Sed0016688 (gene) Chayote v1

Overview


Name	Sed0016688
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG12: 34362444 .. 34363063 (+)
RNA-Seq Expression	Sed0016688
Synteny	Sed0016688

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGATGATGTCTCACGGATTTCGAGGAAAAGAAGGCACGGTGCGAACATAAATCCGCCGACAAGGAATGTCGAAGCCAAGATGCCAATGAAGACATCCAAAGCCGAGATGCTAATGAGTAAATCCAAAGCCAAAATGCCAACGTGGAATGTCGAAGTCGGGATGCCAATGAGGAATGTCGAAGTCGGGATGCCAACGAGGGAGATGCCAATGAGGGAAATGCCAACGAGGAATGTCGAAGCCGGGATGCCAACAAGGAATGTCGAAGCCGGGACGCCAACGAGGAAGATGCCAATGAGGAAAGTCAAAGCCGAGATGCTAATAAGGGAAATGCTAATGAGGAATGTCGAAGCCGGGATGCCAACGAGGAAGATGCCAATGAGGAAAGTCAAAGCCGAGATGCTAATGAGGAATGTCGAAGCTGGGATGCCAACGAGGAATGTCGAAGCCGGGATGCCAACGAGGAATGTCGAAGCCGGGACGCCAATGAGGAAGATGCCAATGAGGAAAGTCAAAGCCGAGATGCTAATGAGGAAACTCAAAGCCGAGATGCCAACAACAAAAGTCAAAGCCGAGATGCCAACGACGAAAGTCAAAACCGAGATGCCAAGGAGTGA

mRNA sequence

ATGGTGGATGATGTCTCACGGATTTCGAGGAAAAGAAGGCACGGTGCGAACATAAATCCGCCGACAAGGAATGTCGAAGCCAAGATGCCAATGAAGACATCCAAAGCCGAGATGCTAATGAGTAAATCCAAAGCCAAAATGCCAACTCGGGATGCCAATGAGGAATGTCGAAGTCGGGATGCCAACGAGGGAGATGCCAATGAGGGAAATGCCAACGAGGAATGTCGAAGCCGGGATGCCAACAAGGAATGTCGAAGCCGGGACGCCAACGAGGAAGATGCCAATGAGGAAAGTCAAAGCCGAGATGCTAATAAGGGAAATGCTAATGAGGAATGTCGAAGCCGGGATGCCAACGAGGAAGATGCCAATGAGGAAAGTCAAAGCCGAGATGCTAATGAGGAATGTCGAAGCTGGGATGCCAACGAGGAATGTCGAAGCCGGGATGCCAACGAGGAATGTCGAAGCCGGGACGCCAATGAGGAAGATGCCAATGAGGAAAGTCAAAGCCGAGATGCTAATGAGGAAACTCAAAGCCGAGATGCCAACAACAAAAGTCAAAGCCGAGATGCCAACGACGAAAGTCAAAACCGAGATGCCAAGGAGTGA

Coding sequence (CDS)

ATGGTGGATGATGTCTCACGGATTTCGAGGAAAAGAAGGCACGGTGCGAACATAAATCCGCCGACAAGGAATGTCGAAGCCAAGATGCCAATGAAGACATCCAAAGCCGAGATGCTAATGAGTAAATCCAAAGCCAAAATGCCAACTCGGGATGCCAATGAGGAATGTCGAAGTCGGGATGCCAACGAGGGAGATGCCAATGAGGGAAATGCCAACGAGGAATGTCGAAGCCGGGATGCCAACAAGGAATGTCGAAGCCGGGACGCCAACGAGGAAGATGCCAATGAGGAAAGTCAAAGCCGAGATGCTAATAAGGGAAATGCTAATGAGGAATGTCGAAGCCGGGATGCCAACGAGGAAGATGCCAATGAGGAAAGTCAAAGCCGAGATGCTAATGAGGAATGTCGAAGCTGGGATGCCAACGAGGAATGTCGAAGCCGGGATGCCAACGAGGAATGTCGAAGCCGGGACGCCAATGAGGAAGATGCCAATGAGGAAAGTCAAAGCCGAGATGCTAATGAGGAAACTCAAAGCCGAGATGCCAACAACAAAAGTCAAAGCCGAGATGCCAACGACGAAAGTCAAAACCGAGATGCCAAGGAGTGA

Protein sequence

MVDDVSRISRKRRHGANINPPTRNVEAKMPMKTSKAEMLMSKSKAKMPTRDANEECRSRDANEGDANEGNANEECRSRDANKECRSRDANEEDANEESQSRDANKGNANEECRSRDANEEDANEESQSRDANEECRSWDANEECRSRDANEECRSRDANEEDANEESQSRDANEETQSRDANNKSQSRDANDESQNRDAKE

Homology

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BLAST of Sed0016688 vs. ExPASy TrEMBL
Match: J3LQB5 (Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.3e-06
Identity = 89/216 (41.20%), Postives = 129/216 (59.72%), Query Frame = 0


Query: 1   MVDDVSRISRKRRHGANINPPTRNVEAKMPMKTSKAEMLMSKSKAKMPTRDANEECRSRD 60
           + D  ++  R+RR         R +  +   +T+ A     +      + DA+EE  S D
Sbjct: 35  VADGAAQKRRRRRR--------RGLGGRGRRQTASAAGAGGRGSGGSDSDDADEESDSDD 94

Query: 61  ANEGDANEGNANEECRSRDANKECRSRDANEE----DANEESQSRDANK----GNANEEC 120
           A+E +++  +A+EE  S DA++E  S DA+EE    DA+EES S DA++     +A+EE 
Sbjct: 95  ADE-ESDSDDADEESDSDDADEESDSDDADEESDSDDADEESDSDDADEESDSDDADEES 154

Query: 121 RSRDANEE----DANEESQSRDANEECRSWDANEECRSRDANEECRSRDANEE----DAN 180
            S DA+EE    DA+EES S DA+EE  S DA+EE  S DA+EE  S DA+EE    DA+
Sbjct: 155 DSDDADEESDSDDADEESDSDDADEESDSDDADEESDSDDADEESDSDDADEESDSDDAD 214

Query: 181 EESQSRDANEETQSRDANNKSQSRDANDESQNRDAK 201
           EES S DA+EE+ S DA+ +S S DA++ES + DA+
Sbjct: 215 EESDSDDADEESDSDDADEESDSDDADEESDSDDAQ 241

The following BLAST results are available for this feature:

BLAST of Sed0016688 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0016688 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0016688 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
J3LQB5	4.3e-06	41.20	Uncharacterized protein OS=Oryza brachyantha OX=4533 PE=4 SV=1	[more]

BLAST of Sed0016688 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..201

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016688.1	Sed0016688.1	mRNA