Sed0016482 (gene) Chayote v1

Overview


Name	Sed0016482
Type	gene
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal protein L22-2
Location	LG07: 2389657 .. 2391591 (-)
RNA-Seq Expression	Sed0016482
Synteny	Sed0016482

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGGTCTCATGAAAACAAGTTTCCATGCATTTGCGGTAAATTAGAGAAATGACAAAACAAGGTTAGTTTCACAAATTTTAAGTCAAGTAGGCTATTTTTGCAAAATAAAAGACACATCTTCTTCCAGCTTTAAAACAGCAACTCAAAACCCTAGATTCAGCGCCGATCGTTGTACAAATCTGTGCAAGAAATTAGGGCAAACGAGTTGCAGAGAAGAAGCAAAAATGAGCCGTGGAGGAGCATCTGCCCCAAAGGGGAAGAAGAAGGGCGTAACCTTCGTCATCGATTGCGCCAAGCCAGTTGAGGACAAGATCATGGACATCGCTTCACTGGAGAAGTTTCTTCTCGAGAGGATTAAGGTCGGCGGAAAAGCTGGAGCGCTTGGTGACTCCGTTTCTGTCACCCGGGACAAGAACAAGATCACCGTCAACTCCGATAGCAACTTCTCCAAAAGGTACTCGCTGCTTTGTAGTTGTTGATTCTTCTATTGTTTTGGATTTTTGATGGTGGATTCAGTTCTGGGTGAGCTCTGTTCGCGTACTTTTCTATTTGTTTGGGAGTAAGCGTTGGGTTACTGTGGTAATGCTAGAATTGATGCGATGTGTGCGTGGTTGTTCTTTGTTTTCTGTGATTTGTTGGGATTTCGTAGCGTATTTTATTGGATTGAGAGATTGATGAACTTTAGCCAGACATTCCAGCCAAGATTTATTTTAAACGACAAGGGTACTCTTCAAGAAATACTGAAATTGTTCGTTATTTTGGAATAGTTCCTCACTTCTTTGTGCTATCGATTCTAAATTTGTGATTTCGTGTGGATTCTGATTGCTGGGTCATTTTCATTTACTGTTTATGAAGTTCTTAAATCTGCAGGCTCTGGGTATAGCTTTTCTGTGTTGTCTGGTGGATTAACGCTAGATCTCTATTTGTGGAATTTTCTTTGGAATATCCATTGATTTTCTCATCCGTAAGAGGAAGGCTAGTTAAGGATGTTATTCTCACTTGTTTTCCTTTTTTTTTTATGGTTGAACTTAGAATGTAGGGTATAATACATTTCCAAGTTTCTGTTTAGTCTCTATGTTTCAAAATCGAAAACTTTTACCCTTTACATTGCTATAACATTCAATTTTAGTCCCCAAGGGTGGTGCAATGGTTGAAGACTTGGGCTTTGAGGGTATGCTTCCCTCAAGGTCCCAAGTTTGAGACTAACCTGTGACATTATTCTTTCGATGTCTCTGGTGTTTGGCCTACGGATCAGCGTGGTTACCTTGTTTAAAAAATACGTATTTGTTAGTGGCATTATCAAATCTCTACTAAGATGATGACTTGAGTGTTTTTAAATTTCAATGTATTGATGAAATACATATTTTTAAAAGATAATAAGTTATATAAAGCAAACTCAAGACACACAAATGTTTGATTTTAAAATATAGGGACCAAGTAGAATCTAGGGACTAAAATGTTTTAATCATGAGCATATGTGTAAATTTTCAAGAACGAAGTCGTTTCACTTGAGTTATGAGTTATGGATATTTGTTTCTGCCGAAAATAGGCATGTAACTCCACTTTGCTTATTGTTCTCTCTTTTGAATTCCAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTCAGAGATTGGCTTCGGGTTATTGCTTCGAACAAGGACCGCAACGTTTATGAATTGAGATACTTCAACATTGCTGAGAACGAAGGTGAGGAAGAAGAATAAGGTTCAAATCCTATATTTTGGAACCAGAACCATCACTTGTTGTAGGATTAGTTGAAGTGGCCTTACTACTGAAATTATATTCCATACATTATCTTGAAGCTTTCGATATATATCAGCAAGGATTCTTTTGAGTTGTGAGATGATGCAAACACTTGTTTTACTTCTGAAGTTTTATCTATAAATTTTGTTCTAATA

mRNA sequence

AAAGGTCTCATGAAAACAAGTTTCCATGCATTTGCGGTAAATTAGAGAAATGACAAAACAAGGTTAGTTTCACAAATTTTAAGTCAAGTAGGCTATTTTTGCAAAATAAAAGACACATCTTCTTCCAGCTTTAAAACAGCAACTCAAAACCCTAGATTCAGCGCCGATCGTTGTACAAATCTGTGCAAGAAATTAGGGCAAACGAGTTGCAGAGAAGAAGCAAAAATGAGCCGTGGAGGAGCATCTGCCCCAAAGGGGAAGAAGAAGGGCGTAACCTTCGTCATCGATTGCGCCAAGCCAGTTGAGGACAAGATCATGGACATCGCTTCACTGGAGAAGTTTCTTCTCGAGAGGATTAAGGTCGGCGGAAAAGCTGGAGCGCTTGGTGACTCCGTTTCTGTCACCCGGGACAAGAACAAGATCACCGTCAACTCCGATAGCAACTTCTCCAAAAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTCAGAGATTGGCTTCGGGTTATTGCTTCGAACAAGGACCGCAACGTTTATGAATTGAGATACTTCAACATTGCTGAGAACGAAGGTGAGGAAGAAGAATAAGGTTCAAATCCTATATTTTGGAACCAGAACCATCACTTGTTGTAGGATTAGTTGAAGTGGCCTTACTACTGAAATTATATTCCATACATTATCTTGAAGCTTTCGATATATATCAGCAAGGATTCTTTTGAGTTGTGAGATGATGCAAACACTTGTTTTACTTCTGAAGTTTTATCTATAAATTTTGTTCTAATA

Coding sequence (CDS)

ATGAGCCGTGGAGGAGCATCTGCCCCAAAGGGGAAGAAGAAGGGCGTAACCTTCGTCATCGATTGCGCCAAGCCAGTTGAGGACAAGATCATGGACATCGCTTCACTGGAGAAGTTTCTTCTCGAGAGGATTAAGGTCGGCGGAAAAGCTGGAGCGCTTGGTGACTCCGTTTCTGTCACCCGGGACAAGAACAAGATCACCGTCAACTCCGATAGCAACTTCTCCAAAAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTCAGAGATTGGCTTCGGGTTATTGCTTCGAACAAGGACCGCAACGTTTATGAATTGAGATACTTCAACATTGCTGAGAACGAAGGTGAGGAAGAAGAATAA

Protein sequence

MSRGGASAPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEEE

Homology

[Close]

BLAST of Sed0016482 vs. NCBI nr
Match: XP_004136027.1 (60S ribosomal protein L22-2 [Cucumis sativus] >XP_008451565.1 PREDICTED: 60S ribosomal protein L22-2 [Cucumis melo] >XP_022155135.1 60S ribosomal protein L22-2 [Momordica charantia] >XP_038896853.1 60S ribosomal protein L22-2-like [Benincasa hispida] >KAA0067992.1 60S ribosomal protein L22-2-like [Cucumis melo var. makuwa] >KGN44943.1 hypothetical protein Csa_015937 [Cucumis sativus] >TYK18135.1 60S ribosomal protein L22-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56
Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSRGGASA--PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60
           MSRG A++  PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSV+
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEEE 125
           EGEEE+
Sbjct: 121 EGEEED 126

[Close]

BLAST of Sed0016482 vs. NCBI nr
Match: XP_023548993.1 (60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo] >KAG6575823.1 60S ribosomal protein L22-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-56
Identity = 118/126 (93.65%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSRGGASA--PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60
           MSRG A++  PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+V+
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEEE 125
           EGEEE+
Sbjct: 121 EGEEED 126

[Close]

BLAST of Sed0016482 vs. NCBI nr
Match: XP_022953729.1 (60S ribosomal protein L22-2-like [Cucurbita moschata])

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-56
Identity = 118/126 (93.65%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSRGGASA--PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60
           MSRG A++  PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+V+
Sbjct: 1   MSRGAAASGCPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEEE 125
           EGEEE+
Sbjct: 121 EGEEED 126

[Close]

BLAST of Sed0016482 vs. NCBI nr
Match: XP_004135607.1 (60S ribosomal protein L22-2 [Cucumis sativus] >XP_008450627.1 PREDICTED: 60S ribosomal protein L22-2 [Cucumis melo] >KAA0050904.1 60S ribosomal protein L22-2 [Cucumis melo var. makuwa] >KAE8653365.1 hypothetical protein Csa_007558 [Cucumis sativus] >TYK10255.1 60S ribosomal protein L22-2 [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 4.4e-56
Identity = 115/124 (92.74%), Postives = 121/124 (97.58%), Query Frame = 0


Query: 1   MSRGGASAPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGA+ PKGKKKGVTF IDC+KPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT
Sbjct: 1   MSRGGAAGPKGKKKGVTFTIDCSKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60

Query: 61  RDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEG 120
           R+K+KITV SDSNFSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRNVYELRYFNIAENEG
Sbjct: 61  REKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEG 120

Query: 121 EEEE 125
           EEE+
Sbjct: 121 EEED 124

[Close]

BLAST of Sed0016482 vs. NCBI nr
Match: XP_022991268.1 (60S ribosomal protein L22-2-like [Cucurbita maxima])

HSP 1 Score: 227.3 bits (578), Expect = 7.5e-56
Identity = 117/126 (92.86%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSRGGASA--PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60
           MSRG A++  PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+V+
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYEL+YFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELKYFNIAEN 120

Query: 121 EGEEEE 125
           EGEEE+
Sbjct: 121 EGEEED 126

[Close]

BLAST of Sed0016482 vs. ExPASy Swiss-Prot
Match: Q9M9W1 (60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 9.5e-54
Identity = 104/124 (83.87%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MSRGGASAPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGA+  KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSV++T
Sbjct: 1   MSRGGAAVAKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTIT 60

Query: 61  RDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEG 120
           R+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAENEG
Sbjct: 61  REKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEG 120

Query: 121 EEEE 125
           EEE+
Sbjct: 121 EEED 124

[Close]

BLAST of Sed0016482 vs. ExPASy Swiss-Prot
Match: Q9FE58 (60S ribosomal protein L22-3 OS=Arabidopsis thaliana OX=3702 GN=RPL22C PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.6e-53
Identity = 104/124 (83.87%), Postives = 116/124 (93.55%), Query Frame = 0


Query: 1   MSRGGASAPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRG A+A KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVS+T
Sbjct: 1   MSRGNAAAAKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSIT 60

Query: 61  RDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEG 120
           R+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAENE 
Sbjct: 61  REKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEA 120

Query: 121 EEEE 125
           EEE+
Sbjct: 121 EEED 124

[Close]

BLAST of Sed0016482 vs. ExPASy Swiss-Prot
Match: Q9SRX7 (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana OX=3702 GN=RPL22A PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.4e-41
Identity = 89/126 (70.63%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 1   MSRGGA--SAPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60
           M+R GA  S    KKKGV+FVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG+SVS
Sbjct: 1   MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRVIASNKD+NVYE+RYF I + 
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDE 120

Query: 121 EGEEEE 125
               EE
Sbjct: 121 VASYEE 126

[Close]

BLAST of Sed0016482 vs. ExPASy Swiss-Prot
Match: Q90YU6 (60S ribosomal protein L22 OS=Ictalurus punctatus OX=7998 GN=rpl22 PE=2 SV=3)

HSP 1 Score: 135.2 bits (339), Expect = 5.1e-31
Identity = 74/116 (63.79%), Postives = 89/116 (76.72%), Query Frame = 0


Query: 10  KGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDS-VSVTRDKNKITV 69
           K KK+ + F +DC  PVED IMD A+ E+FL ERIKV GKAG LG   VS+ R K+KITV
Sbjct: 13  KKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVSIERSKSKITV 72

Query: 70  NSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEEE 125
            SD  FSKRYLKYLTKKYLKK+N+RDWLRV+A+ K+   YELRYF I ++E EEE+
Sbjct: 73  TSDIPFSKRYLKYLTKKYLKKNNLRDWLRVVANTKES--YELRYFQINQDEEEEED 126

[Close]

BLAST of Sed0016482 vs. ExPASy Swiss-Prot
Match: Q98TF8 (60S ribosomal protein L22 OS=Gallus gallus OX=9031 GN=RPL22 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 6.6e-31
Identity = 74/125 (59.20%), Postives = 93/125 (74.40%), Query Frame = 0


Query: 1   MSRGGASAPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDS-VSV 60
           + +  A   K KK+ + F +DC  PVED IMD A+ E+FL ERIKV GKAG LG   V++
Sbjct: 4   VKKPAAKGGKKKKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTI 63

Query: 61  TRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENE 120
            R K+KITV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K+   YELRYF I ++E
Sbjct: 64  ERSKSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDE 123

Query: 121 GEEEE 125
            EEEE
Sbjct: 124 EEEEE 126

[Close]

BLAST of Sed0016482 vs. ExPASy TrEMBL
Match: A0A5D3D2W6 (60S ribosomal protein L22-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00650 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.3e-57
Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSRGGASA--PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60
           MSRG A++  PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSV+
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEEE 125
           EGEEE+
Sbjct: 121 EGEEED 126

[Close]

BLAST of Sed0016482 vs. ExPASy TrEMBL
Match: A0A0A0K637 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G397560 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.3e-57
Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSRGGASA--PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60
           MSRG A++  PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSV+
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEEE 125
           EGEEE+
Sbjct: 121 EGEEED 126

[Close]

BLAST of Sed0016482 vs. ExPASy TrEMBL
Match: A0A6J1DLK6 (60S ribosomal protein L22-2 OS=Momordica charantia OX=3673 GN=LOC111022271 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.3e-57
Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSRGGASA--PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60
           MSRG A++  PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSV+
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEEE 125
           EGEEE+
Sbjct: 121 EGEEED 126

[Close]

BLAST of Sed0016482 vs. ExPASy TrEMBL
Match: A0A1S3BRQ9 (60S ribosomal protein L22-2 OS=Cucumis melo OX=3656 GN=LOC103492808 PE=3 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.3e-57
Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSRGGASA--PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60
           MSRG A++  PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSV+
Sbjct: 1   MSRGAAASGGPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEEE 125
           EGEEE+
Sbjct: 121 EGEEED 126

[Close]

BLAST of Sed0016482 vs. ExPASy TrEMBL
Match: A0A6J1GQI3 (60S ribosomal protein L22-2-like OS=Cucurbita moschata OX=3662 GN=LOC111456174 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.6e-56
Identity = 118/126 (93.65%), Postives = 123/126 (97.62%), Query Frame = 0


Query: 1   MSRGGASA--PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60
           MSRG A++  PKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGD+V+
Sbjct: 1   MSRGAAASGCPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDAVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN
Sbjct: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120

Query: 121 EGEEEE 125
           EGEEE+
Sbjct: 121 EGEEED 126

[Close]

BLAST of Sed0016482 vs. TAIR 10
Match: AT3G05560.1 (Ribosomal L22e protein family )

HSP 1 Score: 210.7 bits (535), Expect = 6.8e-55
Identity = 104/124 (83.87%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MSRGGASAPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGA+  KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSV++T
Sbjct: 1   MSRGGAAVAKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTIT 60

Query: 61  RDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEG 120
           R+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAENEG
Sbjct: 61  REKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEG 120

Query: 121 EEEE 125
           EEE+
Sbjct: 121 EEED 124

[Close]

BLAST of Sed0016482 vs. TAIR 10
Match: AT3G05560.2 (Ribosomal L22e protein family )

HSP 1 Score: 210.7 bits (535), Expect = 6.8e-55
Identity = 104/124 (83.87%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MSRGGASAPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGA+  KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSV++T
Sbjct: 1   MSRGGAAVAKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTIT 60

Query: 61  RDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEG 120
           R+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAENEG
Sbjct: 61  REKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEG 120

Query: 121 EEEE 125
           EEE+
Sbjct: 121 EEED 124

[Close]

BLAST of Sed0016482 vs. TAIR 10
Match: AT3G05560.3 (Ribosomal L22e protein family )

HSP 1 Score: 210.7 bits (535), Expect = 6.8e-55
Identity = 104/124 (83.87%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 1   MSRGGASAPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRGGA+  KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSV++T
Sbjct: 1   MSRGGAAVAKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTIT 60

Query: 61  RDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEG 120
           R+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAENEG
Sbjct: 61  REKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEG 120

Query: 121 EEEE 125
           EEE+
Sbjct: 121 EEED 124

[Close]

BLAST of Sed0016482 vs. TAIR 10
Match: AT5G27770.1 (Ribosomal L22e protein family )

HSP 1 Score: 208.8 bits (530), Expect = 2.6e-54
Identity = 104/124 (83.87%), Postives = 116/124 (93.55%), Query Frame = 0


Query: 1   MSRGGASAPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVSVT 60
           MSRG A+A KGKKKGV+F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVS+T
Sbjct: 1   MSRGNAAAAKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSIT 60

Query: 61  RDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEG 120
           R+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAENE 
Sbjct: 61  REKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEA 120

Query: 121 EEEE 125
           EEE+
Sbjct: 121 EEED 124

[Close]

BLAST of Sed0016482 vs. TAIR 10
Match: AT1G02830.1 (Ribosomal L22e protein family )

HSP 1 Score: 168.3 bits (425), Expect = 3.9e-42
Identity = 89/126 (70.63%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 1   MSRGGA--SAPKGKKKGVTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVS 60
           M+R GA  S    KKKGV+FVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG+SVS
Sbjct: 1   MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRVIASNKD+NVYE+RYF I + 
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDE 120

Query: 121 EGEEEE 125
               EE
Sbjct: 121 VASYEE 126

The following BLAST results are available for this feature:

BLAST of Sed0016482 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136027.1	1.5e-56	94.44	60S ribosomal protein L22-2 [Cucumis sativus] >XP_008451565.1 PREDICTED: 60S rib...	[more]
XP_023548993.1	3.4e-56	93.65	60S ribosomal protein L22-2-like [Cucurbita pepo subsp. pepo] >KAG6575823.1 60S ...	[more]
XP_022953729.1	3.4e-56	93.65	60S ribosomal protein L22-2-like [Cucurbita moschata]	[more]
XP_004135607.1	4.4e-56	92.74	60S ribosomal protein L22-2 [Cucumis sativus] >XP_008450627.1 PREDICTED: 60S rib...	[more]
XP_022991268.1	7.5e-56	92.86	60S ribosomal protein L22-2-like [Cucurbita maxima]	[more]

BLAST of Sed0016482 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9W1	9.5e-54	83.87	60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1	[more]
Q9FE58	3.6e-53	83.87	60S ribosomal protein L22-3 OS=Arabidopsis thaliana OX=3702 GN=RPL22C PE=2 SV=1	[more]
Q9SRX7	5.4e-41	70.63	Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana OX=3702 GN=RPL22A P...	[more]
Q90YU6	5.1e-31	63.79	60S ribosomal protein L22 OS=Ictalurus punctatus OX=7998 GN=rpl22 PE=2 SV=3	[more]
Q98TF8	6.6e-31	59.20	60S ribosomal protein L22 OS=Gallus gallus OX=9031 GN=RPL22 PE=2 SV=1	[more]

BLAST of Sed0016482 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D2W6	7.3e-57	94.44	60S ribosomal protein L22-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0K637	7.3e-57	94.44	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G397560 PE=3 SV=1	[more]
A0A6J1DLK6	7.3e-57	94.44	60S ribosomal protein L22-2 OS=Momordica charantia OX=3673 GN=LOC111022271 PE=3 ...	[more]
A0A1S3BRQ9	7.3e-57	94.44	60S ribosomal protein L22-2 OS=Cucumis melo OX=3656 GN=LOC103492808 PE=3 SV=1	[more]
A0A6J1GQI3	1.6e-56	93.65	60S ribosomal protein L22-2-like OS=Cucurbita moschata OX=3662 GN=LOC111456174 P...	[more]

BLAST of Sed0016482 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05560.1	6.8e-55	83.87	Ribosomal L22e protein family	[more]
AT3G05560.2	6.8e-55	83.87	Ribosomal L22e protein family	[more]
AT3G05560.3	6.8e-55	83.87	Ribosomal L22e protein family	[more]
AT5G27770.1	2.6e-54	83.87	Ribosomal L22e protein family	[more]
AT1G02830.1	3.9e-42	70.63	Ribosomal L22e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002671	Ribosomal protein L22e	PFAM	PF01776	Ribosomal_L22e	coord: 14..122 e-value: 4.1E-46 score: 155.8
IPR002671	Ribosomal protein L22e	PANTHER	PTHR10064	60S RIBOSOMAL PROTEIN L22	coord: 1..124
IPR038526	Ribosomal protein L22e superfamily	GENE3D	3.30.1360.210		coord: 5..124 e-value: 1.2E-56 score: 191.8
None	No IPR available	PANTHER	PTHR10064:SF16	60S RIBOSOMAL PROTEIN L22-2	coord: 1..124

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016482.1	Sed0016482.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome