Sed0015808 (gene) Chayote v1

Overview


Name	Sed0015808
Type	gene
Organism	Sechium edule (Chayote v1)
Description	vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related
Location	LG05: 44808027 .. 44809474 (+)
RNA-Seq Expression	Sed0015808
Synteny	Sed0015808

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCACGTATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGGTATGTTGAGAAAGTTCATCCAAGGCGATTTTATAATGACACCTGATGCAGTTTTCCAGTGTTGTTTCCGATGTGGGACACAATTTAAATGTAGGAGGCGGCTTGCATTGCAATTGGATTTCTACACTTCATCATCAATATATCTTAAACAAAAGCTCGTGTGAAATCATATATGCATTCGAAAAGTTTGAAGAAAAAATCAAATGTTCTTGAGAAAACGCTTCGAGATTATTGCAAATCATCCTCACGATTGTAGTGTAATTTATAAAGTTCATTATATTTAGTTCTCGTCGATTTTATCTTAGATTGTAATGAAAATAAGGGAAAAAGTTAATGCATCTTATTGAAAATAGAGTCTCACAATCTATCTATTGTGAGATCCTCGTAACATGTACCTCAAGATAAAACATTTATGCATGAGCATTAAAAAAATATGAACGAAAACTCAAAACCAATATATTTAAAAAGTTTTTTTTTATTGATATTTGTGATTGTCTAGAGCCAGCTTGTGCGCAACTTGACTAACGTCACTCAACATACCCACTAAACCCTATAATGTTTAGATGTCAAAAAATTTATAGGAAATTAATTTTTAAGTAGGTAGTCGGCATAGATTGAATTCATCATATCTTACCACTTTAAGATCATTTTGACCAATAAATCATTCCATAACGGTTAACATATTTAAAAAGATTGAAATCAAATAAGGAGATCATAAAACACATGTAGACAATTAAAACAGTGTGTATAAAGATGGTCCTGTTGTGAATCCATGAGCTATTTTTTCTAATCAAAGTTCTTTTTCTACATGACAAATAAAACTTAAACTTGAACCAAAGAAGAAACGTTTAACTAAGATTTGGCAATTAGGATGGGGACTTTTTGTCTCTCTTTTGAATTCAACAATAGCAGGAGTTGGTTATATGTGAACGTTTTTGCGATCGTCAAATTTTTAGTCTTAAACTTAGTCTACCTTTTAAACTTTTAGCCTATATTTTAGGCTTTTTAGTTACATCATAATTTGTAGAGATCTCCAATGTGTTTTTTAACCTACATATTTAGTATAGGTAAATTATTTACTAAGCTTAAGAGTGGTCATCAAATTTGAGTAGCAAAACCAACATTAGAAGAATTGAAGAGTCAAAAAGATCGCCCCTTAACATTAGCCAAAGAGGAGGACCAACCTCCAAAGTTTATTGACCCTCTGAAGGTTGGCCGAGAGGAAAATCAAGCCCCAAGATCGATTCCTTGGAGGTCGGCCAAGAGAGAGTCTGACGCAAAAGGTTTGTTGACTCCCCAAGGGTCTACCAAGAGGAGTCCAACCCTCAAGGGGTTTGCCAAGAAGAGGCCCAATCCCTTGGGGGTCGGTCAATAG

mRNA sequence

ATGACCCACGTATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGCAAAACCAACATTAGAAGAATTGAAGAGTCAAAAAGATCGCCCCTTAACATTAGCCAAAGAGGAGGACCAACCTCCAAAGTTTATTGACCCTCTGAAGGTTGGCCGAGAGGAAAATCAAGCCCCAAGATCGATTCCTTGGAGGTCGGCCAAGAGAGAGTCTGACGCAAAAGGTTTGTTGACTCCCCAAGGGTCTACCAAGAGGAGTCCAACCCTCAAGGGGTTTGCCAAGAAGAGGCCCAATCCCTTGGGGGTCGGTCAATAG

Coding sequence (CDS)

ATGACCCACGTATCAGATATTAAACTGATAAGAACAGATACTACACTTGATCTTAGCCAAAAGGCCGAGAAAGCAAAACCAACATTAGAAGAATTGAAGAGTCAAAAAGATCGCCCCTTAACATTAGCCAAAGAGGAGGACCAACCTCCAAAGTTTATTGACCCTCTGAAGGTTGGCCGAGAGGAAAATCAAGCCCCAAGATCGATTCCTTGGAGGTCGGCCAAGAGAGAGTCTGACGCAAAAGGTTTGTTGACTCCCCAAGGGTCTACCAAGAGGAGTCCAACCCTCAAGGGGTTTGCCAAGAAGAGGCCCAATCCCTTGGGGGTCGGTCAATAG

Protein sequence

MTHVSDIKLIRTDTTLDLSQKAEKAKPTLEELKSQKDRPLTLAKEEDQPPKFIDPLKVGREENQAPRSIPWRSAKRESDAKGLLTPQGSTKRSPTLKGFAKKRPNPLGVGQ

Homology

[Close]

BLAST of Sed0015808 vs. ExPASy Swiss-Prot
Match: F4J3H7 (Serine/threonine-protein kinase ZRK7 OS=Arabidopsis thaliana OX=3702 GN=ZRK7 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 4.7e-04
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 1  MTHVSDIKLIRTDTTLDLSQKAEK 25
          M H+SDIKLIRTDTTLDLSQKAEK
Sbjct: 1  MAHISDIKLIRTDTTLDLSQKAEK 24

[Close]

BLAST of Sed0015808 vs. ExPASy TrEMBL
Match: V7AL12 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G190100g PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.4e-04
Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 0


Query: 1  MTHVSDIKLIRTDTTLDLSQKAEK-AKPTLEELKSQKDRPLTLAKE 46
          M H+SDIKLIRTDTTLDLSQKAEK   P +E+L+S K+  +T  KE
Sbjct: 43 MIHISDIKLIRTDTTLDLSQKAEKGTPPRMEDLESNKEPQVTSDKE 88

[Close]

BLAST of Sed0015808 vs. TAIR 10
Match: AT1G16820.1 (vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar proton pump-related )

HSP 1 Score: 45.4 bits (106), Expect = 3.4e-05
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 1  MTHVSDIKLIRTDTTLDLSQKAEK 25
          M H+SDIKLIRTDTTLDLSQKAEK
Sbjct: 1  MAHISDIKLIRTDTTLDLSQKAEK 24

[Close]

BLAST of Sed0015808 vs. TAIR 10
Match: AT3G57770.1 (Protein kinase superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.4e-05
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = 0


Query: 1  MTHVSDIKLIRTDTTLDLSQKAEK 25
          M H+SDIKLIRTDTTLDLSQKAEK
Sbjct: 1  MAHISDIKLIRTDTTLDLSQKAEK 24

The following BLAST results are available for this feature:

BLAST of Sed0015808 vs.


Match Name	E-value	Identity	Description

BLAST of Sed0015808 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4J3H7	4.7e-04	91.67	Serine/threonine-protein kinase ZRK7 OS=Arabidopsis thaliana OX=3702 GN=ZRK7 PE=...	[more]

BLAST of Sed0015808 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
V7AL12	8.4e-04	65.22	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_011G190100g PE=4 ...	[more]

BLAST of Sed0015808 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16820.1	3.4e-05	91.67	vacuolar ATP synthase catalytic subunit-related / V-ATPase-related / vacuolar pr...	[more]
AT3G57770.1	3.4e-05	91.67	Protein kinase superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..111
None	No IPR available	PANTHER	PTHR34892	VACUOLAR ATP SYNTHASE CATALYTIC SUBUNIT-RELATED / V-ATPASE-RELATED / VACUOLAR PROTON PUMP-LIKE PROTEIN	coord: 1..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015808.1	Sed0015808.1	mRNA