Sed0015746 (gene) Chayote v1

Overview


Name	Sed0015746
Type	gene
Organism	Sechium edule (Chayote v1)
Description	Unknown protein
Location	LG04: 7089610 .. 7090048 (-)
RNA-Seq Expression	Sed0015746
Synteny	Sed0015746

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCCATTGGTGTCTCTGTAATAACCTAAACCAATCATGACTCTCAATTGTCTGTCCTGTCAGCGATTGCAGAGATCCGACTCCGACAGAGACACCGGCCACCCGGATTCCCTGATCTCCGACTTCTGGAACTCGCCGGAGAGAAGCTGGTCCGGCAACCTCTCATTCCGCCCGCCGGCAAAGGGAGGGGGGTTGCGGGCGGTGGCGGAGGACAAGGCGGCGCGTGGGGGTCACCGGCGGATTCACAGCACCGGCGGCGTGGACTTCGGCGGGCCGGGGAAGGAGCCGCGGCTGATTCGAAGCTCCGGCATGAGGAGGGATTGGAGCTTTGAGGATCTCACCATCGCCATCAAGGAATCGTCTCCCATTTCCTAACACCTTTTTTTTGAAAACTAACCAACCCCTTTTTTTTTCCTATTCACTATTCATTTTTATTTCCC

mRNA sequence

CCCCATTGGTGTCTCTGTAATAACCTAAACCAATCATGACTCTCAATTGTCTGTCCTGTCAGCGATTGCAGAGATCCGACTCCGACAGAGACACCGGCCACCCGGATTCCCTGATCTCCGACTTCTGGAACTCGCCGGAGAGAAGCTGGTCCGGCAACCTCTCATTCCGCCCGCCGGCAAAGGGAGGGGGGTTGCGGGCGGTGGCGGAGGACAAGGCGGCGCGTGGGGGTCACCGGCGGATTCACAGCACCGGCGGCGTGGACTTCGGCGGGCCGGGGAAGGAGCCGCGGCTGATTCGAAGCTCCGGCATGAGGAGGGATTGGAGCTTTGAGGATCTCACCATCGCCATCAAGGAATCGTCTCCCATTTCCTAACACCTTTTTTTTGAAAACTAACCAACCCCTTTTTTTTTCCTATTCACTATTCATTTTTATTTCCC

Coding sequence (CDS)

ATGACTCTCAATTGTCTGTCCTGTCAGCGATTGCAGAGATCCGACTCCGACAGAGACACCGGCCACCCGGATTCCCTGATCTCCGACTTCTGGAACTCGCCGGAGAGAAGCTGGTCCGGCAACCTCTCATTCCGCCCGCCGGCAAAGGGAGGGGGGTTGCGGGCGGTGGCGGAGGACAAGGCGGCGCGTGGGGGTCACCGGCGGATTCACAGCACCGGCGGCGTGGACTTCGGCGGGCCGGGGAAGGAGCCGCGGCTGATTCGAAGCTCCGGCATGAGGAGGGATTGGAGCTTTGAGGATCTCACCATCGCCATCAAGGAATCGTCTCCCATTTCCTAA

Protein sequence

MTLNCLSCQRLQRSDSDRDTGHPDSLISDFWNSPERSWSGNLSFRPPAKGGGLRAVAEDKAARGGHRRIHSTGGVDFGGPGKEPRLIRSSGMRRDWSFEDLTIAIKESSPIS

Homology

[Close]

BLAST of Sed0015746 vs. NCBI nr
Match: XP_023539506.1 (uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 134.0 bits (336), Expect = 7.8e-28
Identity = 75/117 (64.10%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 1   MTLNCLSCQR-LQRSDSDRDTGHPDSLISDFWNSPERSWSGNLSFRPPAK--GGGLRAVA 60
           M+LNCLSCQ  LQRSDSD+D        +D   SP+RSWSGNLSFRPP +    G R   
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDL-EQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRT 60

Query: 61  EDKAARGGHRRIHSTGGVDFGGPGKEPRLIRSSGMRRDWSFEDLTI--AIKESSPIS 113
           E+K A  GHRR+HSTG V FGGPGKEPRLIRS+GMRRDWSFEDL      KESSP S
Sbjct: 61  ENKVAPTGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREEKESSPNS 116

[Close]

BLAST of Sed0015746 vs. NCBI nr
Match: XP_022952265.1 (uncharacterized protein LOC111454968 [Cucurbita moschata] >KAG6596735.1 hypothetical protein SDJN03_09915, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028271.1 hypothetical protein SDJN02_09452, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 133.7 bits (335), Expect = 1.0e-27
Identity = 75/117 (64.10%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 1   MTLNCLSCQR-LQRSDSDRDTGHPDSLISDFWNSPERSWSGNLSFRPPAK--GGGLRAVA 60
           M+LNCLSCQ  LQRSDSD+D        +D   SP+RSWSGNLSFRPP +    G R   
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDL-EQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRT 60

Query: 61  EDKAARGGHRRIHSTGGVDFGGPGKEPRLIRSSGMRRDWSFEDLTI--AIKESSPIS 113
           E+K A  GHRR+HSTG V FGGPGKEPRLIRS+GMRRDWSFEDL      KESSP S
Sbjct: 61  ENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESSPNS 116

[Close]

BLAST of Sed0015746 vs. NCBI nr
Match: XP_023007608.1 (uncharacterized protein LOC111500186 [Cucurbita maxima])

HSP 1 Score: 110.9 bits (276), Expect = 7.1e-21
Identity = 64/113 (56.64%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MTLNCLSCQRLQRSDSDRDTGHPDSLISDFWNS----PERSWSGNLSFRPP--AKGGGLR 60
           MTLNCLSCQ LQR+DS+RD   PD  + ++++       RSWSGNLSFRPP   K   LR
Sbjct: 1   MTLNCLSCQLLQRTDSERD---PDPQLQNYYSGQIEPSGRSWSGNLSFRPPDRPKKEALR 60

Query: 61  AVAEDKAARGGHRRIHSTGGVDFGGPGKEPRLIRSSGMRRDWSFEDLTIAIKE 108
           A+ ED+A     RR+HS+G +  G   KEP+L+RSSGMRRDWSFEDL  AI+E
Sbjct: 61  ALPEDQAPPVAPRRLHSSGPISLG--SKEPKLVRSSGMRRDWSFEDLR-AIRE 107

[Close]

BLAST of Sed0015746 vs. NCBI nr
Match: XP_023553065.1 (uncharacterized protein LOC111810575 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-20
Identity = 64/113 (56.64%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MTLNCLSCQRLQRSDSDRDTGHPDSLISDFWN----SPERSWSGNLSFRPP--AKGGGLR 60
           MTLNCLSCQ LQR+DS+RD   PD  + ++++       RSWSGNLSFRPP   K   LR
Sbjct: 1   MTLNCLSCQLLQRTDSERD---PDPQLQNYYSVQIEPSGRSWSGNLSFRPPDRPKKEPLR 60

Query: 61  AVAEDKAARGGHRRIHSTGGVDFGGPGKEPRLIRSSGMRRDWSFEDLTIAIKE 108
           A+ ED+A     RR+HS+G +  G   KEP+L+RSSGMRRDWSFEDL  AI+E
Sbjct: 61  ALPEDQAPPVAPRRLHSSGPISLG--SKEPKLVRSSGMRRDWSFEDLR-AIRE 107

[Close]

BLAST of Sed0015746 vs. NCBI nr
Match: KAG6577703.1 (hypothetical protein SDJN03_25277, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015746.1 hypothetical protein SDJN02_23384, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.8 bits (268), Expect = 6.0e-20
Identity = 64/113 (56.64%), Postives = 78/113 (69.03%), Query Frame = 0


Query: 1   MTLNCLSCQRLQRSDSDRDTGHPDSLISDFWN----SPERSWSGNLSFRPP--AKGGGLR 60
           MTLNCLSCQ LQR+DS+RD   PD    ++++       RSWSGNLSFRPP   K   LR
Sbjct: 1   MTLNCLSCQLLQRTDSERD---PDPQHQNYYSVQIEPSGRSWSGNLSFRPPDRPKKEPLR 60

Query: 61  AVAEDKAARGGHRRIHSTGGVDFGGPGKEPRLIRSSGMRRDWSFEDLTIAIKE 108
           A+ ED+A     RR+HS+G +  G   KEP+L+RSSGMRRDWSFEDL  AI+E
Sbjct: 61  ALPEDQAPPVAPRRLHSSGPISLG--SKEPKLVRSSGMRRDWSFEDLR-AIRE 107

[Close]

BLAST of Sed0015746 vs. ExPASy TrEMBL
Match: A0A6J1GL99 (uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC111454968 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.9e-28
Identity = 75/117 (64.10%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 1   MTLNCLSCQR-LQRSDSDRDTGHPDSLISDFWNSPERSWSGNLSFRPPAK--GGGLRAVA 60
           M+LNCLSCQ  LQRSDSD+D        +D   SP+RSWSGNLSFRPP +    G R   
Sbjct: 1   MSLNCLSCQLFLQRSDSDKDL-EQHEYFTDQAKSPDRSWSGNLSFRPPTRQNSDGFRVRT 60

Query: 61  EDKAARGGHRRIHSTGGVDFGGPGKEPRLIRSSGMRRDWSFEDLTI--AIKESSPIS 113
           E+K A  GHRR+HSTG V FGGPGKEPRLIRS+GMRRDWSFEDL      KESSP S
Sbjct: 61  ENKVAPMGHRRLHSTGAVAFGGPGKEPRLIRSAGMRRDWSFEDLRAIREDKESSPNS 116

[Close]

BLAST of Sed0015746 vs. ExPASy TrEMBL
Match: A0A6J1L834 (uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.4e-21
Identity = 64/113 (56.64%), Postives = 79/113 (69.91%), Query Frame = 0


Query: 1   MTLNCLSCQRLQRSDSDRDTGHPDSLISDFWNS----PERSWSGNLSFRPP--AKGGGLR 60
           MTLNCLSCQ LQR+DS+RD   PD  + ++++       RSWSGNLSFRPP   K   LR
Sbjct: 1   MTLNCLSCQLLQRTDSERD---PDPQLQNYYSGQIEPSGRSWSGNLSFRPPDRPKKEALR 60

Query: 61  AVAEDKAARGGHRRIHSTGGVDFGGPGKEPRLIRSSGMRRDWSFEDLTIAIKE 108
           A+ ED+A     RR+HS+G +  G   KEP+L+RSSGMRRDWSFEDL  AI+E
Sbjct: 61  ALPEDQAPPVAPRRLHSSGPISLG--SKEPKLVRSSGMRRDWSFEDLR-AIRE 107

[Close]

BLAST of Sed0015746 vs. ExPASy TrEMBL
Match: A0A0A0L198 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.2e-20
Identity = 67/121 (55.37%), Postives = 76/121 (62.81%), Query Frame = 0


Query: 1   MTLNCLSCQRLQRSDSDRDTGHPDSLI-----SDFWNSPERSWSGNLSFRPPAKGG---- 60
           M+LNCLSCQ LQR+DS+R   H D  +     SD +NS ERSWSGNL  RP   GG    
Sbjct: 1   MSLNCLSCQILQRTDSER---HRDRQVQTYYTSDEFNSSERSWSGNLCLRPNRGGGGGGG 60

Query: 61  --GLRAVAEDKAARGGHRRIHSTGGVDFGGPGKEPRLIRSSGMRRDWSFEDLTIAIKESS 111
             G R +A++K A  GHRR      V FG  GKEPRLIRSSGMRRDWSFEDL    +E  
Sbjct: 61  GRGFRGMADNKVAPIGHRR-----AVSFG--GKEPRLIRSSGMRRDWSFEDLRAIREEKQ 111

[Close]

BLAST of Sed0015746 vs. ExPASy TrEMBL
Match: A0A5A7UAS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001620 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.5e-18
Identity = 62/115 (53.91%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 1   MTLNCLSCQRLQRSDSDRDTGHPDSLISDFWNSPE-----RSWSGNLSFRPPAKGGGLRA 60
           M+LNCLSCQ LQR+DS+R   H D  I  ++ S E     RSWSGNLS R   +GG  R 
Sbjct: 1   MSLNCLSCQLLQRTDSER---HRDRQIQTYYTSDEFDPSQRSWSGNLSLR-QNRGGVFRG 60

Query: 61  VAEDKAARGGHRRIHSTGGVDFGGPGKEPRLIRSSGMRRDWSFEDLTIAIKESSP 111
           +A++K A   HRR      V FG  GKEPRL+RSSGMRRDWSFEDL    +E  P
Sbjct: 61  MADNKVAPVCHRR-----AVSFG--GKEPRLVRSSGMRRDWSFEDLRTIREEKEP 104

[Close]

BLAST of Sed0015746 vs. ExPASy TrEMBL
Match: A0A1S3BJN6 (uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.5e-18
Identity = 62/115 (53.91%), Postives = 73/115 (63.48%), Query Frame = 0


Query: 1   MTLNCLSCQRLQRSDSDRDTGHPDSLISDFWNSPE-----RSWSGNLSFRPPAKGGGLRA 60
           M+LNCLSCQ LQR+DS+R   H D  I  ++ S E     RSWSGNLS R   +GG  R 
Sbjct: 1   MSLNCLSCQLLQRTDSER---HRDRQIQTYYTSDEFDPSQRSWSGNLSLR-QNRGGVFRG 60

Query: 61  VAEDKAARGGHRRIHSTGGVDFGGPGKEPRLIRSSGMRRDWSFEDLTIAIKESSP 111
           +A++K A   HRR      V FG  GKEPRL+RSSGMRRDWSFEDL    +E  P
Sbjct: 61  MADNKVAPVCHRR-----AVSFG--GKEPRLVRSSGMRRDWSFEDLRTIREEKEP 104

[Close]

BLAST of Sed0015746 vs. TAIR 10
Match: AT2G35215.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G46770.1); Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-11
Identity = 43/103 (41.75%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 1   MTLNCLSCQRLQRSDSDRDTG--HPDSLISDFWNSPERSWSGNLSFRPPAKGGGLRAVAE 60
           M+LNCL+C  LQR+DSDRD G     S   +F  S       N S  P            
Sbjct: 1   MSLNCLACHILQRTDSDRDMGSRKDSSFKENFATSAFEKMVRNRSSLPVV---------- 60

Query: 61  DKAARGGHRRIHSTGGVDFGGPGKEPRLIRSSGMRRDWSFEDL 102
            +    GHRR++S   + + G   EP+L+RSSG+RRDWSFEDL
Sbjct: 61  -RRVNKGHRRLYSADIMVY-GELDEPKLVRSSGIRRDWSFEDL 91

[Close]

BLAST of Sed0015746 vs. TAIR 10
Match: AT5G46770.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-08
Identity = 42/119 (35.29%), Postives = 61/119 (51.26%), Query Frame = 0


Query: 1   MTLNCLSCQRLQRSDSDRDT-----GHPDSLISDFWNSP-------ERSWSGNLS---FR 60
           M+LNCLSCQ L R+DS++D      G P   I++             R+WSGNLS   + 
Sbjct: 1   MSLNCLSCQALPRTDSNKDVDLSGPGPPRVEINNVLGKTCCVNPIGGRNWSGNLSPRIYE 60

Query: 61  PPAKGGGLRAVAEDKAARGGHRRIHS-TGGVDFGGPGK--EPRLIRSSGMRRDWSFEDL 102
              + G   A    K  +  H R+    G      P +  +P+L+RS+G+RR+WSFE+L
Sbjct: 61  KIGRPGSSLAHKMKKVKKIHHVRLSGPVGSSPSNVPTRPEQPKLVRSTGVRRNWSFENL 119

The following BLAST results are available for this feature:

BLAST of Sed0015746 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023539506.1	7.8e-28	64.10	uncharacterized protein LOC111800149 [Cucurbita pepo subsp. pepo]	[more]
XP_022952265.1	1.0e-27	64.10	uncharacterized protein LOC111454968 [Cucurbita moschata] >KAG6596735.1 hypothet...	[more]
XP_023007608.1	7.1e-21	56.64	uncharacterized protein LOC111500186 [Cucurbita maxima]	[more]
XP_023553065.1	1.6e-20	56.64	uncharacterized protein LOC111810575 [Cucurbita pepo subsp. pepo]	[more]
KAG6577703.1	6.0e-20	56.64	hypothetical protein SDJN03_25277, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Sed0015746 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0015746 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GL99	4.9e-28	64.10	uncharacterized protein LOC111454968 OS=Cucurbita moschata OX=3662 GN=LOC1114549...	[more]
A0A6J1L834	3.4e-21	56.64	uncharacterized protein LOC111500186 OS=Cucurbita maxima OX=3661 GN=LOC111500186...	[more]
A0A0A0L198	2.2e-20	55.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G011635 PE=4 SV=1	[more]
A0A5A7UAS3	3.5e-18	53.91	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BJN6	3.5e-18	53.91	uncharacterized protein LOC103490783 OS=Cucumis melo OX=3656 GN=LOC103490783 PE=...	[more]

BLAST of Sed0015746 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35215.1	1.9e-11	41.75	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G46770.1	3.3e-08	35.29	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..90
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..30
None	No IPR available	PANTHER	PTHR36019	PLANT/PROTEIN	coord: 1..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015746.1	Sed0015746.1	mRNA