At1g06270 PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 5.2e-94
Identity = 182/318 (57.23%), Postives = 236/318 (74.21%), Query Frame = 0


Query: 25  QSISPSQTLKESIKAAVESKSYKTLPDLFPSLQEACQNPNPFSFLSALPDNFRTRVVDEI 84
           +SIS  + ++++IK AVE+K Y  +P+L  SL+E  QN   FSFLSA   + R RV+DEI
Sbjct: 26  RSISSFEAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSTLFSFLSAFQRHHRIRVIDEI 85

Query: 85  LQSLIPLRPRSRPHFVHASLLFYTLQSPSPFPLSLPVLQRILLSGCVPAPQTDLLLSSAW 144
           LQS +P+RPRS P  V++SLL Y LQS  P PLS  +LQR L SGC+P PQT LLLS AW
Sbjct: 86  LQSFVPVRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQTHLLLSDAW 145

Query: 145 LRLRRESKSVASILLDMRSIGYKPDSSVCNYLISSLCATDELAEAFHVLKGMGGAGCVPD 204
           L  RR S+SVA I+ +M+ IGY PD+  CNYL+SSLCA D+L EA  V++ M  AGC+PD
Sbjct: 146 LERRRGSQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEMSAAGCIPD 205

Query: 205 LESYGTLISASTAVRRTAEAVELLKEMVVKVQLTPRQGTIINVVAALRANREIRRAVEII 264
           +ESYG +I++    R+T + V+++KEMV K  ++PR+G +  V AALRANREI +A+E+I
Sbjct: 206 VESYGAVINSLCLARKTTDVVKIVKEMVSKAGISPRKGMLTKVAAALRANREIWKAIEMI 265

Query: 265 ELLEKESHNVGFESYELLVEGFLERREYILAGKAVMRMTEKGFIPYIRVRQKVVEGLAGI 324
           E +E   + V FESYE++VEG LE REYILAGK VMRMT++GFIPYI+VRQKVVE L  I
Sbjct: 266 EFVESRDYPVEFESYEVVVEGCLEVREYILAGKVVMRMTDRGFIPYIKVRQKVVERLINI 325

Query: 325 GEAELASAVRRRFAELRS 343
           GE +LA  VR+R +ELRS
Sbjct: 326 GEWKLACTVRQRVSELRS 343

[Close]

BLAST of Sed0016711 vs. ExPASy Swiss-Prot
Match: Q9LFF1 (Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MEE40 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.9e-11
Identity = 77/321 (23.99%), Postives = 137/321 (42.68%), Query Frame = 0


Query: 17  FLRKCSSIQSISPSQ-TLKESIKAAVESKSYKTLPDLFPSLQEACQNPNPFSFLSALPDN 76
           F+++ S+     P Q T    +    ++   K   ++   + +   +P+ +++ S +   
Sbjct: 281 FIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340

Query: 77  FRTRVVDEILQSLIPLRPRS-RPHFVHASLLFYTLQSPSPFPLSLPVLQRILLSGCVPAP 136
            +   V E ++ L  +  R   P+ V  + L  TL   +    +  + + +   G +P  
Sbjct: 341 CKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 400

Query: 137 QTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLISSLCATDELAEAFHVLK 196
            T   L    L L R  +    +  +MRS G +PD    N LI SLC+  +L EA ++LK
Sbjct: 401 CTFNSLIQG-LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLK 460

Query: 197 GMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQLTPRQGTIINVVAALRAN 256
            M  +GC   + +Y TLI       +T EA E+  EM V   ++    T   ++  L  +
Sbjct: 461 QMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH-GVSRNSVTYNTLIDGLCKS 520

Query: 257 REIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGKAVMRMTEKGFIPYIRVR 316
           R +  A ++++ +  E       +Y  L+  F    +   A   V  MT  G  P I   
Sbjct: 521 RRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTY 580

Query: 317 QKVVEGLAGIGEAELASAVRR 336
             ++ GL   G  E+AS + R
Sbjct: 581 GTLISGLCKAGRVEVASKLLR 599

[Close]

BLAST of Sed0016711 vs. ExPASy Swiss-Prot
Match: Q9SZ52 (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGR3 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-09
Identity = 53/204 (25.98%), Postives = 97/204 (47.55%), Query Frame = 0


Query: 118 SLPVLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLI 177
           ++ V +R++L G  P+ QT   L    L  RR+  SV  +L +M ++G KP+       I
Sbjct: 207 AMEVYRRMILEGFRPSLQTYSSL-MVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICI 266

Query: 178 SSLCATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQL 237
             L    ++ EA+ +LK M   GC PD+ +Y  LI A    R+   A E+ ++M    + 
Sbjct: 267 RVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTG-RH 326

Query: 238 TPRQGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGK 297
            P + T I ++     NR++    +    +EK+ H     ++ +LV+   +   +  A  
Sbjct: 327 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 386

Query: 298 AVMRMTEKGFIPYIRVRQKVVEGL 322
            +  M ++G +P +     ++ GL
Sbjct: 387 TLDVMRDQGILPNLHTYNTLICGL 408

[Close]

BLAST of Sed0016711 vs. ExPASy Swiss-Prot
Match: Q3ECK2 (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62680 PE=2 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 8.8e-09
Identity = 56/204 (27.45%), Postives = 95/204 (46.57%), Query Frame = 0


Query: 117 LSLPVLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYL 176
           L+L +L ++L  G  P   T   L + + R  R S +V S++  M  IGYKPD    N +
Sbjct: 138 LALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAV-SLVDKMVEIGYKPDIVAYNAI 197

Query: 177 ISSLCATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQ 236
           I SLC T  + +AF   K +   G  P++ +Y  L++      R ++A  LL +M +K +
Sbjct: 198 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKK 257

Query: 237 LTPRQGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAG 296
           +TP   T   ++ A   N ++  A E+ E + + S +    +Y  L+ G         A 
Sbjct: 258 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 317

Query: 297 KAVMRMTEKGFIPYIRVRQKVVEG 321
           +    M  KG +  +     ++ G
Sbjct: 318 QMFDLMVSKGCLADVVSYNTLING 339

[Close]

BLAST of Sed0016711 vs. ExPASy Swiss-Prot
Match: Q9FMF6 (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.6e-08
Identity = 51/177 (28.81%), Postives = 81/177 (45.76%), Query Frame = 0


Query: 157 ILLDMRSIGYKPDSSVCNYLISSLCATDELAEAFHVLKGMGGAGCVPDLESYGTLISAST 216
           +L DMR+ G KP+      L+   C   ++ EA++VL  M   G  P+   +  LISA  
Sbjct: 411 VLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC 470

Query: 217 AVRRTAEAVELLKEMVVKVQLTPRQGTIINVVAALRANREIRRAVEIIELLEKESHNVGF 276
              R  EAVE+ +EM  K    P   T  ++++ L    EI+ A+ ++  +  E      
Sbjct: 471 KEHRIPEAVEIFREMPRK-GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANT 530

Query: 277 ESYELLVEGFLERREYILAGKAVMRMTEKGFIPYIRVRQKVVEGLAGIGEAELASAV 334
            +Y  L+  FL R E   A K V  M  +G          +++GL   GE + A ++
Sbjct: 531 VTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSL 586

[Close]

BLAST of Sed0016711 vs. ExPASy TrEMBL
Match: A0A6J1I5P5 (pentatricopeptide repeat-containing protein At1g06270 OS=Cucurbita maxima OX=3661 GN=LOC111469834 PE=4 SV=1)

HSP 1 Score: 570.9 bits (1470), Expect = 3.7e-159
Identity = 301/343 (87.76%), Postives = 319/343 (93.00%), Query Frame = 0


Query: 1   MKTGTAKT-AFLFHFHQFLRKCSSIQSISPSQTLKESIKAAVESKSYKTLPDLFPSLQEA 60
           MK GTA+T +FL HFHQFLR CSS+ SI+P+QTL+ESIKAAVESKSYK LPDLFPSLQEA
Sbjct: 1   MKLGTARTSSFLLHFHQFLRPCSSVPSITPAQTLQESIKAAVESKSYKKLPDLFPSLQEA 60

Query: 61  CQNPNPFSFLSALPDNFRTRVVDEILQSLIPLRPRSRPHFVHASLLFYTLQSPSPFPLSL 120
           CQNPNPFSFLS  P NFRT+VVDEILQSLIPLRPRSRP FVHASLLFYTLQSPSP PLSL
Sbjct: 61  CQNPNPFSFLSTFPVNFRTQVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120

Query: 121 PVLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLISS 180
           PVLQRIL SGC P PQT LLLSSAWL+ RR+SKSVASILLDMRSIGY+PDSS+CNYLISS
Sbjct: 121 PVLQRILHSGCFPVPQTHLLLSSAWLKQRRQSKSVASILLDMRSIGYEPDSSICNYLISS 180

Query: 181 LCATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQLTP 240
           LCA DELAEAF VLKGMGGAGCVPDLESYGTLIS+STAVRRTAEAVELLKEMVVKV+LTP
Sbjct: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240

Query: 241 RQGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGKAV 300
           R+GT+INVVAALRANREIRRAVEIIELLEKES+NVGFESYE+LVEG LE REYILAGK V
Sbjct: 241 RRGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300

Query: 301 MRMTEKGFIPYIRVRQKVVEGLAGIGEAELASAVRRRFAELRS 343
           M MTEKG+IPYIRVR KVVEGLAGIGE ELASAVRRRFAELRS
Sbjct: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 343

[Close]

BLAST of Sed0016711 vs. ExPASy TrEMBL
Match: A0A6J1G5M7 (pentatricopeptide repeat-containing protein At1g06270 OS=Cucurbita moschata OX=3662 GN=LOC111451115 PE=4 SV=1)

HSP 1 Score: 567.0 bits (1460), Expect = 5.3e-158
Identity = 298/343 (86.88%), Postives = 319/343 (93.00%), Query Frame = 0


Query: 1   MKTGTAKT-AFLFHFHQFLRKCSSIQSISPSQTLKESIKAAVESKSYKTLPDLFPSLQEA 60
           MK GTA+T +FL HFHQFLR+CSS+ SI+P+Q+L+ESI+AAVESKSY+ LPDLFPSLQEA
Sbjct: 1   MKLGTARTSSFLLHFHQFLRQCSSVPSITPAQSLQESIRAAVESKSYQKLPDLFPSLQEA 60

Query: 61  CQNPNPFSFLSALPDNFRTRVVDEILQSLIPLRPRSRPHFVHASLLFYTLQSPSPFPLSL 120
           CQNPNPFSFLS  P NFRT VVDEILQSLIPLRPRSRP FVHASLLFYTLQSPSP PLSL
Sbjct: 61  CQNPNPFSFLSTFPVNFRTHVVDEILQSLIPLRPRSRPQFVHASLLFYTLQSPSPLPLSL 120

Query: 121 PVLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLISS 180
           PVLQRIL SGCVP PQT LLLSS WL+ RR+SKSVASILL+MRSIGY+PDSS+CNYLISS
Sbjct: 121 PVLQRILHSGCVPVPQTHLLLSSVWLKQRRQSKSVASILLNMRSIGYEPDSSICNYLISS 180

Query: 181 LCATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQLTP 240
           LCA DELAEAF VLKGMGGAGCVPDLESYGTLIS+STAVRRTAEAVELLKEMVVKV+LTP
Sbjct: 181 LCAIDELAEAFQVLKGMGGAGCVPDLESYGTLISSSTAVRRTAEAVELLKEMVVKVKLTP 240

Query: 241 RQGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGKAV 300
           RQGT+INVVAALRANREIRRAVEIIELLEKES+NVGFESYE+LVEG LE REYILAGK V
Sbjct: 241 RQGTVINVVAALRANREIRRAVEIIELLEKESYNVGFESYEILVEGCLECREYILAGKVV 300

Query: 301 MRMTEKGFIPYIRVRQKVVEGLAGIGEAELASAVRRRFAELRS 343
           M MTEKG+IPYIRVR KVVEGLAGIGE ELASAVRRRFAELRS
Sbjct: 301 MGMTEKGYIPYIRVRHKVVEGLAGIGETELASAVRRRFAELRS 343

[Close]

BLAST of Sed0016711 vs. ExPASy TrEMBL
Match: A0A6J1CIR0 (pentatricopeptide repeat-containing protein At1g06270 OS=Momordica charantia OX=3673 GN=LOC111011343 PE=4 SV=1)

HSP 1 Score: 539.7 bits (1389), Expect = 9.1e-150
Identity = 288/342 (84.21%), Postives = 308/342 (90.06%), Query Frame = 0


Query: 1   MKTGTAKTAFLFHFHQFLRKCSSIQSISPSQTLKESIKAAVESKSYKTLPDLFPSLQEAC 60
           MKTGT   +    FHQFLR+ SSI +ISPSQTL+ESIKAAVESK YK LPDLFPSL++AC
Sbjct: 1   MKTGTTNFSAFLLFHQFLRQYSSIHTISPSQTLQESIKAAVESKLYKKLPDLFPSLRDAC 60

Query: 61  QNPNPFSFLSALPDNFRTRVVDEILQSLIPLRPRSRPHFVHASLLFYTLQSPSPFPLSLP 120
           QNP+PFSFLS LP NF T+VVDEILQSLIPLRPRSRP  V+ASLLFYTLQSPSP PLSL 
Sbjct: 61  QNPSPFSFLSTLPVNFTTQVVDEILQSLIPLRPRSRPQLVYASLLFYTLQSPSPLPLSLS 120

Query: 121 VLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLISSL 180
           VLQRIL SGCVPAPQT LLLSSAWL+ R +SKSVA+ILLDMRSIGY+PDSS+CNYLISSL
Sbjct: 121 VLQRILHSGCVPAPQTHLLLSSAWLKQRGQSKSVANILLDMRSIGYEPDSSICNYLISSL 180

Query: 181 CATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQLTPR 240
           CA DELAEA  VLK MGGAGC+PDLESYGTLI ASTAVRRT EAVELLKEMVVKV+LTPR
Sbjct: 181 CAIDELAEASQVLKAMGGAGCIPDLESYGTLIGASTAVRRTREAVELLKEMVVKVKLTPR 240

Query: 241 QGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGKAVM 300
           QGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEG L+ REYILAGK VM
Sbjct: 241 QGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGCLDCREYILAGKVVM 300

Query: 301 RMTEKGFIPYIRVRQKVVEGLAGIGEAELASAVRRRFAELRS 343
            MT++GFIPYIRVRQKVVEGLA +GE ELASAVRRRFAELRS
Sbjct: 301 GMTKRGFIPYIRVRQKVVEGLADVGEVELASAVRRRFAELRS 342

[Close]

BLAST of Sed0016711 vs. ExPASy TrEMBL
Match: A0A5D3D4C7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001070 PE=3 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 7.0e-142
Identity = 273/343 (79.59%), Postives = 301/343 (87.76%), Query Frame = 0


Query: 1   MKTGTAKT-AFLFHFHQFLRKCSSIQSISPSQTLKESIKAAVESKSYKTLPDLFPSLQEA 60
           M  G  KT AFL +FH FL +CSSI SISPSQTL++SIKAAVESKSYK LP LFPSLQEA
Sbjct: 1   MNIGRTKTSAFLLNFHHFLEQCSSIHSISPSQTLQDSIKAAVESKSYKKLPGLFPSLQEA 60

Query: 61  CQNPNPFSFLSALPDNFRTRVVDEILQSLIPLRPRSRPHFVHASLLFYTLQSPSPFPLSL 120
           C NPN F FLS  P N RT+VVDEILQSLI +RPRS+  FVH SLLFYTLQSPSPFPLSL
Sbjct: 61  CHNPNLFLFLSTFPLNLRTQVVDEILQSLIFVRPRSKSQFVHGSLLFYTLQSPSPFPLSL 120

Query: 121 PVLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLISS 180
           PVLQRIL SGCVP+PQT  LLSSAWL+ R ++KSVA+IL+DM+SIGYKPDS++CNYLISS
Sbjct: 121 PVLQRILHSGCVPSPQTHFLLSSAWLKQRSQAKSVANILMDMQSIGYKPDSNICNYLISS 180

Query: 181 LCATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQLTP 240
           LC+  ELAEAF VLKGMGGAGCVPDLESYGTLI A+TAVRRT +AVELLKEMVVKV+L P
Sbjct: 181 LCSIGELAEAFQVLKGMGGAGCVPDLESYGTLIRAATAVRRTDKAVELLKEMVVKVKLMP 240

Query: 241 RQGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGKAV 300
           RQ TIINVVAALRANRE+RRAVEIIELLE++SH+VGFESYELLVEG LE REYILAGK +
Sbjct: 241 RQRTIINVVAALRANREVRRAVEIIELLERDSHDVGFESYELLVEGCLECREYILAGKVI 300

Query: 301 MRMTEKGFIPYIRVRQKVVEGLAGIGEAELASAVRRRFAELRS 343
           M MT++GFIPYI+VRQKVVEGL GIGE ELASAVRRRF EL S
Sbjct: 301 MAMTDRGFIPYIKVRQKVVEGLYGIGELELASAVRRRFVELGS 343

[Close]

BLAST of Sed0016711 vs. ExPASy TrEMBL
Match: A0A1S3C1B6 (pentatricopeptide repeat-containing protein At1g06270 OS=Cucumis melo OX=3656 GN=LOC103495705 PE=3 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 1.2e-141
Identity = 273/343 (79.59%), Postives = 300/343 (87.46%), Query Frame = 0


Query: 1   MKTGTAKT-AFLFHFHQFLRKCSSIQSISPSQTLKESIKAAVESKSYKTLPDLFPSLQEA 60
           M  G  KT AFL +FH FL +CSSI SISPSQTL++SIKAAVESKSYK LP LFPSLQEA
Sbjct: 1   MNIGRTKTSAFLLNFHHFLEQCSSIHSISPSQTLQDSIKAAVESKSYKKLPGLFPSLQEA 60

Query: 61  CQNPNPFSFLSALPDNFRTRVVDEILQSLIPLRPRSRPHFVHASLLFYTLQSPSPFPLSL 120
           C NPN F FLS  P N RT+VVDEILQSLI +RPRS+  FVH SLLFYTLQSPSPFPLSL
Sbjct: 61  CHNPNLFLFLSTFPLNLRTQVVDEILQSLIFVRPRSKSQFVHGSLLFYTLQSPSPFPLSL 120

Query: 121 PVLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLISS 180
           PVLQRIL SGCVP+PQT  LLSSAWL+ R  +KSVA+IL+DM+SIGYKPDS++CNYLISS
Sbjct: 121 PVLQRILHSGCVPSPQTHFLLSSAWLKQRSHAKSVANILMDMQSIGYKPDSNICNYLISS 180

Query: 181 LCATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQLTP 240
           LC+  ELAEAF VLKGMGGAGCVPDLESYGTLI A+TAVRRT +AVELLKEMVVKV+L P
Sbjct: 181 LCSIGELAEAFQVLKGMGGAGCVPDLESYGTLIRAATAVRRTDKAVELLKEMVVKVKLMP 240

Query: 241 RQGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGKAV 300
           RQ TIINVVAALRANRE+RRAVEIIELLE++SH+VGFESYELLVEG LE REYILAGK +
Sbjct: 241 RQRTIINVVAALRANREVRRAVEIIELLERDSHDVGFESYELLVEGCLECREYILAGKVI 300

Query: 301 MRMTEKGFIPYIRVRQKVVEGLAGIGEAELASAVRRRFAELRS 343
           M MT++GFIPYI+VRQKVVEGL GIGE ELASAVRRRF EL S
Sbjct: 301 MAMTDRGFIPYIKVRQKVVEGLYGIGELELASAVRRRFVELGS 343

[Close]

BLAST of Sed0016711 vs. TAIR 10
Match: AT1G06270.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 345.9 bits (886), Expect = 3.7e-95
Identity = 182/318 (57.23%), Postives = 236/318 (74.21%), Query Frame = 0


Query: 25  QSISPSQTLKESIKAAVESKSYKTLPDLFPSLQEACQNPNPFSFLSALPDNFRTRVVDEI 84
           +SIS  + ++++IK AVE+K Y  +P+L  SL+E  QN   FSFLSA   + R RV+DEI
Sbjct: 26  RSISSFEAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSTLFSFLSAFQRHHRIRVIDEI 85

Query: 85  LQSLIPLRPRSRPHFVHASLLFYTLQSPSPFPLSLPVLQRILLSGCVPAPQTDLLLSSAW 144
           LQS +P+RPRS P  V++SLL Y LQS  P PLS  +LQR L SGC+P PQT LLLS AW
Sbjct: 86  LQSFVPVRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLPNPQTHLLLSDAW 145

Query: 145 LRLRRESKSVASILLDMRSIGYKPDSSVCNYLISSLCATDELAEAFHVLKGMGGAGCVPD 204
           L  RR S+SVA I+ +M+ IGY PD+  CNYL+SSLCA D+L EA  V++ M  AGC+PD
Sbjct: 146 LERRRGSQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKVVEEMSAAGCIPD 205

Query: 205 LESYGTLISASTAVRRTAEAVELLKEMVVKVQLTPRQGTIINVVAALRANREIRRAVEII 264
           +ESYG +I++    R+T + V+++KEMV K  ++PR+G +  V AALRANREI +A+E+I
Sbjct: 206 VESYGAVINSLCLARKTTDVVKIVKEMVSKAGISPRKGMLTKVAAALRANREIWKAIEMI 265

Query: 265 ELLEKESHNVGFESYELLVEGFLERREYILAGKAVMRMTEKGFIPYIRVRQKVVEGLAGI 324
           E +E   + V FESYE++VEG LE REYILAGK VMRMT++GFIPYI+VRQKVVE L  I
Sbjct: 266 EFVESRDYPVEFESYEVVVEGCLEVREYILAGKVVMRMTDRGFIPYIKVRQKVVERLINI 325

Query: 325 GEAELASAVRRRFAELRS 343
           GE +LA  VR+R +ELRS
Sbjct: 326 GEWKLACTVRQRVSELRS 343

[Close]

BLAST of Sed0016711 vs. TAIR 10
Match: AT3G53700.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 71.6 bits (174), Expect = 1.4e-12
Identity = 77/321 (23.99%), Postives = 137/321 (42.68%), Query Frame = 0


Query: 17  FLRKCSSIQSISPSQ-TLKESIKAAVESKSYKTLPDLFPSLQEACQNPNPFSFLSALPDN 76
           F+++ S+     P Q T    +    ++   K   ++   + +   +P+ +++ S +   
Sbjct: 281 FIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGL 340

Query: 77  FRTRVVDEILQSLIPLRPRS-RPHFVHASLLFYTLQSPSPFPLSLPVLQRILLSGCVPAP 136
            +   V E ++ L  +  R   P+ V  + L  TL   +    +  + + +   G +P  
Sbjct: 341 CKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDV 400

Query: 137 QTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLISSLCATDELAEAFHVLK 196
            T   L    L L R  +    +  +MRS G +PD    N LI SLC+  +L EA ++LK
Sbjct: 401 CTFNSLIQG-LCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLK 460

Query: 197 GMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQLTPRQGTIINVVAALRAN 256
            M  +GC   + +Y TLI       +T EA E+  EM V   ++    T   ++  L  +
Sbjct: 461 QMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH-GVSRNSVTYNTLIDGLCKS 520

Query: 257 REIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGKAVMRMTEKGFIPYIRVR 316
           R +  A ++++ +  E       +Y  L+  F    +   A   V  MT  G  P I   
Sbjct: 521 RRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTY 580

Query: 317 QKVVEGLAGIGEAELASAVRR 336
             ++ GL   G  E+AS + R
Sbjct: 581 GTLISGLCKAGRVEVASKLLR 599

[Close]

BLAST of Sed0016711 vs. TAIR 10
Match: AT4G31850.1 (proton gradient regulation 3 )

HSP 1 Score: 64.7 bits (156), Expect = 1.7e-10
Identity = 53/204 (25.98%), Postives = 97/204 (47.55%), Query Frame = 0


Query: 118 SLPVLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYLI 177
           ++ V +R++L G  P+ QT   L    L  RR+  SV  +L +M ++G KP+       I
Sbjct: 207 AMEVYRRMILEGFRPSLQTYSSL-MVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICI 266

Query: 178 SSLCATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQL 237
             L    ++ EA+ +LK M   GC PD+ +Y  LI A    R+   A E+ ++M    + 
Sbjct: 267 RVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTG-RH 326

Query: 238 TPRQGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAGK 297
            P + T I ++     NR++    +    +EK+ H     ++ +LV+   +   +  A  
Sbjct: 327 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 386

Query: 298 AVMRMTEKGFIPYIRVRQKVVEGL 322
            +  M ++G +P +     ++ GL
Sbjct: 387 TLDVMRDQGILPNLHTYNTLICGL 408

[Close]

BLAST of Sed0016711 vs. TAIR 10
Match: AT1G62680.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 6.3e-10
Identity = 56/204 (27.45%), Postives = 95/204 (46.57%), Query Frame = 0


Query: 117 LSLPVLQRILLSGCVPAPQTDLLLSSAWLRLRRESKSVASILLDMRSIGYKPDSSVCNYL 176
           L+L +L ++L  G  P   T   L + + R  R S +V S++  M  IGYKPD    N +
Sbjct: 138 LALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAV-SLVDKMVEIGYKPDIVAYNAI 197

Query: 177 ISSLCATDELAEAFHVLKGMGGAGCVPDLESYGTLISASTAVRRTAEAVELLKEMVVKVQ 236
           I SLC T  + +AF   K +   G  P++ +Y  L++      R ++A  LL +M +K +
Sbjct: 198 IDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDM-IKKK 257

Query: 237 LTPRQGTIINVVAALRANREIRRAVEIIELLEKESHNVGFESYELLVEGFLERREYILAG 296
           +TP   T   ++ A   N ++  A E+ E + + S +    +Y  L+ G         A 
Sbjct: 258 ITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEAN 317

Query: 297 KAVMRMTEKGFIPYIRVRQKVVEG 321
           +    M  KG +  +     ++ G
Sbjct: 318 QMFDLMVSKGCLADVVSYNTLING 339

[Close]

BLAST of Sed0016711 vs. TAIR 10
Match: AT5G64320.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-09
Identity = 51/177 (28.81%), Postives = 81/177 (45.76%), Query Frame = 0


Query: 157 ILLDMRSIGYKPDSSVCNYLISSLCATDELAEAFHVLKGMGGAGCVPDLESYGTLISAST 216
           +L DMR+ G KP+      L+   C   ++ EA++VL  M   G  P+   +  LISA  
Sbjct: 411 VLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFC 470

Query: 217 AVRRTAEAVELLKEMVVKVQLTPRQGTIINVVAALRANREIRRAVEIIELLEKESHNVGF 276
              R  EAVE+ +EM  K    P   T  ++++ L    EI+ A+ ++  +  E      
Sbjct: 471 KEHRIPEAVEIFREMPRK-GCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANT 530

Query: 277 ESYELLVEGFLERREYILAGKAVMRMTEKGFIPYIRVRQKVVEGLAGIGEAELASAV 334
            +Y  L+  FL R E   A K V  M  +G          +++GL   GE + A ++
Sbjct: 531 VTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSL 586

The following BLAST results are available for this feature:

BLAST of Sed0016711 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022971046.1	7.6e-159	87.76	pentatricopeptide repeat-containing protein At1g06270 [Cucurbita maxima] >XP_022...	[more]
XP_022947166.1	1.1e-157	86.88	pentatricopeptide repeat-containing protein At1g06270 [Cucurbita moschata] >XP_0...	[more]
XP_023533787.1	1.9e-157	86.88	pentatricopeptide repeat-containing protein At1g06270 [Cucurbita pepo subsp. pep...	[more]
KAG6604878.1	4.2e-157	86.59	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]
XP_022140758.1	1.9e-149	84.21	pentatricopeptide repeat-containing protein At1g06270 [Momordica charantia]	[more]

BLAST of Sed0016711 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LNC0	5.2e-94	57.23	Pentatricopeptide repeat-containing protein At1g06270 OS=Arabidopsis thaliana OX...	[more]
Q9LFF1	1.9e-11	23.99	Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidop...	[more]
Q9SZ52	2.3e-09	25.98	Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidop...	[more]
Q3ECK2	8.8e-09	27.45	Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidop...	[more]
Q9FMF6	2.6e-08	28.81	Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop...	[more]

BLAST of Sed0016711 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I5P5	3.7e-159	87.76	pentatricopeptide repeat-containing protein At1g06270 OS=Cucurbita maxima OX=366...	[more]
A0A6J1G5M7	5.3e-158	86.88	pentatricopeptide repeat-containing protein At1g06270 OS=Cucurbita moschata OX=3...	[more]
A0A6J1CIR0	9.1e-150	84.21	pentatricopeptide repeat-containing protein At1g06270 OS=Momordica charantia OX=...	[more]
A0A5D3D4C7	7.0e-142	79.59	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3C1B6	1.2e-141	79.59	pentatricopeptide repeat-containing protein At1g06270 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Sed0016711 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06270.1	3.7e-95	57.23	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G53700.1	1.4e-12	23.99	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT4G31850.1	1.7e-10	25.98	proton gradient regulation 3	[more]
AT1G62680.1	6.3e-10	27.45	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G64320.1	1.8e-09	28.81	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 250..270
None	No IPR available	PANTHER	PTHR47933:SF18	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 7..342
None	No IPR available	PANTHER	PTHR47933	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL	coord: 7..342
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 156..214 e-value: 0.0039 score: 17.2
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 172..204 e-value: 2.5E-5 score: 22.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 169..203 score: 9.700809
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 118..292 e-value: 6.5E-22 score: 80.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016711.1	Sed0016711.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0005515	protein binding