Sed0016154 (gene) Chayote v1

Overview


Name	Sed0016154
Type	gene
Organism	Sechium edule (Chayote v1)
Description	protein CURVATURE THYLAKOID 1B, chloroplastic
Location	LG04: 36578343 .. 36582249 (-)
RNA-Seq Expression	Sed0016154
Synteny	Sed0016154

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAATTATTATTTGGTGTGTTCGGTATAGAACCCAAACACTCATGTCCAGCCCTTTATAGCCTTTTATCCAACCAAACACCTTAAAATCCCTATCCATTTCAATACTCTCACAAAACATTATCCAAATTGATCGTGAAATGATTGGTTGCCAATCTTCAAACTGATCAACTCCCAATCTCTAAATTATCAAAACCCTCTCACACAAAAACCTGAAAATTACCCTAAAAAGAAAAACACACACAAATCAATATCTACAAAACCAAACCCCTCAACAAAAATTACTCTTTAGCCTTTTTCTTGTGCAATTTGAGTGCCAATGGCTTCTTCTTCCTCATCCACATTTGCTCTCTCTTCCTCTTCCACCCTCCTCGACTCCAAGGCCCCACGACAATCCGCTCCGCCGTCATCGAACGTGCCTCTCCCGACTCTCCCACCGCCACCAATGCCCGCGCAGATTCGCCCTTGGAAGTCCACTGCCTACTGTGAGAATTATATTATTTTAGTTGCTTGCTTAATTAATTAATTAATTACCGATTCTAAAATTTAGATTCGATGAGCACTGAAATCAATAAATAATCGGGAGAATAATGACTCAATTATTTATGGTCTTTGTACACAGAAAAAAAACTCTAGTAAATTTAACCCAATTTAAAGATTACAATATAATTCCAACAAATGTCTATCGATGGGTTGAGATAAATTTAATTTTTTTTATAACGAGTATCTTTTGTTTAGGCCGGAAGATTGCTCGTAATGTGATGGCTATGGCGACTGGAGACGTGCCGGCTGAAGTGGCCACCGGGGAGCTGGCAGAGCTGCCGGAAATTATCAAAAAAGTTCAAGAAGCTGTATGCTAAAAATATTATATGATAATAATAATAATATTTATTTTTTCAGTTAATGTGATTTACATTGTGCTTATTTTGTATGTCAGTGGGATAAGGTTGATGATAAATATGCAGTAAGTTCACTTGCAGTGTCCGGTTTCGTCGCACTTGTGGCCTCCGCCGGCGTTGTCTCGGTCAGCCTTTTCTTTCTTCTTATTTTTATTTATGGAGATTTTTTATGGGTAGCAAAAGAATAAAGTTAAATACACTAAAAATGGATTTTTTTTATTACAAATACTGATTTCTAAGATCCAACTATGATCATGAAATGAAAATGAATTGACACCAAACTATATAATCAATCAGGTGATTGACCCATTTCGTTACTAAAAACGGATTTAATCACCTTAAATTTAATAATTATAAAATTGATATGCTTCAAAAGTAAAATTAAATTTGAAATTGATAACATTTAATCAAATTAAAAATTTATTTATATATTTTGCTATGTATGATTGGTTGAAATTTGCCATTACAAATTTTGTTTATTTACTTATTTTGAAACGGCAATGATAAATATACATTGGATTTAGTAATTTTAAGAAAGTTAAAATTTAATTTAATGTAAAAATTAGAATTTGATCACTATGATAATAAAAGTTGTTAAGGTGCACTAATATTTATCGGTCATGAATTTGAATCATTTTCCCCAAATTGTAGTTGAACTAGAAAAAAAAGAGTAAAACTTAAAGATTAGTTCATGTCTAACTAATATTCATGTATAAATGATGCAATTTTTTTATTAAAATGAGAGATTTGGAGATTCCAACCTCAAATCTCAAAGTTGTTAATACACTAGCTGTAATTTGAGTTATGCTTACTTTGACATTTTTTTGTTCATTTAGTTACTTATTTCTGAAACATAAATAACTAAAATGATTACAATTATATAGACTAAATTCTATCTTTTCCAAATTAAACCATTCTAATTTTGTGGGATTTTTTCTTTTCTTCGACAGGCAATTGATAGACTTCCTCTCATTCCTGGCCTGCTTGAGCTTGTGGGCATTGGCTACTCTGGGGTAAGTCTTATTTACTTGCACAATGTTGAGAGATACACGATTGTTTATAAAACAAAATCTTGTAGATAATTGATCATTAAGTTCATACAAAATGCCTCAAATAAGTGTAACTGGTTTCAATTTTGGCTCTAATTTATGAATTTCGTTTCTATTTACTAGAAGTGAACATGGATTGGGTTGGGTTGGGTTGTGGGAGGGTTTTCAACGTAACCCAACCCAACTTTTCGGGTTCGTCACTTTTCCAACCCAACCCAACCCTATATTTTCGGGTTGGGTTGGGTTGGATTTCTCGGTTTATATCAATATATTTTGTAGTTTAAAAATAATTTACGATAAGAAAAATATTGGGTATTGGAATCAAATTGGTAATTTTGTATGCATAAATTTGTATTGAAAACATAGAAAAGTAAAAACTACCATCTCAAGATTCAATATGTAAATAAATCAAAATTAAAAAAATAAATAAATTGGGCAAAAATATTATTAAAATATAAATAAAGTGAAAAAAGAAATTGGACATTTTCAATCTATACTTGATTGAGTTTCGTTTTATTAATAGATGAAATAGATTTATAGTGGCTCAATGACATGAATGTAGTTTCATGATCAAAATCTCTCTTCCTTCATCGTAAATTATTTTTAAACTACATTCATCCATCTCGATCACCTGCGCCATGTTAGACATCCAAAAGCAACTCACCACTGTGCCACTATGCCTTATTCAAACAAGTTACACACAAATATTATATATCTCGGTTTGGTTCGGGTTGAACCGAACCAAAATATAACAAACCCGAACCCGAACCGAAAATAAATTCAACCCAACCCAACCCTTATAATTTGGGTTGGGTCCGGGTTCGTCGGGTTGTCGGTTCATTTGTACACCCCTACTATTTACCCTCCTCTCATTTCTTCTAATTTTGAAAATTTTATAATTGTTGAAATATGCTTTGAATGCACCAACGAATATCGTACTACTGCAATGTGTTTCGTATGCGTATGCACATTTGCACTCTATCTAATGCTTACGCATTATGTAATAGAGTTTAATGAGAGTGCATACATAAACTCGAATTAAACTCTAGCCGTATATAACGTTCATTATGTAATTCACATCTCCTTAATAAAATTGTTTTCCTTCTCTACCCGTGGACTAGCTAACATTATGTTAGTGAACCACGTAAATCCATATGTATTCTTATTTCCTCTTCTTTTGCGTTTATCATTATCTGTTTTCATATTTTCTAATTGATGGTTTATCGTGGTTTTCATAAGAATAACTAAAATTAAATTTTGGGGAAAATGGTTTTTTTTTGTAAAAACAGATCCAAAGATATTTTCAACTGTCACTAATTTAGGGGGAAAATATTTTTTAAGATTCAGAATAAAATTGAAAGTCAAATCATGTAAATTAAGAGCATATGGCATTAATTATTACCTGCTTTCCATGTAAATGGTGGCTAAACTTTTGTTTGGTAATGAAATCCTTGTGCAGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGTGAGTTCTAATATTATTGTTTAAGATTGCATTTGAGTGATTTTTTTTTTTTTTTACTTTCTATATTGTTTACATTGGATGAATTATTTTATTGCAGGGAAGCTTTGTTGCAGAAACTAAAGGAAACTTACAATGAAATAATTGGAAGCAGCTAAAGAAGATGTGCTCGAAGAAGGGATTTAATGCTCTTTGGCTAATAAGAGTTCAAAATCTGGCCATCTCTTTTCTAGCAAATCTTTAATTGCTGCTTGCAACTCTATTTGCATGAAAAATTGTAACTTCTTTTCCCCACCTCTTTTTTTCCATTTATTTTGTAATTTCTAGCTAACTCAATCCCATTGTACTTTATGTGCTCCCATTTTACTCTTAAATAATGTCAACTTATGGCAATTCTTAGCCACTTATATGCATTAAACAAGAAAAAACCAACAAACAAAAGATGGACGAATATCTTCTATAATTT

mRNA sequence

GGAAATTATTATTTGGTGTGTTCGGTATAGAACCCAAACACTCATGTCCAGCCCTTTATAGCCTTTTATCCAACCAAACACCTTAAAATCCCTATCCATTTCAATACTCTCACAAAACATTATCCAAATTGATCGTGAAATGATTGGTTGCCAATCTTCAAACTGATCAACTCCCAATCTCTAAATTATCAAAACCCTCTCACACAAAAACCTGAAAATTACCCTAAAAAGAAAAACACACACAAATCAATATCTACAAAACCAAACCCCTCAACAAAAATTACTCTTTAGCCTTTTTCTTGTGCAATTTGAGTGCCAATGGCTTCTTCTTCCTCATCCACATTTGCTCTCTCTTCCTCTTCCACCCTCCTCGACTCCAAGGCCCCACGACAATCCGCTCCGCCGTCATCGAACGTGCCTCTCCCGACTCTCCCACCGCCACCAATGCCCGCGCAGATTCGCCCTTGGAAGTCCACTGCCTACTGCCGGAAGATTGCTCGTAATGTGATGGCTATGGCGACTGGAGACGTGCCGGCTGAAGTGGCCACCGGGGAGCTGGCAGAGCTGCCGGAAATTATCAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGATGATAAATATGCAGTAAGTTCACTTGCAGTGTCCGGTTTCGTCGCACTTGTGGCCTCCGCCGGCGTTGTCTCGGCAATTGATAGACTTCCTCTCATTCCTGGCCTGCTTGAGCTTGTGGGCATTGGCTACTCTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGGAAGCTTTGTTGCAGAAACTAAAGGAAACTTACAATGAAATAATTGGAAGCAGCTAAAGAAGATGTGCTCGAAGAAGGGATTTAATGCTCTTTGGCTAATAAGAGTTCAAAATCTGGCCATCTCTTTTCTAGCAAATCTTTAATTGCTGCTTGCAACTCTATTTGCATGAAAAATTGTAACTTCTTTTCCCCACCTCTTTTTTTCCATTTATTTTGTAATTTCTAGCTAACTCAATCCCATTGTACTTTATGTGCTCCCATTTTACTCTTAAATAATGTCAACTTATGGCAATTCTTAGCCACTTATATGCATTAAACAAGAAAAAACCAACAAACAAAAGATGGACGAATATCTTCTATAATTT

Coding sequence (CDS)

ATGGCTTCTTCTTCCTCATCCACATTTGCTCTCTCTTCCTCTTCCACCCTCCTCGACTCCAAGGCCCCACGACAATCCGCTCCGCCGTCATCGAACGTGCCTCTCCCGACTCTCCCACCGCCACCAATGCCCGCGCAGATTCGCCCTTGGAAGTCCACTGCCTACTGCCGGAAGATTGCTCGTAATGTGATGGCTATGGCGACTGGAGACGTGCCGGCTGAAGTGGCCACCGGGGAGCTGGCAGAGCTGCCGGAAATTATCAAAAAAGTTCAAGAAGCTTGGGATAAGGTTGATGATAAATATGCAGTAAGTTCACTTGCAGTGTCCGGTTTCGTCGCACTTGTGGCCTCCGCCGGCGTTGTCTCGGCAATTGATAGACTTCCTCTCATTCCTGGCCTGCTTGAGCTTGTGGGCATTGGCTACTCTGGGTGGTTTGCATACAAGAATCTGATTTTCAGACCAGACAGGGAAGCTTTGTTGCAGAAACTAAAGGAAACTTACAATGAAATAATTGGAAGCAGCTAA

Protein sequence

MASSSSSTFALSSSSTLLDSKAPRQSAPPSSNVPLPTLPPPPMPAQIRPWKSTAYCRKIARNVMAMATGDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAGVVSAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS

Homology

[Close]

BLAST of Sed0016154 vs. NCBI nr
Match: XP_038906765.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Benincasa hispida])

HSP 1 Score: 300.1 bits (767), Expect = 1.3e-77
Identity = 161/175 (92.00%), Postives = 169/175 (96.57%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSAPPSSNVPLPTLPPPPMP-AQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSA PS+NVPLPTLP PP P +QIRPWKSTAYCRK+
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSANVPLPTLPSPPTPSSQIRPWKSTAYCRKV 60

Query: 61  ARNVMAMATGDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAG 120
           ARNVMAMATG+VPAEVA GELAE+PEIIKKVQEAWDKV+DKYAVSSLAVSGFVAL ASAG
Sbjct: 61  ARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPLIPGLLELVGIGY+GWFAYKNLIFRPDREALLQKLKETY+EIIGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]

BLAST of Sed0016154 vs. NCBI nr
Match: XP_022992417.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita maxima])

HSP 1 Score: 298.9 bits (764), Expect = 2.8e-77
Identity = 162/175 (92.57%), Postives = 168/175 (96.00%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSAPPSSNVPLPTLPPPPMPA-QIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSA PSS VPLPTLP PP P+ QIRPWKSTAYCR+I
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPAPSTQIRPWKSTAYCRRI 60

Query: 61  ARNVMAMATGDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAG 120
           ARNVMAMATG+VPAEVAT E+AELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVAL ASAG
Sbjct: 61  ARNVMAMATGEVPAEVATVEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPLIPGLLELVGIGY+GWFAYKNLIFRPDREALLQKL+ETYNEIIGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEIIGSS 175

[Close]

BLAST of Sed0016154 vs. NCBI nr
Match: XP_022929793.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita moschata] >XP_023547749.1 protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita pepo subsp. pepo] >KAG7013838.1 Protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.4 bits (760), Expect = 8.3e-77
Identity = 161/175 (92.00%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSAPPSSNVPLPTLPPPPMPA-QIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSA PSS VPLPTLP PP P+ QIR WKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60

Query: 61  ARNVMAMATGDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAG 120
           ARNVMAMATG+VPAEVAT E+AELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVAL ASAG
Sbjct: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPLIPGLLELVGIGY+GWFAYKNLIFRPDREALLQKL+ETYNE+IGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEVIGSS 175

[Close]

BLAST of Sed0016154 vs. NCBI nr
Match: XP_004140528.1 (protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN46474.1 hypothetical protein Csa_005298 [Cucumis sativus])

HSP 1 Score: 297.0 bits (759), Expect = 1.1e-76
Identity = 159/175 (90.86%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSAPPSSNVPLPTLPPPPMP-AQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSA PSS VPLPTLP PP P +QIRPWKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMAMATGDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAG 120
           ARNVM MATG+VPAEVA GELAE+PEI+KKVQEAWDKV+DKYAVSSLAVSGFVAL ASAG
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPL+PGLLELVGIGY+GWFAYKNLIFRPDREALLQKLKETY+EIIGSS
Sbjct: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]

BLAST of Sed0016154 vs. NCBI nr
Match: XP_008459821.1 (PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo] >KAA0039802.1 protein CURVATURE THYLAKOID 1B [Cucumis melo var. makuwa] >TYK24695.1 protein CURVATURE THYLAKOID 1B [Cucumis melo var. makuwa])

HSP 1 Score: 293.9 bits (751), Expect = 9.2e-76
Identity = 161/176 (91.48%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSAPPSSNVPLPTLPPPPMP-AQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS  PSS VPLPTLP PP P AQIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASA 120
           IARNVMAMATG+VPAEVA GELAE+PEIIKKVQEAWDKV+DKYAVSSLAVSGFVAL ASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS 175
           GVVSAIDRLPL+PGLLELVGIGY+GWFAYKNLIFRPDREALLQKLKETY+EIIGSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]

BLAST of Sed0016154 vs. ExPASy Swiss-Prot
Match: Q8LCA1 (Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1B PE=1 SV=2)

HSP 1 Score: 188.3 bits (477), Expect = 7.1e-47
Identity = 99/173 (57.23%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 7   STFALSSSSTLLDSKAP--RQSAPPSSNVPLPTLPPPPMPAQIRPWKSTAYCRKIARNVM 66
           ++ ++SSSST++DS+AP  R ++  +S+    +LP  P+ +  R  K+TAYCRKI RNV+
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVV 61

Query: 67  AMAT---GDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAGVV 126
             AT   G+ PA     E  ELPEI+K  QEAW+KVDDKYA+ SLA +G VAL  SAG++
Sbjct: 62  TRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMI 121

Query: 127 SAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS 175
           SAIDRLPL+PG+LELVGIGY+GWF YKNL+F+PDREAL +K+K TY +I+GSS
Sbjct: 122 SAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

[Close]

BLAST of Sed0016154 vs. ExPASy Swiss-Prot
Match: Q9M812 (Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1C PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 9.4e-15
Identity = 36/88 (40.91%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 85  EIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAGVVSAIDRLPLIPGLLELVGIGYSGW 144
           +++  +Q  WDK +D+  +  L  +G VAL AS  +++AID+LP+I    ELVGI +S W
Sbjct: 68  DVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTW 127

Query: 145 FAYKNLIFRPDREALLQKLKETYNEIIG 173
           F Y+ L+F+PDR+ L + +K++  +I+G
Sbjct: 128 FTYRYLLFKPDRQELSKIVKKSVADILG 155

[Close]

BLAST of Sed0016154 vs. ExPASy Swiss-Prot
Match: O04616 (Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1A PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.3e-12
Identity = 34/89 (38.20%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 85  EIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAGVVSAIDRLPLIPGLLELVGIGYSGW 144
           E+I  ++E WD +++K  V        VA+  S+ VV AI+ +PL+P ++ELVG+GY+GW
Sbjct: 75  ELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGW 134

Query: 145 FAYKNLIFRPDREALLQKLKETYNEIIGS 174
           F Y+ L+F+  R+ L + ++    +I GS
Sbjct: 135 FVYRYLLFKSSRKELAEDIESLKKKIAGS 163

[Close]

BLAST of Sed0016154 vs. ExPASy Swiss-Prot
Match: Q8LDD3 (Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CURT1D PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.9e-09
Identity = 27/76 (35.53%), Postives = 48/76 (63.16%), Query Frame = 0


Query: 98  DDKYAVSSLAVSGFVALVASAGVVSAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDRE 157
           D  Y++        VAL  ++ +VS+++ +PL P L+E+VG+GY+ WF  + L+F+ +RE
Sbjct: 115 DKTYSILLYGSGAIVALYLTSAIVSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNRE 174

Query: 158 ALLQKLKETYNEIIGS 174
            L  K+ E   +++GS
Sbjct: 175 ELKTKVSEIKKQVLGS 190

[Close]

BLAST of Sed0016154 vs. ExPASy Swiss-Prot
Match: Q8YX97 (Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=valS PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 5.1e-05
Identity = 21/57 (36.84%), Postives = 32/57 (56.14%), Query Frame = 0


Query: 106 LAVSGFVALVASAGVVSAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQK 163
           L ++G V L  +  V   +D +P +    E+VG+GYS WF  +NL+  P R+  L K
Sbjct: 850 LVIAGLVFLRVALAVADTVDNVPFLGTFFEIVGLGYSAWFVTRNLLSTPARKRFLAK 906

[Close]

BLAST of Sed0016154 vs. ExPASy TrEMBL
Match: A0A6J1JPR9 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111488730 PE=4 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.4e-77
Identity = 162/175 (92.57%), Postives = 168/175 (96.00%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSAPPSSNVPLPTLPPPPMPA-QIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSA PSS VPLPTLP PP P+ QIRPWKSTAYCR+I
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPAPSTQIRPWKSTAYCRRI 60

Query: 61  ARNVMAMATGDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAG 120
           ARNVMAMATG+VPAEVAT E+AELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVAL ASAG
Sbjct: 61  ARNVMAMATGEVPAEVATVEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPLIPGLLELVGIGY+GWFAYKNLIFRPDREALLQKL+ETYNEIIGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEIIGSS 175

[Close]

BLAST of Sed0016154 vs. ExPASy TrEMBL
Match: A0A6J1ET79 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111436295 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 4.0e-77
Identity = 161/175 (92.00%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSAPPSSNVPLPTLPPPPMPA-QIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSA PSS VPLPTLP PP P+ QIR WKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPPPSTQIRSWKSTAYCRKI 60

Query: 61  ARNVMAMATGDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAG 120
           ARNVMAMATG+VPAEVAT E+AELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVAL ASAG
Sbjct: 61  ARNVMAMATGEVPAEVATAEMAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPLIPGLLELVGIGY+GWFAYKNLIFRPDREALLQKL+ETYNE+IGSS
Sbjct: 121 VVSAIDRLPLIPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLRETYNEVIGSS 175

[Close]

BLAST of Sed0016154 vs. ExPASy TrEMBL
Match: A0A0A0KCB7 (CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.2e-77
Identity = 159/175 (90.86%), Postives = 167/175 (95.43%), Query Frame = 0


Query: 1   MASSSSSTFALSSSSTLLDSKAPRQSAPPSSNVPLPTLPPPPMP-AQIRPWKSTAYCRKI 60
           MASSSSSTFALSSSSTLLDSKAPRQSA PSS VPLPTLP PP P +QIRPWKSTAYCRKI
Sbjct: 1   MASSSSSTFALSSSSTLLDSKAPRQSASPSSTVPLPTLPSPPTPLSQIRPWKSTAYCRKI 60

Query: 61  ARNVMAMATGDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAG 120
           ARNVM MATG+VPAEVA GELAE+PEI+KKVQEAWDKV+DKYAVSSLAVSGFVAL ASAG
Sbjct: 61  ARNVMGMATGEVPAEVAAGELAEMPEIVKKVQEAWDKVEDKYAVSSLAVSGFVALWASAG 120

Query: 121 VVSAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS 175
           VVSAIDRLPL+PGLLELVGIGY+GWFAYKNLIFRPDREALLQKLKETY+EIIGSS
Sbjct: 121 VVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 175

[Close]

BLAST of Sed0016154 vs. ExPASy TrEMBL
Match: A0A5A7T8Q0 (Protein CURVATURE THYLAKOID 1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002480 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.4e-76
Identity = 161/176 (91.48%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSAPPSSNVPLPTLPPPPMP-AQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS  PSS VPLPTLP PP P AQIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASA 120
           IARNVMAMATG+VPAEVA GELAE+PEIIKKVQEAWDKV+DKYAVSSLAVSGFVAL ASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS 175
           GVVSAIDRLPL+PGLLELVGIGY+GWFAYKNLIFRPDREALLQKLKETY+EIIGSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]

BLAST of Sed0016154 vs. ExPASy TrEMBL
Match: A0A1S3CCA4 (protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103498834 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.4e-76
Identity = 161/176 (91.48%), Postives = 167/176 (94.89%), Query Frame = 0


Query: 1   MASSSSSTFALSSS-STLLDSKAPRQSAPPSSNVPLPTLPPPPMP-AQIRPWKSTAYCRK 60
           MASSSSSTFALSSS STLLDSKAPRQS  PSS VPLPTLP PP P AQIRPWKSTAYCRK
Sbjct: 1   MASSSSSTFALSSSASTLLDSKAPRQSGSPSSTVPLPTLPSPPTPSAQIRPWKSTAYCRK 60

Query: 61  IARNVMAMATGDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASA 120
           IARNVMAMATG+VPAEVA GELAE+PEIIKKVQEAWDKV+DKYAVSSLAVSGFVAL ASA
Sbjct: 61  IARNVMAMATGEVPAEVAAGELAEMPEIIKKVQEAWDKVEDKYAVSSLAVSGFVALWASA 120

Query: 121 GVVSAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS 175
           GVVSAIDRLPL+PGLLELVGIGY+GWFAYKNLIFRPDREALLQKLKETY+EIIGSS
Sbjct: 121 GVVSAIDRLPLVPGLLELVGIGYTGWFAYKNLIFRPDREALLQKLKETYSEIIGSS 176

[Close]

BLAST of Sed0016154 vs. TAIR 10
Match: AT2G46820.1 (photosystem I P subunit )

HSP 1 Score: 188.3 bits (477), Expect = 5.0e-48
Identity = 99/173 (57.23%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 7   STFALSSSSTLLDSKAP--RQSAPPSSNVPLPTLPPPPMPAQIRPWKSTAYCRKIARNVM 66
           ++ ++SSSST++DS+AP  R ++  +S+    +LP  P+ +  R  K+TAYCRKI RNV+
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVV 61

Query: 67  AMAT---GDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAGVV 126
             AT   G+ PA     E  ELPEI+K  QEAW+KVDDKYA+ SLA +G VAL  SAG++
Sbjct: 62  TRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMI 121

Query: 127 SAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS 175
           SAIDRLPL+PG+LELVGIGY+GWF YKNL+F+PDREAL +K+K TY +I+GSS
Sbjct: 122 SAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

[Close]

BLAST of Sed0016154 vs. TAIR 10
Match: AT2G46820.2 (photosystem I P subunit )

HSP 1 Score: 188.3 bits (477), Expect = 5.0e-48
Identity = 99/173 (57.23%), Postives = 131/173 (75.72%), Query Frame = 0


Query: 7   STFALSSSSTLLDSKAP--RQSAPPSSNVPLPTLPPPPMPAQIRPWKSTAYCRKIARNVM 66
           ++ ++SSSST++DS+AP  R ++  +S+    +LP  P+ +  R  K+TAYCRKI RNV+
Sbjct: 2   ASLSVSSSSTIIDSRAPPSRLASASASSPSCISLPTLPIQSHTRAAKATAYCRKIVRNVV 61

Query: 67  AMAT---GDVPAEVATGELAELPEIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAGVV 126
             AT   G+ PA     E  ELPEI+K  QEAW+KVDDKYA+ SLA +G VAL  SAG++
Sbjct: 62  TRATTEVGEAPATTTEAETTELPEIVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMI 121

Query: 127 SAIDRLPLIPGLLELVGIGYSGWFAYKNLIFRPDREALLQKLKETYNEIIGSS 175
           SAIDRLPL+PG+LELVGIGY+GWF YKNL+F+PDREAL +K+K TY +I+GSS
Sbjct: 122 SAIDRLPLVPGVLELVGIGYTGWFTYKNLVFKPDREALFEKVKSTYKDILGSS 174

[Close]

BLAST of Sed0016154 vs. TAIR 10
Match: AT1G52220.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 291 Blast hits to 291 proteins in 50 species: Archae - 0; Bacteria - 90; Metazoa - 0; Fungi - 0; Plants - 200; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 81.6 bits (200), Expect = 6.7e-16
Identity = 36/88 (40.91%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 85  EIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAGVVSAIDRLPLIPGLLELVGIGYSGW 144
           +++  +Q  WDK +D+  +  L  +G VAL AS  +++AID+LP+I    ELVGI +S W
Sbjct: 68  DVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTW 127

Query: 145 FAYKNLIFRPDREALLQKLKETYNEIIG 173
           F Y+ L+F+PDR+ L + +K++  +I+G
Sbjct: 128 FTYRYLLFKPDRQELSKIVKKSVADILG 155

[Close]

BLAST of Sed0016154 vs. TAIR 10
Match: AT1G52220.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: photosystem I P subunit (TAIR:AT2G46820.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-14
Identity = 36/88 (40.91%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 85  EIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAGVVSAIDRLPLIPGLLELVGIGYSGW 144
           +++  +Q  WDK +D+  +  L  +G VAL AS  +++AID+LP+I    ELVGI +S W
Sbjct: 68  DVVSTIQN-WDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGILFSTW 127

Query: 145 FAYKNLIFRPDREALLQKLKETYNEIIG 173
           F Y+ L+F+PDR+ L + +K++  +I+G
Sbjct: 128 FTYRYLLFKPDRQELSKIVKKSVADILG 154

[Close]

BLAST of Sed0016154 vs. TAIR 10
Match: AT4G01150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G38100.1); Has 323 Blast hits to 323 proteins in 59 species: Archae - 0; Bacteria - 107; Metazoa - 0; Fungi - 0; Plants - 206; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-13
Identity = 34/89 (38.20%), Postives = 57/89 (64.04%), Query Frame = 0


Query: 85  EIIKKVQEAWDKVDDKYAVSSLAVSGFVALVASAGVVSAIDRLPLIPGLLELVGIGYSGW 144
           E+I  ++E WD +++K  V        VA+  S+ VV AI+ +PL+P ++ELVG+GY+GW
Sbjct: 75  ELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGW 134

Query: 145 FAYKNLIFRPDREALLQKLKETYNEIIGS 174
           F Y+ L+F+  R+ L + ++    +I GS
Sbjct: 135 FVYRYLLFKSSRKELAEDIESLKKKIAGS 163

The following BLAST results are available for this feature:

BLAST of Sed0016154 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906765.1	1.3e-77	92.00	protein CURVATURE THYLAKOID 1B, chloroplastic [Benincasa hispida]	[more]
XP_022992417.1	2.8e-77	92.57	protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita maxima]	[more]
XP_022929793.1	8.3e-77	92.00	protein CURVATURE THYLAKOID 1B, chloroplastic [Cucurbita moschata] >XP_023547749...	[more]
XP_004140528.1	1.1e-76	90.86	protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis sativus] >KGN46474.1 hypo...	[more]
XP_008459821.1	9.2e-76	91.48	PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Cucumis melo] >KAA0039...	[more]

BLAST of Sed0016154 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCA1	7.1e-47	57.23	Protein CURVATURE THYLAKOID 1B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9M812	9.4e-15	40.91	Protein CURVATURE THYLAKOID 1C, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O04616	4.3e-12	38.20	Protein CURVATURE THYLAKOID 1A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8LDD3	5.9e-09	35.53	Protein CURVATURE THYLAKOID 1D, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q8YX97	5.1e-05	36.84	Valine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=1...	[more]

BLAST of Sed0016154 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPR9	1.4e-77	92.57	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1ET79	4.0e-77	92.00	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A0A0KCB7	5.2e-77	90.86	CAAD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G095900 PE=4 S...	[more]
A0A5A7T8Q0	4.4e-76	91.48	Protein CURVATURE THYLAKOID 1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3CCA4	4.4e-76	91.48	protein CURVATURE THYLAKOID 1B, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of Sed0016154 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G46820.1	5.0e-48	57.23	photosystem I P subunit	[more]
AT2G46820.2	5.0e-48	57.23	photosystem I P subunit	[more]
AT1G52220.1	6.7e-16	40.91	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G52220.2	1.6e-14	40.91	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT4G01150.1	3.1e-13	38.20	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025564	Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain	PFAM	PF14159	CAAD	coord: 88..172 e-value: 2.4E-28 score: 97.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR33222:SF9	PROTEIN CURVATURE THYLAKOID 1B, CHLOROPLASTIC	coord: 1..174
IPR033344	Protein CURVATURE THYLAKOID 1	PANTHER	PTHR33222	FAMILY NOT NAMED	coord: 1..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016154.1	Sed0016154.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity