Sed0016588 (gene) Chayote v1

Overview
NameSed0016588
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG04: 5216920 .. 5217108 (-)
RNA-Seq ExpressionSed0016588
SyntenySed0016588
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATTCTCGAATCCACTTGGGTCATATCTCCAAATAATCGCAATCTGGACGATATGTCGTCTACAGCCGTCAATGTCGTTACGAAATTTTGAAAGGGAAAAGAGAGAAGGGGTTTTTTTGGTCAACATCTTGGACTACGTGAACCCGCGTTGGAATCATAAAATGAGACTGGCTTGGGTGAGTTGA

mRNA sequence

ATGAGATTCTCGAATCCACTTGGGTCATATCTCCAAATAATCGCAATCTGGACGATATGTCGTCTACAGCCGTCAATGTCGTTACGAAATTTTGAAAGGGAAAAGAGAGAAGGGGTTTTTTTGGTCAACATCTTGGACTACGTGAACCCGCGTTGGAATCATAAAATGAGACTGGCTTGGGTGAGTTGA

Coding sequence (CDS)

ATGAGATTCTCGAATCCACTTGGGTCATATCTCCAAATAATCGCAATCTGGACGATATGTCGTCTACAGCCGTCAATGTCGTTACGAAATTTTGAAAGGGAAAAGAGAGAAGGGGTTTTTTTGGTCAACATCTTGGACTACGTGAACCCGCGTTGGAATCATAAAATGAGACTGGCTTGGGTGAGTTGA

Protein sequence

MRFSNPLGSYLQIIAIWTICRLQPSMSLRNFEREKREGVFLVNILDYVNPRWNHKMRLAWVS
Homology
[Close]
BLAST of Sed0016588 vs. NCBI nr
Match: KAE8648729.1 (hypothetical protein Csa_009405, partial [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 7.2e-07
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 1  MRFSNPLGSYLQIIAIWTICRLQPSMSLRNFEREKREGVFLVNILDYVNPRWNHK 56
          M FSNPLGS L+I AI  I RLQ S+S   F   +   V LVNILDYV+PRWN +
Sbjct: 1  MGFSNPLGSDLEINAILAISRLQASLSDTRFGEREEGRVLLVNILDYVHPRWNQE 55

[Close]
BLAST of Sed0016588 vs. ExPASy TrEMBL
Match: A0A0A0KSF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603900 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-07
Identity = 32/55 (58.18%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 1  MRFSNPLGSYLQIIAIWTICRLQPSMSLRNFEREKREGVFLVNILDYVNPRWNHK 56
          M FSNPLGS L+I AI  I RLQ S+S   F   +   V LVNILDYV+PRWN +
Sbjct: 1  MGFSNPLGSDLEINAILAISRLQASLSDTRFGEREEGRVLLVNILDYVHPRWNQE 55

The following BLAST results are available for this feature:
BLAST of Sed0016588 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648729.17.2e-0758.18hypothetical protein Csa_009405, partial [Cucumis sativus][more]
BLAST of Sed0016588 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0016588 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KSF73.5e-0758.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G603900 PE=4 SV=1[more]
BLAST of Sed0016588 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0016588.1Sed0016588.1mRNA