Sed0016146 (gene) Chayote v1

Overview


Name	Sed0016146
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG01: 15493975 .. 15494660 (+)
RNA-Seq Expression	Sed0016146
Synteny	Sed0016146

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACTAAAATTAAGTTACCTAGTCAAAGCAGTGGTTTATACCAGAAGCAGCCAAGCCAAGGCCAACAGCTACTTTTGATAGTGACAGGACATTTGAGAGCTGTCTGCCCCAACCATGCCTCTTTTCCCCCACCATTCCTGTCTGAATGATAGAATTTTAGCCTTCCAATGTGTTGCTCTTTCTTCAGCAACCTTGCGCTGTACTCTTCCCACTCTCTTCAAATTCCCAACCCTTTTGCTCAAACTCAACATATAAATATATGAATATCTTTTAGGGAGTGTTTCCACTATACCCTTTGATTTCCTGGGTTGCTCTGGCAACTTCCCACTCAAAAAATTTGCAGCCTTTTCTTAGGGGCATTTTATCAAACAGGTTGTGGGCAGGAACCTGCGCGCTTGCAATGAAACTGGAGAGTGGTAGAGGCTTGGAGAGGATGAATGCAAACAGCAAAAGGCTGTGTATGAGTTTGTTGTGGAGGGCGAGGGCGGCTTTGAAGAAGGCGATCAAGAACAGAAGCAAACGGCGGCAGCTAAAGTTTCAGTATGATCCCAGTAGCTATGCTCTTAATTTTGACGATGGGCACAGCAAAATCAGCGACGCCATTGTTGATGAAGTTCAGAATTGTGGCCATGTTTACAATTCTGCATTATGGGTTTATGTTCTGTGGGTGAAATCTGAGTGA

mRNA sequence

ATGGGAACTAAAATTAAGTTACCTAGTCAAAGCAGTGGTTTATACCAGAAGCAGCCAAGCCAAGGCCAACAGCTACTTTTGATAGTGACAGGACATTTGAGAGCTGTCTGCCCCAACCATGCCTCTTTTCCCCCACCATTCCTGGGCATTTTATCAAACAGGTTGTGGGCAGGAACCTGCGCGCTTGCAATGAAACTGGAGAGTGGTAGAGGCTTGGAGAGGATGAATGCAAACAGCAAAAGGCTGTGTATGAGTTTGTTGTGGAGGGCGAGGGCGGCTTTGAAGAAGGCGATCAAGAACAGAAGCAAACGGCGGCAGCTAAAGTTTCAGTATGATCCCAGTAGCTATGCTCTTAATTTTGACGATGGGCACAGCAAAATCAGCGACGCCATTGTTGATGAAGTTCAGAATTGTGGCCATGTTTACAATTCTGCATTATGGGTTTATGTTCTGTGGGTGAAATCTGAGTGA

Coding sequence (CDS)

ATGGGAACTAAAATTAAGTTACCTAGTCAAAGCAGTGGTTTATACCAGAAGCAGCCAAGCCAAGGCCAACAGCTACTTTTGATAGTGACAGGACATTTGAGAGCTGTCTGCCCCAACCATGCCTCTTTTCCCCCACCATTCCTGGGCATTTTATCAAACAGGTTGTGGGCAGGAACCTGCGCGCTTGCAATGAAACTGGAGAGTGGTAGAGGCTTGGAGAGGATGAATGCAAACAGCAAAAGGCTGTGTATGAGTTTGTTGTGGAGGGCGAGGGCGGCTTTGAAGAAGGCGATCAAGAACAGAAGCAAACGGCGGCAGCTAAAGTTTCAGTATGATCCCAGTAGCTATGCTCTTAATTTTGACGATGGGCACAGCAAAATCAGCGACGCCATTGTTGATGAAGTTCAGAATTGTGGCCATGTTTACAATTCTGCATTATGGGTTTATGTTCTGTGGGTGAAATCTGAGTGA

Protein sequence

MGTKIKLPSQSSGLYQKQPSQGQQLLLIVTGHLRAVCPNHASFPPPFLGILSNRLWAGTCALAMKLESGRGLERMNANSKRLCMSLLWRARAALKKAIKNRSKRRQLKFQYDPSSYALNFDDGHSKISDAIVDEVQNCGHVYNSALWVYVLWVKSE

Homology

[Close]

BLAST of Sed0016146 vs. NCBI nr
Match: KAA0056955.1 (putative Glucose-fructose oxidoreductase domain-containing protein 2 [Cucumis melo var. makuwa] >TYK26382.1 putative Glucose-fructose oxidoreductase domain-containing protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 1.5e-29
Identity = 75/114 (65.79%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 47  FLGILSNRLWAGTCALAMKLESGRGLERMNANSKRLCMSLLWRARAALKKAIKNRSKRRQ 106
           + G+    LWAG    AMK+E  R LERMNA  K+ C SL W+ +AALKKAIKN +K RQ
Sbjct: 11  YKGVFLLMLWAG----AMKMEGSRSLERMNAYGKKQCRSLFWKMKAALKKAIKNGNK-RQ 70

Query: 107 LKFQYDPSSYALNFDDGHSKISDAIVD----EVQNCGHVYNSALWVYVLWVKSE 157
           LKFQYDPSSYALNFDDGHSKI +  V+    EVQ CG+VYNSA WVYVLWVKSE
Sbjct: 71  LKFQYDPSSYALNFDDGHSKIREDNVEAYKFEVQYCGNVYNSATWVYVLWVKSE 119

[Close]

BLAST of Sed0016146 vs. NCBI nr
Match: KGN64641.1 (hypothetical protein Csa_013386 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 8.3e-28
Identity = 69/97 (71.13%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 64  MKLESGRGLERMNANSKRLCMSLLWRARAALKKAIKNRSKRRQLKFQYDPSSYALNFDDG 123
           MK+E  R LERMNA  K+ C SL W+ +AALKKAIKN +K RQLKFQYDPSSYALNFDDG
Sbjct: 1   MKMEGSRSLERMNAYGKKQCRSLFWKVKAALKKAIKNGNK-RQLKFQYDPSSYALNFDDG 60

Query: 124 HSKISDAIVD----EVQNCGHVYNSALWVYVLWVKSE 157
           HS+I +  VD    EVQ CG+VYNSA+WVYVLWVKSE
Sbjct: 61  HSEIREDNVDAYKFEVQYCGNVYNSAMWVYVLWVKSE 96

[Close]

BLAST of Sed0016146 vs. NCBI nr
Match: KAG6584014.1 (hypothetical protein SDJN03_19946, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 64  MKLESGRGLERMNANSKRLCMSLLWRARAALKKAIKNRSKRR-QLKFQYDPSSYALNFDD 123
           MKLE GR LER NA  K+ C++L WR RAALKKAIKN S R+ +LKFQYDPSSYALNFDD
Sbjct: 1   MKLEGGRRLERTNAYGKKQCLNLFWRVRAALKKAIKNGSNRQLKLKFQYDPSSYALNFDD 60

Query: 124 GHSKISDAIVDEVQNCGHVYNSALWVYVLWVKSE 157
           G ++       E+Q+C +VYNSA+  YVLW KSE
Sbjct: 61  GRTRY------ELQHCANVYNSAMRAYVLWGKSE 88

[Close]

BLAST of Sed0016146 vs. NCBI nr
Match: KAG6573243.1 (hypothetical protein SDJN03_27130, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.7 bits (252), Expect = 6.0e-18
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 64  MKLESGRGLERMNANSKRLCMSLLWRARAALKKAIKNRSKRRQLKFQYDPSSYALNFDDG 123
           MKL+   GL RMNA  KR CMSL WR RAALKKAIKN SK R L+FQYDPSSYALNFDDG
Sbjct: 1   MKLKGSIGLARMNAYGKRQCMSLFWRVRAALKKAIKNGSK-RPLRFQYDPSSYALNFDDG 60

Query: 124 HSKISDAIVDEVQNCGH 141
           H+KIS+ I+D+     H
Sbjct: 61  HTKISEDILDDASKYEH 76

[Close]

BLAST of Sed0016146 vs. NCBI nr
Match: MBA0565621.1 (hypothetical protein [Gossypium lobatum])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 72  LERMNANSKRLCMSLLWRARAALKKAIKNRSKRRQLKFQYDPSSYALNFDDG--HSKISD 131
           LE +N+  K+ C SL WRA+AA+KKA+K R  ++Q KFQYDPSSYALNFDDG  HS +  
Sbjct: 11  LEWVNSYGKKQCRSLFWRAKAAMKKALKGRGNKKQFKFQYDPSSYALNFDDGYCHSGVEA 70

Query: 132 AIVD--EVQNCGHVYNSALWVYVLWVKS 156
             ++   +Q+C    N  +WVYVL VKS
Sbjct: 71  NTIELARIQDCSECQNDIIWVYVLRVKS 98

[Close]

BLAST of Sed0016146 vs. ExPASy TrEMBL
Match: A0A5D3DSE1 (Putative Glucose-fructose oxidoreductase domain-containing protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00440 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 7.3e-30
Identity = 75/114 (65.79%), Postives = 85/114 (74.56%), Query Frame = 0


Query: 47  FLGILSNRLWAGTCALAMKLESGRGLERMNANSKRLCMSLLWRARAALKKAIKNRSKRRQ 106
           + G+    LWAG    AMK+E  R LERMNA  K+ C SL W+ +AALKKAIKN +K RQ
Sbjct: 11  YKGVFLLMLWAG----AMKMEGSRSLERMNAYGKKQCRSLFWKMKAALKKAIKNGNK-RQ 70

Query: 107 LKFQYDPSSYALNFDDGHSKISDAIVD----EVQNCGHVYNSALWVYVLWVKSE 157
           LKFQYDPSSYALNFDDGHSKI +  V+    EVQ CG+VYNSA WVYVLWVKSE
Sbjct: 71  LKFQYDPSSYALNFDDGHSKIREDNVEAYKFEVQYCGNVYNSATWVYVLWVKSE 119

[Close]

BLAST of Sed0016146 vs. ExPASy TrEMBL
Match: A0A0A0LXB8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073010 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.0e-28
Identity = 69/97 (71.13%), Postives = 78/97 (80.41%), Query Frame = 0


Query: 64  MKLESGRGLERMNANSKRLCMSLLWRARAALKKAIKNRSKRRQLKFQYDPSSYALNFDDG 123
           MK+E  R LERMNA  K+ C SL W+ +AALKKAIKN +K RQLKFQYDPSSYALNFDDG
Sbjct: 1   MKMEGSRSLERMNAYGKKQCRSLFWKVKAALKKAIKNGNK-RQLKFQYDPSSYALNFDDG 60

Query: 124 HSKISDAIVD----EVQNCGHVYNSALWVYVLWVKSE 157
           HS+I +  VD    EVQ CG+VYNSA+WVYVLWVKSE
Sbjct: 61  HSEIREDNVDAYKFEVQYCGNVYNSAMWVYVLWVKSE 96

[Close]

BLAST of Sed0016146 vs. ExPASy TrEMBL
Match: A0A7J8MLK3 (Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_010486 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 6.0e-16
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 72  LERMNANSKRLCMSLLWRARAALKKAIKNRSKRRQLKFQYDPSSYALNFDDG--HSKISD 131
           LE +N+  K+ C SL WRA+AA+KKA+K R  ++Q KFQYDPSSYALNFDDG  HS +  
Sbjct: 11  LEWVNSYGKKQCRSLFWRAKAAMKKALKGRGNKKQFKFQYDPSSYALNFDDGYCHSGVEA 70

Query: 132 AIVD--EVQNCGHVYNSALWVYVLWVKS 156
             ++   +Q+C    N  +WVYVL VKS
Sbjct: 71  NTIELARIQDCSECQNDIIWVYVLRVKS 98

[Close]

BLAST of Sed0016146 vs. ExPASy TrEMBL
Match: A0A2P5X3J8 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A05G171400v1 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.9e-16
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 72  LERMNANSKRLCMSLLWRARAALKKAIKNRSKRRQLKFQYDPSSYALNFDDG--HSKISD 131
           LE +N+  K+ C SL WRA+AA+KKA+K R  ++Q KFQYDPSSYALNFDDG  HS +  
Sbjct: 11  LEWVNSYGKKQCSSLFWRAKAAMKKALKGRGNKKQFKFQYDPSSYALNFDDGYCHSGVEV 70

Query: 132 AIVD--EVQNCGHVYNSALWVYVLWVKS 156
             ++   +Q+C    N  +WVYVL VKS
Sbjct: 71  NTIELARIQDCSECQNDIIWVYVLRVKS 98

[Close]

BLAST of Sed0016146 vs. ExPASy TrEMBL
Match: A0A5D2QJE3 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A05G177500v1 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.9e-16
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 0


Query: 72  LERMNANSKRLCMSLLWRARAALKKAIKNRSKRRQLKFQYDPSSYALNFDDG--HSKISD 131
           LE +N+  K+ C SL WRA+AA+KKA+K R  ++Q KFQYDPSSYALNFDDG  HS +  
Sbjct: 11  LEWVNSYGKKQCSSLFWRAKAAMKKALKGRGNKKQFKFQYDPSSYALNFDDGYCHSGVEV 70

Query: 132 AIVD--EVQNCGHVYNSALWVYVLWVKS 156
             ++   +Q+C    N  +WVYVL VKS
Sbjct: 71  NTIELARIQDCSECQNDIIWVYVLRVKS 98

[Close]

BLAST of Sed0016146 vs. TAIR 10
Match: AT1G11112.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.4e-04
Identity = 19/30 (63.33%), Postives = 23/30 (76.67%), Query Frame = 0


Query: 94  LKKAIKNRSKRRQLKFQYDPSSYALNFDDG 124
           +K A+K   K++Q  FQYDP SYALNFDDG
Sbjct: 21  MKAAVKKTKKKKQTMFQYDPWSYALNFDDG 50

The following BLAST results are available for this feature:

BLAST of Sed0016146 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056955.1	1.5e-29	65.79	putative Glucose-fructose oxidoreductase domain-containing protein 2 [Cucumis me...	[more]
KGN64641.1	8.3e-28	71.13	hypothetical protein Csa_013386 [Cucumis sativus]	[more]
KAG6584014.1	1.5e-21	63.83	hypothetical protein SDJN03_19946, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6573243.1	6.0e-18	68.83	hypothetical protein SDJN03_27130, partial [Cucurbita argyrosperma subsp. sorori...	[more]
MBA0565621.1	1.2e-15	53.41	hypothetical protein [Gossypium lobatum]	[more]

BLAST of Sed0016146 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0016146 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DSE1	7.3e-30	65.79	Putative Glucose-fructose oxidoreductase domain-containing protein 2 OS=Cucumis ...	[more]
A0A0A0LXB8	4.0e-28	71.13	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073010 PE=4 SV=1	[more]
A0A7J8MLK3	6.0e-16	53.41	Uncharacterized protein OS=Gossypium lobatum OX=34289 GN=Golob_010486 PE=4 SV=1	[more]
A0A2P5X3J8	7.9e-16	53.41	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A05G171400v1 PE...	[more]
A0A5D2QJE3	7.9e-16	53.41	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A05G177500v1 P...	[more]

BLAST of Sed0016146 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11112.1	1.4e-04	63.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34538:SF10	OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 2, PUTATIVE-RELATED	coord: 71..155
None	No IPR available	PANTHER	PTHR34538	EXPRESSED PROTEIN	coord: 71..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0016146.1	Sed0016146.1	mRNA