Sed0016356 (gene) Chayote v1

Overview


Name	Sed0016356
Type	gene
Organism	Sechium edule (Chayote v1)
Description	LIM domain-containing protein PLIM2c-like
Location	LG12: 1068833 .. 1070437 (-)
RNA-Seq Expression	Sed0016356
Synteny	Sed0016356

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTCACTGGAACATTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGCTTACCCTTGAAGGGAATCCTTACCACAAGTCTTGCTTCAAATGTAGCCATTGCAAAGGCACCCTTTCGGTACGTCTCTCGATCGAGTTTCTTTTGTTTCGTTCGTAACATCTTTTGATTGCTGAGATGGATTTGACCCGATCGAATCTTTTTACGACAGATGAGTAGCTACTCATGGATGGATGGTGTCCTGTATTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAAACTTGTAATGTCCCCTAGCTATTTTCTCTTGATGTTTGTCTTCTTTTGTTTCTTCCCATCTTTCTAACATTCTCTCATTTTCATTAAATTGAATGACAGCCAAGTCTGGTGAGAAGCAAAATGAATTGGTATGCTCTAATTATTTTCATCGATTCTAATACTCGTTCAATGACGATATGATTTAGATTTTTTTATGACTGGAAATTGGAGCTTCCCTCCCATATTCCTAGAGGCACTCGCGTCCACCTCGCGTCCTCCCATTTTACAATTAAACTCAACTCGTGAATCTTGAACTTAAGACCTCCAAAGGAGCATACCTTAGACACCCCAGGCCTCAACCAACAAGGCTACCCTTTGGGGACAATATGATTTATATCTAGTAGTGCTTTAACATGATATCAAAACAGAAGATCTTCCTCATTCATATTATAGTTTACATATATGGTCTCGTTTCGTATAATCTCGAATGGAATTTCAATAACATTTTTTTCGTTGGTACCTTTCGATGTTATTAGCAGTCGAGGGCTCCTAGCAAGATCTCCACCATGTTCTCTGGAACTCAGGACAAATGCGCGACCTGCTCGAAAACGGTTTATCCATTGGAGAAGGTCTCTCTGGTTCTTCTTTTTTTTTTTTTTAGGTTACAAAATGTTTCTAGATTATATAATTTTTTGCTTTGGTTTATAAAAAGGTTGCTCTTGAGGGGGAATGCTACCACAAGAGCTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACACTCTAATTATGCTGCTCTTGATGGAGTCTTGTACTGCAAGCCCCATTTTTCTCAACTCTTCATGGTCAAAGGCAACTACAGCCATGTCCTTGAAGCTGCTGCAAACAAGAAAGCGACCACGCCGCCTCCCGAACAAGCAGAAAATGATGAGGCCGCCACCGATGCTGATCAGCCGAAGGACGAGGAAAAGGCCGAGGTAGAGGAAACTTAAAAAATGGCTTCATTCTGCATTCATCAACACACCATATATCTATATCTATATATATCTTGGGAAGCCTTGTCTTTCTTATAATTTTGTTGTTTGAGTTACTTTTGTTTTTTGCTTTCAATTTCATTTGTAACAAGTGCATTACCATTTTGAGTTTTTGTTTTAAGGCAAAGTCATATCATTATATTTATTTGCCATCAAAGTATGGAAAACAATGTACCATAGTTTTCTGCATGTGGGGGGAGAAGTTGTAATAAAGCATATATTGCTATACTTTCCAATCACTATGAACACAATTTTCCTTTTTCTCCAA

mRNA sequence

ATGTCATTCACTGGAACATTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGCTTACCCTTGAAGGGAATCCTTACCACAAGTCTTGCTTCAAATGTAGCCATTGCAAAGGCACCCTTTCGATGAGTAGCTACTCATGGATGGATGGTGTCCTGTATTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAAACTTCCAAGTCTGGTGAGAAGCAAAATGAATTGTCGAGGGCTCCTAGCAAGATCTCCACCATGTTCTCTGGAACTCAGGACAAATGCGCGACCTGCTCGAAAACGGTTTATCCATTGGAGAAGGTTGCTCTTGAGGGGGAATGCTACCACAAGAGCTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACACTCTAATTATGCTGCTCTTGATGGAGTCTTGTACTGCAAGCCCCATTTTTCTCAACTCTTCATGGTCAAAGGCAACTACAGCCATGTCCTTGAAGCTGCTGCAAACAAGAAAGCGACCACGCCGCCTCCCGAACAAGCAGAAAATGATGAGGCCGCCACCGATGCTGATCAGCCGAAGGACGAGGAAAAGGCCGAGGTAGAGGAAACTTAAAAAATGGCTTCATTCTGCATTCATCAACACACCATATATCTATATCTATATATATCTTGGGAAGCCTTGTCTTTCTTATAATTTTGTTGTTTGAGTTACTTTTGTTTTTTGCTTTCAATTTCATTTGTAACAAGTGCATTACCATTTTGAGTTTTTGTTTTAAGGCAAAGTCATATCATTATATTTATTTGCCATCAAAGTATGGAAAACAATGTACCATAGTTTTCTGCATGTGGGGGGAGAAGTTGTAATAAAGCATATATTGCTATACTTTCCAATCACTATGAACACAATTTTCCTTTTTCTCCAA

Coding sequence (CDS)

ATGTCATTCACTGGAACATTGGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGCTTACCCTTGAAGGGAATCCTTACCACAAGTCTTGCTTCAAATGTAGCCATTGCAAAGGCACCCTTTCGATGAGTAGCTACTCATGGATGGATGGTGTCCTGTATTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAAACTTCCAAGTCTGGTGAGAAGCAAAATGAATTGTCGAGGGCTCCTAGCAAGATCTCCACCATGTTCTCTGGAACTCAGGACAAATGCGCGACCTGCTCGAAAACGGTTTATCCATTGGAGAAGGTTGCTCTTGAGGGGGAATGCTACCACAAGAGCTGCTTTAGATGTGCTCATGGTGGATGCCATTTGACACACTCTAATTATGCTGCTCTTGATGGAGTCTTGTACTGCAAGCCCCATTTTTCTCAACTCTTCATGGTCAAAGGCAACTACAGCCATGTCCTTGAAGCTGCTGCAAACAAGAAAGCGACCACGCCGCCTCCCGAACAAGCAGAAAATGATGAGGCCGCCACCGATGCTGATCAGCCGAAGGACGAGGAAAAGGCCGAGGTAGAGGAAACTTAA

Protein sequence

MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVALEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKKATTPPPEQAENDEAATDADQPKDEEKAEVEET

Homology

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BLAST of Sed0016356 vs. NCBI nr
Match: XP_008438078.1 (PREDICTED: LIM domain-containing protein PLIM2c-like [Cucumis melo])

HSP 1 Score: 376.7 bits (966), Expect = 1.3e-100
Identity = 178/207 (85.99%), Postives = 194/207 (93.72%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVA 120
           HFEQLFKESGNFSKNFQ +K  EKQN+LSRAPSK+S+MFSGTQDKCA C+KTVYPLEKV 
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120

Query: 121 LEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKKA 180
           LEGECYHK+CFRCAHGGCHLTHS+YAALDGVLYCK HF+QLFM+KGNY+HVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEQAENDEAATDADQPKDEEKAE 208
           TTPPPE AE +E AT+A QP+ +E  E
Sbjct: 181 TTPPPEPAEEEEGATEA-QPQADEAVE 206

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BLAST of Sed0016356 vs. NCBI nr
Match: XP_011650764.2 (LIM domain-containing protein PLIM2b isoform X2 [Cucumis sativus])

HSP 1 Score: 376.3 bits (965), Expect = 1.7e-100
Identity = 180/211 (85.31%), Postives = 194/211 (91.94%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVA 120
           HFEQLFKESGNFSKNFQ +K  EKQN+LSRAPSK+S+MFSGTQDKCA CSKTVYPLEKV 
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKKA 180
           LEGECYHK+CFRCAHGGCHLTHS+YAALDGVLYCK HF+QLFM+KGNY+HVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEQAENDEAATDADQPKDEEKAEVEET 212
            TPPPE AE +E AT+A    DE  A VE+T
Sbjct: 181 PTPPPEPAEEEEGATEAQPQADE--APVEQT 209

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BLAST of Sed0016356 vs. NCBI nr
Match: XP_022975113.1 (LIM domain-containing protein PLIM2c-like [Cucurbita maxima])

HSP 1 Score: 373.6 bits (958), Expect = 1.1e-99
Identity = 178/206 (86.41%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVA 120
           HFEQLFKESGNFSKNFQTSK  EKQN+ SRAP+K S MFSGTQDKCA CSKTVYPLEKV 
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDSSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKKA 180
           LEGECYHK+CFRCAHGGCHLTHS+YAALDGVLYCK HF+QLFM+KGNY+HVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEQAENDEAATDADQPKDEEKA 207
           TTPPPE AE+DE      QP+ EE A
Sbjct: 181 TTPPPEAAEDDEGGA---QPQAEEDA 203

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BLAST of Sed0016356 vs. NCBI nr
Match: KAG6597154.1 (LIM domain-containing protein PLIM2c, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 373.2 bits (957), Expect = 1.4e-99
Identity = 178/206 (86.41%), Postives = 190/206 (92.23%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVA 120
           HFEQLFKESGNFSKNFQTSK  EKQN+ SRAP+K S MFSGTQDKCA CSKTVYPLEKV 
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKKA 180
           LEGECYHK+CFRCAHGGCHLTHS+YAALDGVLYCK HF+QLFM+KGNY+HVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEQAENDEAATDADQPKDEEKA 207
           TTPPPE AE+DE      QP+ EE+A
Sbjct: 181 TTPPPEAAEDDEGGA---QPQAEEEA 203

[Close]

BLAST of Sed0016356 vs. NCBI nr
Match: XP_022934048.1 (LIM domain-containing protein PLIM2c-like [Cucurbita moschata] >XP_023540704.1 LIM domain-containing protein PLIM2c-like [Cucurbita pepo subsp. pepo] >KAG7028624.1 LIM domain-containing protein PLIM2c [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 372.5 bits (955), Expect = 2.5e-99
Identity = 178/206 (86.41%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVA 120
           HFEQLFKESGNFSKNFQTSK  EKQN+ SRAP+K S MFSGTQDKCA CSKTVYPLEKV 
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKKA 180
           LEGECYHK+CFRCAHGGCHLTHS+YAALDGVLYCK HF+QLFM+KGNY+HVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEQAENDEAATDADQPKDEEKA 207
           TTPPPE AE+DE      QP+ EE A
Sbjct: 181 TTPPPEAAEDDEGGA---QPQAEEDA 203

[Close]

BLAST of Sed0016356 vs. ExPASy Swiss-Prot
Match: Q1ECF5 (LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 7.0e-81
Identity = 139/193 (72.02%), Postives = 165/193 (85.49%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKC  CDKTVYVVD+L++EG PYHKSCF+C+HCKGTL MS+YS MDGVLYCKT
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVA 120
           HFEQLFKESGNFSKNFQ  K+  ++ EL+R PSKIS++F GTQDKCA C KTVYPLEK+ 
Sbjct: 61  HFEQLFKESGNFSKNFQPGKT--EKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQ 120

Query: 121 LEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKK- 180
           +EGEC+HK+CFRCAHGGC LTHS+YA+LD VLYC+ HF+QLFM KGNY+HVL+AA +++ 
Sbjct: 121 MEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRT 180

Query: 181 --ATTPPPEQAEN 191
               T PPE  E+
Sbjct: 181 ASGNTLPPEPTED 191

[Close]

BLAST of Sed0016356 vs. ExPASy Swiss-Prot
Match: Q500W4 (LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C PE=1 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 9.1e-81
Identity = 142/206 (68.93%), Postives = 170/206 (82.52%), Query Frame = 0


Query: 2   SFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTH 61
           +FTGT DKCKACDKTVYV+DL+TLEG PYHKSCF+CSHC GTL + +YS MDGVLYCKTH
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 62  FEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVAL 121
           FEQLFKESGNFSKNFQT+   EK N+ ++AP+++S+ FSGTQDKCA C KTVYPLEK+ +
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122

Query: 122 EGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKKAT 181
           EGE YHK+CFRCAH GC LTHS+YAALDGVLYCK HFSQLF+ KGNY+HVL+AAAN + +
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHRRS 182

Query: 182 TPPPEQAENDEAATDADQPKDEEKAE 208
           T   ++ E  E   D   P +EE ++
Sbjct: 183 TAEEDKTEPKE---DEANPTEEETSD 205

[Close]

BLAST of Sed0016356 vs. ExPASy Swiss-Prot
Match: O80839 (LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A PE=1 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 8.5e-79
Identity = 140/213 (65.73%), Postives = 171/213 (80.28%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYV+DLLTLEGN YHKSCF+C+HCKGTL +S+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVA 120
           HFEQLFKESGN+SKNFQ  K+ +  + L+R PSK+S+ FSGTQDKCATC KTVYPLEKV 
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVT 120

Query: 121 LEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKK- 180
           +EGE YHK+CFRC H GC LTHS+YA+L+GVLYCK HF+QLF+ KG+Y+HV +AAAN + 
Sbjct: 121 MEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANHRR 180

Query: 181 -----ATTPPPEQAENDEAATDADQPKDEEKAE 208
                  +PP +  + D+ A+  +  +D+   E
Sbjct: 181 SASSGGASPPSDDHKPDDTASIPEAKEDDAAPE 213

[Close]

BLAST of Sed0016356 vs. ExPASy Swiss-Prot
Match: Q7F9R9 (LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN=PLIM2B PE=1 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.9e-71
Identity = 132/202 (65.35%), Postives = 154/202 (76.24%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT DKC ACDKTV+ +DLLT +G PYHK+CFKCSHCKG LSM SYS MDGVLYCKT
Sbjct: 1   MSFTGTQDKCTACDKTVHFIDLLTADGVPYHKTCFKCSHCKGILSMCSYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTS-KSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKV 120
           HFEQLFKE+G+FSK F    +S +K  EL+RAPSKI + FSGTQDKCA C KTVYPLEK+
Sbjct: 61  HFEQLFKETGSFSKKFAPGCRSTDK--ELARAPSKICSAFSGTQDKCAACQKTVYPLEKL 120

Query: 121 ALEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVL------- 180
            LEGE YHKSCF+C+HGGC LT S+YAAL+GVLYCK HF QLFM KG+Y+H+        
Sbjct: 121 TLEGESYHKSCFKCSHGGCILTTSSYAALNGVLYCKIHFGQLFMEKGSYNHMKKKSESQE 180

Query: 181 ---EAAANKKATTPPPEQAEND 192
              E    ++   PPP++   D
Sbjct: 181 VLPEVVPEEQPAPPPPDENRED 200

[Close]

BLAST of Sed0016356 vs. ExPASy Swiss-Prot
Match: O04193 (LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A PE=1 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.6e-69
Identity = 116/184 (63.04%), Postives = 154/184 (83.70%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KC+AC+KTVY V+LL+ +G  YHK+CFKCSHCK  L +S+YS M+GV+YC+ 
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKESGNFSKNFQTSK---SGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLE 120
           HFEQLFKESG+FSKNFQ+     + +   EL+R PS+++ MFSGTQDKCATC+KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVALEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAAN 180
           KV +E +CYHKSCF+C+HGGC ++ SNYAAL+G+LYCK HF+QLF  KG+Y+H++++A+ 
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KKAT 182
           K+AT
Sbjct: 181 KRAT 184

[Close]

BLAST of Sed0016356 vs. ExPASy TrEMBL
Match: A0A1S3AW36 (LIM domain-containing protein PLIM2c-like OS=Cucumis melo OX=3656 GN=LOC103483293 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 6.3e-101
Identity = 178/207 (85.99%), Postives = 194/207 (93.72%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVA 120
           HFEQLFKESGNFSKNFQ +K  EKQN+LSRAPSK+S+MFSGTQDKCA C+KTVYPLEKV 
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACTKTVYPLEKVT 120

Query: 121 LEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKKA 180
           LEGECYHK+CFRCAHGGCHLTHS+YAALDGVLYCK HF+QLFM+KGNY+HVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEQAENDEAATDADQPKDEEKAE 208
           TTPPPE AE +E AT+A QP+ +E  E
Sbjct: 181 TTPPPEPAEEEEGATEA-QPQADEAVE 206

[Close]

BLAST of Sed0016356 vs. ExPASy TrEMBL
Match: A0A0A0L4A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122620 PE=4 SV=1)

HSP 1 Score: 374.0 bits (959), Expect = 4.1e-100
Identity = 179/211 (84.83%), Postives = 193/211 (91.47%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCLKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVA 120
           HFEQLFKESGNFSKNFQ +K  EKQN+LSRAPSK+S+MFSGTQDKCA CSKTVYPLEKV 
Sbjct: 61  HFEQLFKESGNFSKNFQNAKPSEKQNDLSRAPSKLSSMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKKA 180
           LEGECYHK+CFRCAHGGCHLTHS+YAALDGVLYCK HF+QLFM+KGNY+HVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEQAENDEAATDADQPKDEEKAEVEET 212
            TPPPE AE +E AT+A    DE  A VE+T
Sbjct: 181 PTPPPEPAEEEEGATEAQPQADE--APVEQT 209

[Close]

BLAST of Sed0016356 vs. ExPASy TrEMBL
Match: A0A6J1IIB7 (LIM domain-containing protein PLIM2c-like OS=Cucurbita maxima OX=3661 GN=LOC111474084 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.3e-100
Identity = 178/206 (86.41%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVA 120
           HFEQLFKESGNFSKNFQTSK  EKQN+ SRAP+K S MFSGTQDKCA CSKTVYPLEKV 
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDSSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKKA 180
           LEGECYHK+CFRCAHGGCHLTHS+YAALDGVLYCK HF+QLFM+KGNY+HVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEQAENDEAATDADQPKDEEKA 207
           TTPPPE AE+DE      QP+ EE A
Sbjct: 181 TTPPPEAAEDDEGGA---QPQAEEDA 203

[Close]

BLAST of Sed0016356 vs. ExPASy TrEMBL
Match: A0A6J1F6K2 (LIM domain-containing protein PLIM2c-like OS=Cucurbita moschata OX=3662 GN=LOC111441332 PE=4 SV=1)

HSP 1 Score: 372.5 bits (955), Expect = 1.2e-99
Identity = 178/206 (86.41%), Postives = 189/206 (91.75%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVA 120
           HFEQLFKESGNFSKNFQTSK  EKQN+ SRAP+K S MFSGTQDKCA CSKTVYPLEKV 
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACSKTVYPLEKVT 120

Query: 121 LEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKKA 180
           LEGECYHK+CFRCAHGGCHLTHS+YAALDGVLYCK HF+QLFM+KGNY+HVLEAAANKKA
Sbjct: 121 LEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA 180

Query: 181 TTPPPEQAENDEAATDADQPKDEEKA 207
           TTPPPE AE+DE      QP+ EE A
Sbjct: 181 TTPPPEAAEDDEGGA---QPQAEEDA 203

[Close]

BLAST of Sed0016356 vs. ExPASy TrEMBL
Match: A0A6J1IRA7 (LIM domain-containing protein PLIM2c-like OS=Cucurbita maxima OX=3661 GN=LOC111479786 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 5.0e-98
Identity = 175/208 (84.13%), Postives = 191/208 (91.83%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYVV+LL+LEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNEL-SRAPSKISTMFSGTQDKCATCSKTVYPLEKV 120
           HFEQLFKESGNFSKNFQTSK  EKQN++ SRAPSK+S+MFSGTQDKC+ CSKTVYPLEKV
Sbjct: 61  HFEQLFKESGNFSKNFQTSKPSEKQNDMQSRAPSKLSSMFSGTQDKCSACSKTVYPLEKV 120

Query: 121 ALEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKK 180
            LEGECYHK+CFRCAHGGC+LTHS+YAALDGVLYCK HF+QLFM+KGNY+HVLEAAANKK
Sbjct: 121 TLEGECYHKTCFRCAHGGCNLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK 180

Query: 181 ATTPPPEQAENDEAATDADQPKDEEKAE 208
           ATTPPPE AE DEA  +A+   +E   E
Sbjct: 181 ATTPPPESAEEDEAKGNAEAQSEEGAVE 208

[Close]

BLAST of Sed0016356 vs. TAIR 10
Match: AT1G01780.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 301.6 bits (771), Expect = 5.0e-82
Identity = 139/193 (72.02%), Postives = 165/193 (85.49%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKC  CDKTVYVVD+L++EG PYHKSCF+C+HCKGTL MS+YS MDGVLYCKT
Sbjct: 1   MSFTGTLDKCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKT 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVA 120
           HFEQLFKESGNFSKNFQ  K+  ++ EL+R PSKIS++F GTQDKCA C KTVYPLEK+ 
Sbjct: 61  HFEQLFKESGNFSKNFQPGKT--EKPELTRTPSKISSIFCGTQDKCAACEKTVYPLEKIQ 120

Query: 121 LEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKK- 180
           +EGEC+HK+CFRCAHGGC LTHS+YA+LD VLYC+ HF+QLFM KGNY+HVL+AA +++ 
Sbjct: 121 MEGECFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEKGNYAHVLQAANHRRT 180

Query: 181 --ATTPPPEQAEN 191
               T PPE  E+
Sbjct: 181 ASGNTLPPEPTED 191

[Close]

BLAST of Sed0016356 vs. TAIR 10
Match: AT3G61230.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 301.2 bits (770), Expect = 6.5e-82
Identity = 142/206 (68.93%), Postives = 170/206 (82.52%), Query Frame = 0


Query: 2   SFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTH 61
           +FTGT DKCKACDKTVYV+DL+TLEG PYHKSCF+CSHC GTL + +YS MDGVLYCKTH
Sbjct: 3   AFTGTTDKCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTH 62

Query: 62  FEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVAL 121
           FEQLFKESGNFSKNFQT+   EK N+ ++AP+++S+ FSGTQDKCA C KTVYPLEK+ +
Sbjct: 63  FEQLFKESGNFSKNFQTAGKTEKSNDATKAPNRLSSFFSGTQDKCAACKKTVYPLEKMTM 122

Query: 122 EGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKKAT 181
           EGE YHK+CFRCAH GC LTHS+YAALDGVLYCK HFSQLF+ KGNY+HVL+AAAN + +
Sbjct: 123 EGESYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEKGNYNHVLQAAANHRRS 182

Query: 182 TPPPEQAENDEAATDADQPKDEEKAE 208
           T   ++ E  E   D   P +EE ++
Sbjct: 183 TAEEDKTEPKE---DEANPTEEETSD 205

[Close]

BLAST of Sed0016356 vs. TAIR 10
Match: AT2G45800.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 294.7 bits (753), Expect = 6.1e-80
Identity = 140/213 (65.73%), Postives = 171/213 (80.28%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGTLDKCKACDKTVYV+DLLTLEGN YHKSCF+C+HCKGTL +S+YS MDGVLYCK 
Sbjct: 1   MSFTGTLDKCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQTSKSGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLEKVA 120
           HFEQLFKESGN+SKNFQ  K+ +  + L+R PSK+S+ FSGTQDKCATC KTVYPLEKV 
Sbjct: 61  HFEQLFKESGNYSKNFQAGKTEKPNDHLTRTPSKLSSFFSGTQDKCATCKKTVYPLEKVT 120

Query: 121 LEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANKK- 180
           +EGE YHK+CFRC H GC LTHS+YA+L+GVLYCK HF+QLF+ KG+Y+HV +AAAN + 
Sbjct: 121 MEGESYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEKGSYNHVHQAAANHRR 180

Query: 181 -----ATTPPPEQAENDEAATDADQPKDEEKAE 208
                  +PP +  + D+ A+  +  +D+   E
Sbjct: 181 SASSGGASPPSDDHKPDDTASIPEAKEDDAAPE 213

[Close]

BLAST of Sed0016356 vs. TAIR 10
Match: AT2G39900.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 262.7 bits (670), Expect = 2.6e-70
Identity = 116/184 (63.04%), Postives = 154/184 (83.70%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KC+AC+KTVY V+LL+ +G  YHK+CFKCSHCK  L +S+YS M+GV+YC+ 
Sbjct: 1   MSFTGTQQKCRACEKTVYPVELLSADGISYHKACFKCSHCKSRLQLSNYSSMEGVVYCRP 60

Query: 61  HFEQLFKESGNFSKNFQTSK---SGEKQNELSRAPSKISTMFSGTQDKCATCSKTVYPLE 120
           HFEQLFKESG+FSKNFQ+     + +   EL+R PS+++ MFSGTQDKCATC+KTVYP+E
Sbjct: 61  HFEQLFKESGSFSKNFQSPAKPLTDKPTPELNRTPSRLAGMFSGTQDKCATCTKTVYPIE 120

Query: 121 KVALEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAAN 180
           KV +E +CYHKSCF+C+HGGC ++ SNYAAL+G+LYCK HF+QLF  KG+Y+H++++A+ 
Sbjct: 121 KVTVESQCYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASI 180

Query: 181 KKAT 182
           K+AT
Sbjct: 181 KRAT 184

[Close]

BLAST of Sed0016356 vs. TAIR 10
Match: AT3G55770.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 261.9 bits (668), Expect = 4.4e-70
Identity = 118/182 (64.84%), Postives = 154/182 (84.62%), Query Frame = 0


Query: 1   MSFTGTLDKCKACDKTVYVVDLLTLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKT 60
           MSFTGT  KCKAC+KTVY V+LL+ +G  YHKSCFKC+HCK  L +SSYS M+GVLYCK 
Sbjct: 1   MSFTGTQQKCKACEKTVYAVELLSADGVGYHKSCFKCTHCKSRLQLSSYSSMEGVLYCKP 60

Query: 61  HFEQLFKESGNFSKNFQT-SKSGEKQN-ELSRAPSKISTMFSGTQDKCATCSKTVYPLEK 120
           HFEQLFKESG+F+KNFQ+ +KS +K   EL+R PS+++  FSGTQ+KCATCSKTVYP+EK
Sbjct: 61  HFEQLFKESGSFNKNFQSPAKSADKSTPELTRTPSRVAGRFSGTQEKCATCSKTVYPIEK 120

Query: 121 VALEGECYHKSCFRCAHGGCHLTHSNYAALDGVLYCKPHFSQLFMVKGNYSHVLEAAANK 180
           V +E + YHKSCF+C+HGGC ++ SNYAAL+G+LYCK HF+QLF  KG+Y+H++++A+ K
Sbjct: 121 VTVESQTYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIK 180

The following BLAST results are available for this feature:

BLAST of Sed0016356 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008438078.1	1.3e-100	85.99	PREDICTED: LIM domain-containing protein PLIM2c-like [Cucumis melo]	[more]
XP_011650764.2	1.7e-100	85.31	LIM domain-containing protein PLIM2b isoform X2 [Cucumis sativus]	[more]
XP_022975113.1	1.1e-99	86.41	LIM domain-containing protein PLIM2c-like [Cucurbita maxima]	[more]
KAG6597154.1	1.4e-99	86.41	LIM domain-containing protein PLIM2c, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_022934048.1	2.5e-99	86.41	LIM domain-containing protein PLIM2c-like [Cucurbita moschata] >XP_023540704.1 L...	[more]

BLAST of Sed0016356 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1ECF5	7.0e-81	72.02	LIM domain-containing protein PLIM2b OS=Arabidopsis thaliana OX=3702 GN=PLIM2B P...	[more]
Q500W4	9.1e-81	68.93	LIM domain-containing protein PLIM2c OS=Arabidopsis thaliana OX=3702 GN=PLIM2C P...	[more]
O80839	8.5e-79	65.73	LIM domain-containing protein PLIM2a OS=Arabidopsis thaliana OX=3702 GN=PLIM2A P...	[more]
Q7F9R9	2.9e-71	65.35	LIM domain-containing protein PLIM2b OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
O04193	3.6e-69	63.04	LIM domain-containing protein WLIM2a OS=Arabidopsis thaliana OX=3702 GN=WLIN2A P...	[more]

BLAST of Sed0016356 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AW36	6.3e-101	85.99	LIM domain-containing protein PLIM2c-like OS=Cucumis melo OX=3656 GN=LOC10348329...	[more]
A0A0A0L4A1	4.1e-100	84.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G122620 PE=4 SV=1	[more]
A0A6J1IIB7	5.3e-100	86.41	LIM domain-containing protein PLIM2c-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1F6K2	1.2e-99	86.41	LIM domain-containing protein PLIM2c-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1IRA7	5.0e-98	84.13	LIM domain-containing protein PLIM2c-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of Sed0016356 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01780.1	5.0e-82	72.02	GATA type zinc finger transcription factor family protein	[more]
AT3G61230.1	6.5e-82	68.93	GATA type zinc finger transcription factor family protein	[more]
AT2G45800.1	6.1e-80	65.73	GATA type zinc finger transcription factor family protein	[more]
AT2G39900.1	2.6e-70	63.04	GATA type zinc finger transcription factor family protein	[more]
AT3G55770.1	4.4e-70	64.84	GATA type zinc finger transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001781	Zinc finger, LIM-type	SMART	SM00132	lim_4	coord: 105..157 e-value: 4.7E-12 score: 56.1 coord: 9..61 e-value: 2.6E-12 score: 56.9
IPR001781	Zinc finger, LIM-type	PFAM	PF00412	LIM	coord: 106..161 e-value: 1.8E-10 score: 40.9 coord: 10..65 e-value: 6.9E-13 score: 48.6
IPR001781	Zinc finger, LIM-type	PROSITE	PS00478	LIM_DOMAIN_1	coord: 10..44
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 8..68 score: 13.4443
IPR001781	Zinc finger, LIM-type	PROSITE	PS50023	LIM_DOMAIN_2	coord: 104..164 score: 12.2761
None	No IPR available	GENE3D	2.10.110.10	Cysteine Rich Protein	coord: 100..170 e-value: 8.5E-19 score: 69.5 coord: 6..74 e-value: 9.2E-19 score: 69.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..211
None	No IPR available	PANTHER	PTHR24206:SF74	GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN	coord: 1..205
None	No IPR available	PANTHER	PTHR24206	OS06G0237300 PROTEIN	coord: 1..205
None	No IPR available	CDD	cd09440	LIM1_SF3	coord: 6..68 e-value: 4.15928E-37 score: 122.188
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 132..171
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 36..76
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 3..35
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 98..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016356.1	Sed0016356.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051017	actin filament bundle assembly
cellular_component	GO:0015629	actin cytoskeleton
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0051015	actin filament binding
molecular_function	GO:0046872	metal ion binding