Sed0016032 (gene) Chayote v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTCTTCCTTGTTTCTTCAAGTTGGCTCTTTTCTTCTTGTTTTTCATCACATTTGTTCCTCCTAAAGCAGGTATGTTGAATCTTAAACAAACCCCACTTTCTTGTTGTTGGTATTTTTCAAACTTGGATTTTGCTTTCCCCATCCACTCTGTTCTTCCATTTGACAATTTCATTACAAGAAAACTTTGAGATTTGAATCAAGTTTAAAACTTTTTACTTGAGTAAATCCACAGCTTCTTCCTTCTTTTTTCCTATTTGATAAATTTTGTTGAAAAATGTCTTGAACTGTTCGATACCTCATGATTACTTAGTTGGGAGTCTCCATATTACTCATTATGAGACTGCACTATATAAACTTTATACGTTATCTCCTTGATAATAATTGTTTTCTCCTCTGTTCGTCGATATAGTTAATACACTGTCGGTGAACCACGTTACTTCTGTGCATTATCCCTCACATTCTTTTTTTACAGTTTTCTTATTGATTGTTGTTGTCGTTTACATAACAAATTTCGATAAAGTTACTTTCTTTTTGACAGTTGGGTTGGGTTGGTCAAGAAGCAGCAGCAGCAGAGGTGAAAGAGAAATTAGTTATGTAGAGGTGGATGAAAAGAAAGTGGTGATTGGTTCGCGGCCGCCGGAGTGCGAGAACAAGTGCCGGAGTTGCAGGCCGTGCACGGCGGCGGCGGTGGTGCCGGAGCCCGGGATGAAGTTTGTTTTCTCTCGAGTGGAAGAAGATAGCTATTATCTTCTCTCCTGGAAATGTCGATGTGGGAATAAGATTTATCAGCCGTAG ATGTCTCTTCCTTGTTTCTTCAAGTTGGCTCTTTTCTTCTTGTTTTTCATCACATTTGTTCCTCCTAAAGCAGGTATCAGCAGAGGTGAAAGAGAAATTAGTTATGTAGAGGTGGATGAAAAGAAAGTGGTGATTGGTTCGCGGCCGCCGGAGTGCGAGAACAAGTGCCGGAGTTGCAGGCCGTGCACGGCGGCGGCGGTGGTGCCGGAGCCCGGGATGAAGTTTGTTTTCTCTCGAGTGGAAGAAGATAGCTATTATCTTCTCTCCTGGAAATGTCGATGTGGGAATAAGATTTATCAGCCGTAG ATGTCTCTTCCTTGTTTCTTCAAGTTGGCTCTTTTCTTCTTGTTTTTCATCACATTTGTTCCTCCTAAAGCAGGTATCAGCAGAGGTGAAAGAGAAATTAGTTATGTAGAGGTGGATGAAAAGAAAGTGGTGATTGGTTCGCGGCCGCCGGAGTGCGAGAACAAGTGCCGGAGTTGCAGGCCGTGCACGGCGGCGGCGGTGGTGCCGGAGCCCGGGATGAAGTTTGTTTTCTCTCGAGTGGAAGAAGATAGCTATTATCTTCTCTCCTGGAAATGTCGATGTGGGAATAAGATTTATCAGCCGTAG MSLPCFFKLALFFLFFITFVPPKAGISRGEREISYVEVDEKKVVIGSRPPECENKCRSCRPCTAAAVVPEPGMKFVFSRVEEDSYYLLSWKCRCGNKIYQP Homology
BLAST of Sed0016032 vs. NCBI nr
Match: KAG6593393.1 (Polygalacturonase, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 131.0 bits (328), Expect = 6.0e-27 Identity = 72/124 (58.06%), Postives = 83/124 (66.94%), Query Frame = 0
BLAST of Sed0016032 vs. NCBI nr
Match: KAG7025740.1 (Polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 130.2 bits (326), Expect = 1.0e-26 Identity = 72/126 (57.14%), Postives = 83/126 (65.87%), Query Frame = 0
BLAST of Sed0016032 vs. NCBI nr
Match: KAE8646441.1 (hypothetical protein Csa_015844 [Cucumis sativus]) HSP 1 Score: 113.6 bits (283), Expect = 9.8e-22 Identity = 65/116 (56.03%), Postives = 75/116 (64.66%), Query Frame = 0
BLAST of Sed0016032 vs. NCBI nr
Match: XP_008461115.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo]) HSP 1 Score: 112.1 bits (279), Expect = 2.9e-21 Identity = 60/116 (51.72%), Postives = 77/116 (66.38%), Query Frame = 0
BLAST of Sed0016032 vs. NCBI nr
Match: KAA0058756.1 (EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo var. makuwa] >TYK10550.1 EPIDERMAL PATTERNING FACTOR-like protein 4 [Cucumis melo var. makuwa]) HSP 1 Score: 111.3 bits (277), Expect = 4.9e-21 Identity = 60/116 (51.72%), Postives = 75/116 (64.66%), Query Frame = 0
BLAST of Sed0016032 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 9.9e-09 Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 0
BLAST of Sed0016032 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1) HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07 Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = 0
BLAST of Sed0016032 vs. ExPASy Swiss-Prot
Match: Q1PEY6 (EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana OX=3702 GN=EPFL6 PE=1 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 2.4e-07 Identity = 23/57 (40.35%), Postives = 29/57 (50.88%), Query Frame = 0
BLAST of Sed0016032 vs. ExPASy Swiss-Prot
Match: Q9FY19 (Polygalacturonase OS=Juniperus ashei OX=13101 GN=JNA2 PE=1 SV=1) HSP 1 Score: 55.8 bits (133), Expect = 3.2e-07 Identity = 24/65 (36.92%), Postives = 33/65 (50.77%), Query Frame = 0
BLAST of Sed0016032 vs. ExPASy Swiss-Prot
Match: Q7M1E7 (Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 4.2e-07 Identity = 22/63 (34.92%), Postives = 30/63 (47.62%), Query Frame = 0
BLAST of Sed0016032 vs. ExPASy TrEMBL
Match: A0A0A0K6C2 (Epidermal patterning factor-like protein OS=Cucumis sativus OX=3659 GN=Csa_7G432570 PE=3 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 4.8e-22 Identity = 65/116 (56.03%), Postives = 75/116 (64.66%), Query Frame = 0
BLAST of Sed0016032 vs. ExPASy TrEMBL
Match: A0A1S3CDZ4 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103499797 PE=3 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21 Identity = 60/116 (51.72%), Postives = 77/116 (66.38%), Query Frame = 0
BLAST of Sed0016032 vs. ExPASy TrEMBL
Match: A0A5D3CGR2 (Epidermal patterning factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002030 PE=3 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 2.4e-21 Identity = 60/116 (51.72%), Postives = 75/116 (64.66%), Query Frame = 0
BLAST of Sed0016032 vs. ExPASy TrEMBL
Match: A0A3Q7Y983 (Epidermal patterning factor-like protein OS=Cicer arietinum OX=3827 GN=LOC113785780 PE=3 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 1.3e-19 Identity = 55/105 (52.38%), Postives = 72/105 (68.57%), Query Frame = 0
BLAST of Sed0016032 vs. ExPASy TrEMBL
Match: K7L7X4 (Epidermal patterning factor-like protein OS=Glycine max OX=3847 GN=102659819 PE=3 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 1.1e-18 Identity = 50/98 (51.02%), Postives = 70/98 (71.43%), Query Frame = 0
BLAST of Sed0016032 vs. TAIR 10
Match: AT3G22820.1 (allergen-related ) HSP 1 Score: 60.8 bits (146), Expect = 7.1e-10 Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 0
BLAST of Sed0016032 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 57.0 bits (136), Expect = 1.0e-08 Identity = 22/56 (39.29%), Postives = 31/56 (55.36%), Query Frame = 0
BLAST of Sed0016032 vs. TAIR 10
Match: AT2G30370.1 (allergen-related ) HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08 Identity = 23/57 (40.35%), Postives = 29/57 (50.88%), Query Frame = 0
BLAST of Sed0016032 vs. TAIR 10
Match: AT2G30370.2 (allergen-related ) HSP 1 Score: 56.2 bits (134), Expect = 1.7e-08 Identity = 23/57 (40.35%), Postives = 29/57 (50.88%), Query Frame = 0
BLAST of Sed0016032 vs. TAIR 10
Match: AT4G37810.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10310.1); Has 149 Blast hits to 149 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 149; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 54.3 bits (129), Expect = 6.6e-08 Identity = 29/77 (37.66%), Postives = 38/77 (49.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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