Sed0016205 (gene) Chayote v1

Overview
NameSed0016205
Typegene
OrganismSechium edule (Chayote v1)
DescriptionTranscription factor PAR1-like
LocationLG01: 12149734 .. 12150219 (-)
RNA-Seq ExpressionSed0016205
SyntenySed0016205
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTCTTCTAATGGCTTCACCAGATTTGGCAGCTAACACCAGTTCCTCTTGCCATCACAATGTGGCTGGTTCGAGGGTGAAGAGGACGAGAAGAGAAGCACGTGAGGTTCGTCGGAAAGTTCAGAAGCTGCGGTGGGTGGTGCCGGGTGCCCGAGGGTTGCGACAGGAACATCTCTTTGCCAAGACGGCTCGTTACATATTGAATTTGAGATTGAAAGTCTGTGCTCTTGAAACCATTCTGAAATTGCAGGGCGAGGCTTGACAATGTCTTATGATATCAACATTTTTCTCTGTTTATTTTTCTTTAATTTTGTTTCTGTGGATCTGGTTGACATTGGAACAGGCATCTGATATTCGTAGTCACATTGTGGAATGTTTATTATATATTTATGTTATATACAGGTAGAAGCATCCATTTTTTTACTTTTTTCAAGCACAGTTGGATTGACACAACTTCAACCTATTTTTGGATTCTATTGGAGATAC

mRNA sequence

GTTTCTTCTAATGGCTTCACCAGATTTGGCAGCTAACACCAGTTCCTCTTGCCATCACAATGTGGCTGGTTCGAGGGTGAAGAGGACGAGAAGAGAAGCACGTGAGGTTCGTCGGAAAGTTCAGAAGCTGCGGTGGGTGGTGCCGGGTGCCCGAGGGTTGCGACAGGAACATCTCTTTGCCAAGACGGCTCGTTACATATTGAATTTGAGATTGAAAGTCTGTGCTCTTGAAACCATTCTGAAATTGCAGGGCGAGGCTTGACAATGTCTTATGATATCAACATTTTTCTCTGTTTATTTTTCTTTAATTTTGTTTCTGTGGATCTGGTTGACATTGGAACAGGCATCTGATATTCGTAGTCACATTGTGGAATGTTTATTATATATTTATGTTATATACAGGTAGAAGCATCCATTTTTTTACTTTTTTCAAGCACAGTTGGATTGACACAACTTCAACCTATTTTTGGATTCTATTGGAGATAC

Coding sequence (CDS)

ATGGCTTCACCAGATTTGGCAGCTAACACCAGTTCCTCTTGCCATCACAATGTGGCTGGTTCGAGGGTGAAGAGGACGAGAAGAGAAGCACGTGAGGTTCGTCGGAAAGTTCAGAAGCTGCGGTGGGTGGTGCCGGGTGCCCGAGGGTTGCGACAGGAACATCTCTTTGCCAAGACGGCTCGTTACATATTGAATTTGAGATTGAAAGTCTGTGCTCTTGAAACCATTCTGAAATTGCAGGGCGAGGCTTGA

Protein sequence

MASPDLAANTSSSCHHNVAGSRVKRTRREAREVRRKVQKLRWVVPGARGLRQEHLFAKTARYILNLRLKVCALETILKLQGEA
Homology
BLAST of Sed0016205 vs. NCBI nr
Match: KAA0055213.1 (transcription factor PAR1-like [Cucumis melo var. makuwa] >TYJ99143.1 transcription factor PAR1-like [Cucumis melo var. makuwa])

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-24
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 0

Query: 1  MASPDLAANTSSSCHHNVAGSRVKRTRREAREVRRKVQKLRWVVPGARGLRQEHLFAKTA 60
          MA  DL AN+S  CHHNVA S  KR RREAREVRRKVQKLRWVVPG RGLR+EHLFA+TA
Sbjct: 1  MALADLMANSSPPCHHNVAPSSSKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFARTA 60

Query: 61 RYILNLRLKVCALETILKLQG 82
           YIL+L+LKVCALE++LKLQG
Sbjct: 61 YYILHLKLKVCALESVLKLQG 81

BLAST of Sed0016205 vs. NCBI nr
Match: KAG7019830.1 (hypothetical protein SDJN02_18794, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-20
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0

Query: 12  SSCHHNVAGSRVKRTRREAREVRRKVQKLRWVVPGARGLRQEHLFAKTARYILNLRLKVC 71
           SSCH NV    +KR RREAR+VRRKVQKLRWVVPG RGL+QEHLFAKTA YIL+LRLKVC
Sbjct: 76  SSCHLNVPA--LKRKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLKVC 135

Query: 72  ALETILKLQGEA 84
           AL+TILKLQ EA
Sbjct: 136 ALQTILKLQDEA 145

BLAST of Sed0016205 vs. NCBI nr
Match: KAG6584233.1 (hypothetical protein SDJN03_20165, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-20
Identity = 58/72 (80.56%), Postives = 63/72 (87.50%), Query Frame = 0

Query: 12  SSCHHNVAGSRVKRTRREAREVRRKVQKLRWVVPGARGLRQEHLFAKTARYILNLRLKVC 71
           SSCH NV    +KR RREAR+VRRKVQKLRWVVPG RGL+QEHLFAKTA YIL+LRLKVC
Sbjct: 81  SSCHLNVPA--LKRKRREARQVRRKVQKLRWVVPGGRGLQQEHLFAKTAHYILHLRLKVC 140

Query: 72  ALETILKLQGEA 84
           AL+TILKLQ EA
Sbjct: 141 ALQTILKLQDEA 150

BLAST of Sed0016205 vs. NCBI nr
Match: KAG6573044.1 (Ubiquitin-conjugating enzyme E2 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 51/79 (64.56%), Postives = 59/79 (74.68%), Query Frame = 0

Query: 1  MASPDLAANTSSSCHHNVAGSRVKRTRREAREVRRKVQKLRWVVPGARGLRQEHLFAKTA 60
          MASPDL  N++SS + NVA SR+KR RREARE+RRKVQKLRWVV G R LR+EHLFAKTA
Sbjct: 1  MASPDLVPNSTSSFYDNVAPSRLKRKRREAREIRRKVQKLRWVVAGGRALRREHLFAKTA 60

Query: 61 RYILNLRLKVCALETILKL 80
           YIL L   +     +L L
Sbjct: 61 SYILYLSFPLLFSPFVLHL 79

BLAST of Sed0016205 vs. NCBI nr
Match: KAE8124179.1 (hypothetical protein FH972_019086 [Carpinus fangiana])

HSP 1 Score: 58.2 bits (139), Expect = 4.0e-05
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 0

Query: 2  ASPDLAANTSSSCHHNVAGSRVKRTRREAREVRRKVQKLRWVVPGARGLRQEHLFAKTAR 61
          A  DL   +       V   R  R +R  R V+ KVQKL+ +VPG  GL+ ++LFA+TA 
Sbjct: 5  ACEDLCNQSEDKMMGAVKVIRRSRGKRRQRAVQMKVQKLQRIVPGGDGLQPDNLFAQTAN 64

Query: 62 YILNLRLKVCALETILKL 80
          YIL+LRL+V ALE++L+L
Sbjct: 65 YILHLRLQVYALESVLRL 82

BLAST of Sed0016205 vs. ExPASy TrEMBL
Match: A0A5A7UGX9 (Transcription factor PAR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G003490 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 63/81 (77.78%), Postives = 70/81 (86.42%), Query Frame = 0

Query: 1  MASPDLAANTSSSCHHNVAGSRVKRTRREAREVRRKVQKLRWVVPGARGLRQEHLFAKTA 60
          MA  DL AN+S  CHHNVA S  KR RREAREVRRKVQKLRWVVPG RGLR+EHLFA+TA
Sbjct: 1  MALADLMANSSPPCHHNVAPSSSKRKRREAREVRRKVQKLRWVVPGGRGLRREHLFARTA 60

Query: 61 RYILNLRLKVCALETILKLQG 82
           YIL+L+LKVCALE++LKLQG
Sbjct: 61 YYILHLKLKVCALESVLKLQG 81

BLAST of Sed0016205 vs. ExPASy TrEMBL
Match: A0A5N6RR97 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_019086 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.0e-05
Identity = 36/78 (46.15%), Postives = 50/78 (64.10%), Query Frame = 0

Query: 2  ASPDLAANTSSSCHHNVAGSRVKRTRREAREVRRKVQKLRWVVPGARGLRQEHLFAKTAR 61
          A  DL   +       V   R  R +R  R V+ KVQKL+ +VPG  GL+ ++LFA+TA 
Sbjct: 5  ACEDLCNQSEDKMMGAVKVIRRSRGKRRQRAVQMKVQKLQRIVPGGDGLQPDNLFAQTAN 64

Query: 62 YILNLRLKVCALETILKL 80
          YIL+LRL+V ALE++L+L
Sbjct: 65 YILHLRLQVYALESVLRL 82

BLAST of Sed0016205 vs. ExPASy TrEMBL
Match: A0A0A0LQU9 (UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045930 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0

Query: 1  MASPDLAANTSSSCHHNVAGSRVKRTRREAREVRRKVQKLR 42
          MA  DL AN+SSSCHH+V  S +KR RREAREVRRKVQKLR
Sbjct: 1  MALADLMANSSSSCHHSVTASSLKRKRREAREVRRKVQKLR 41

BLAST of Sed0016205 vs. ExPASy TrEMBL
Match: A0A438EHL0 (BHLH domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_070132 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.4e-05
Identity = 30/62 (48.39%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 18 VAGSRVKRTRREAREVRRKVQKLRWVVPGARGLRQEHLFAKTARYILNLRLKVCALETIL 77
          ++G +++R RR  R VRRKV+KL+ ++PG RGL+ + LF +TA YIL+LRL+V  L+ + 
Sbjct: 9  MSGEKLRRRRR--RSVRRKVKKLQRLIPGGRGLQPDRLFLRTADYILHLRLQVNVLQALS 68

Query: 78 KL 80
          K+
Sbjct: 69 KI 68

BLAST of Sed0016205 vs. ExPASy TrEMBL
Match: A0A438JND2 (BHLH domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_016970 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 7.4e-05
Identity = 30/62 (48.39%), Postives = 47/62 (75.81%), Query Frame = 0

Query: 18 VAGSRVKRTRREAREVRRKVQKLRWVVPGARGLRQEHLFAKTARYILNLRLKVCALETIL 77
          ++G +++R RR  R VRRKV+KL+ ++PG RGL+ + LF +TA YIL+LRL+V  L+ + 
Sbjct: 9  MSGEKLRRRRR--RSVRRKVKKLQRLIPGGRGLQPDRLFLRTADYILHLRLQVNVLQALS 68

Query: 78 KL 80
          K+
Sbjct: 69 KI 68

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0055213.12.3e-2477.78transcription factor PAR1-like [Cucumis melo var. makuwa] >TYJ99143.1 transcript... [more]
KAG7019830.12.0e-2080.56hypothetical protein SDJN02_18794, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6584233.12.0e-2080.56hypothetical protein SDJN03_20165, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573044.13.3e-1564.56Ubiquitin-conjugating enzyme E2 5, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8124179.14.0e-0546.15hypothetical protein FH972_019086 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UGX91.1e-2477.78Transcription factor PAR1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5N6RR972.0e-0546.15Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_019086 PE=4 SV=1[more]
A0A0A0LQU92.5e-0575.61UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G045930 PE... [more]
A0A438EHL07.4e-0548.39BHLH domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_070132 PE=4 S... [more]
A0A438JND27.4e-0548.39BHLH domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_016970 PE=4 S... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 23..43
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..19
NoneNo IPR availablePANTHERPTHR33124:SF9TRANSCRIPTION FACTORcoord: 23..78
IPR044660Transcription factor IBH1-likePANTHERPTHR33124TRANSCRIPTION FACTOR IBH1-LIKE 1coord: 23..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0016205.1Sed0016205.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated