Sed0015541 (gene) Chayote v1

Overview


Name	Sed0015541
Type	gene
Organism	Sechium edule (Chayote v1)
Description	selenoprotein F-like
Location	LG09: 3695483 .. 3710017 (+)
RNA-Seq Expression	Sed0015541
Synteny	Sed0015541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAATTATAAAAGTAACGAAAATTAATAATTTCTACGGAATTGGGTTTTTCCAGTCAGTTTTCTGGTCGTCACTGAAGTTTGCATCTTCACCCACAATCGGCGGCGAACACAGAGATGCAGCTTCTCACCGGCGTAAAGTTTCCGTTCACGGCGGCGGCAGCTATACTTTTGATCGCGTCAATGCCGCTGACTTGGTCAACGGAGCAGCTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGGTGATTTTCTCGATTCACCGCTCAATCGGTTTTCCTATACGCATACATACTGGATTTGGTTTTGAATTTATATCGTTGTTTTTGCATTTTTTTCCCTTTTCGAAGCTGTTTGTATTAGAGAACATGGATTCCACCTCAAAACCAATCCAAGTAACCCATATCTCTTATAAATGCTTATAAGACTCTACCACTTTTCAATGTGAGATATTTGTGAGACCCTAACATACCCACTCAAGATGGTGTCTATTTTGGGCTCACCAATCTTGAATCGGATCTCAATTTCATTTTTATTGCACTGATGCCCATTTGGGCTTTATGGGCTCTGATACATATTAAAGAATACGAGGTTCCATCTCAAAACTAATTGGCTATTAAGGGAGTAACCCATATCTTTGATATCGATGTTGAACTCTCCCATTTTCCAATGTGGACATTTGTGACATCCTAACATGCCTCCTCAAGATGACGTCTTTTTTTGGGTTCACGCTCACCGATCTTGAATCAGATCTCAATTTCATTTTTATTGGACCGATACCCGTTTGAGTTTTATGAGCTCTGATACCATATTAGATACCATATTTGAGAATATGGGGTTCCACCTCAAAACCAATTGGTAATAGGGGAGTAACTGATATCTCTTTTATATTGATGTTGGTTCTCCCACTTTCCAATGTTGGGACAATTTTGAGATCCTAACAGTTTGTCGTGAATTCGCTCATCTGTTTTCTCAATTCTCTGAATTTTTGTTTGATTTTGATCGATTGATTGTTCGTCTTGTGGTTAGTTTATGGATTTTTTTTGCTTGTCATGGATTTTGGATTTCGAGATTACTATGTTGTAGTCTAATTGATGTGTTAAGCTTTGGTATTAATTTCGGTAAATTCAACTAAATTTCTTATTGGTTATGGATAGAATTATCTAAGTTAGTTCTTATTTTGTGCGAAGATGCTGTACTGATGAATTGAAAGACCTGTACCTAGTACCTAGTTCATGTCACACTGACTAATTAACACATTTTTGCACTAATATTTGAAACTCCGCGATTTCCTGGTAATTTGTTAGGGAATATGGCGGTTCATTCTGATATAATAGTTAATCATTTTGTCTAATTTGTTAGATAGATTAAAAAACTGTTTGCAGAGATCATATTAGGGGAAGAAAAAAGTTGGGGAAGGATAAAGTTTTCAACATTTTAAAGTTATTGATTTTCTGATTTGTTGATTATGTTTTCCCCCCTCCAGATATCGTGTATCGTGAACGTTTTAAAGTTTTCAACATTTTAAAGTTGTGATTAATGCAATTTTTGATTGTTTGGTCCAGTTCTTCTGGTGAATAAGTTTATTTTTAATTAGTACAATGACTTTGTATGATAAAAAATCTGGCAATGACTTTCTGTGTGGAAAAGGAAACATCCTTGTTTAATTGCTAAGCCCCACCATAATTTTAGAGGCAAAGATATAAGGAGGTTTTTTGAACTATTTTGAGAAAAAGTTGTTTGTATGAGACGTCTGATGTCTTACACCTCCTGAGTCCTTACTATGATTTCTGTTTGAATTCAACTACAATTGTGGAAAAGAGGACTCGAACCCATGGTCTCTTAGTCATAAGAATACATTGATGTTGCTGAGCTATTGCTCTTGTCATCAACCTCCTGACTATGGTTGGGAATGTCTAGAGTGTGCTGGGGAGAAGGGATTCCCATTGTTGGGTTTCCAACCCTCTCGAGGGCTTTTCCTCTAAGTCCTTTTTTGAGTGCATCGTTAGCCCCCTCCCGGTTTTAGCTGAGTAGGGAAATTATGAGTTTGCCTCGATCTAGAAGTTGAAAATTCAAAAGAAGGTAAAATTCTTTATCTGGCAGGAGGTTTTACACGAAAGGGCGAATACTTTGGATAGGGTAATGTGGAAATTGCCCAATTTGATGGGTTCATGTTGTTGTATTATTTGTAGGAGGGGAGCTGAAGACCCGTTTCATGGTTTGGAATAGATTGTTTTTAAGTTCGATTTTTCTTTTGCTAGGCCTTGGGATTGTTATTGTATGGTCATTGAATGTTTAGGCTATCCCCCTATCGTTAGAAGAGAAAGGAAATTTTTTGTGGGGGAATAAGTGTTTTCAAAGCGCAAGGCGATACTCTCCTTGGTCACCTCAAAGCGAGAGGCGATAAAAAGGCGAGGCCCGAGTGAAGAGAGGCTCATTTATAAATTGATAATAAAACATATGTGTATTTCCATAAAAATTCAAATTCATATGGAAAAATACTAAAAAGTAAAAAATAAAAGAATAATAAATCACAAAAATTATGCTATTATAAGATATACCATAATATTAAATTATTATTTGTAAAAAAAAAATTGAAGTTAACTAAAAGTATAAAAAAATAAAGATTCTACATCAAATAACTCGAATAAACAGATACACATATATTTGAAATAGCAATTAAATAAATTTAGTATCCTTAATAAAGACTTCGCATAGTTGTTGGACTTCTTCATTAACTAATTCTAGGTTCTTTTTGTGGATATTAAAGTAGGATATTGATAAATAAATAAAACTTTAACAAGGCGCACGCCTTGGCCTGAGGCGAAGGCAATGCAGGGCGCAAAATGGCGAGGAAAGGCGAGGGCGATTGAAGGAACTCACCTCAGCTACGTTAGAGGCGCAATACCTGCCTATGCGCAAGGCGATGGCCATAAGCGAGGAAAGGCGGTGGCCTTGAAAACACTGGGGGGAATAGAAACTATAGCATCGTTAAAGGGAGAGAAACAATAGAATCTTTAAAAGGAGAGAAAGATTCCCCGAGGGTATAAGGGAGAGAAACAATAGAATCTTTAAAAGGAGAGAAAGATTCCCCGAGGGTATATTGTCCCTTATTAGATTCTATGTTTATCTTTGGATTTCGGTGACAAATCTGTTTTTTTATTATTCTTTAGGCTAGATCTTGTTGGTTTGGAAGCCGTTTTTGCAGACTCCTTCCTTATTTTGTGGGTTTTCTTTTTTGTATGCTTGTATATCTTTCATTTTTATCTCAATGAAAGTTTGGATGTTTATAAAAAAAAAGTTTTGAAAACATCTTCAAATATTTTTTTAAATACATCTATTTCTTAGTTCTGCTTTTACATACATCTATTTCTTAGTTAAATGGAAGATATTCTTTCTTCCTAAGTCATGTACTTGTAAGTATTGATTCCAAGTGCCGGGTAAACTTGGGAATTTATTGCAAGTCATCTGATCATATCTCTTAGAGGGTGTTTGTTTTAAGGAATTAACAAGCTATTAGAAATGACATTTTACGACTGTTCTTTAAACAATTATATCCAAACGAGCTATTATAATCATTCAAAATAATCACTCATTTTTAACCACTAAAAATAATCATTCATTTCTAATCATTCATATCTAATCATTCATTTATAACCAGTGGTTATTAACCACTCATTTTTAACCTCTCAAAATAATCACTCATTTCTAACCACATTCAAACAAGTTATTGTCCAGAACTCCTCTACAAAAACAATAATTCAAACAAGCTATTAACTGCAACCCCTCTACAAATAACCACATCTAAACGCGATTAATAAAACTTAAATTTCTAATCACTCAAAATAATCGCTCTACAACTTCACATCCAAACACCTTCTTAAAGAACAGGAAGCTGTTTTTCTCGACTATCTCCGAGTAGCCATATTTGCTAGATGCAAAATGCCAAAGGTGTTGGTTGGAGAAATCATTTTCTAATAAAGGCACTCTACAATTCTACCTGCCCCCTTCTCTTCCAATTCCAATCACAAATCTTAAAACACAGTTTATTAGGTAGCAGTAACCCAGGCCTTGGGAGGAGTGCGCGTGCCCCCAGTCTGTAGTGGGGTGAAGCTCAAATTTTATGTCACAAAAAAAATAATAATAGCGGTAACCTGTTTTTCAAAATAGCACCAGCCCAACACTTTTTGGCAGAAATAAGAAAATGCCAAGGCAGTTGGATGGAGGAAATCTTTCTGCATGCATCAAACTAGTTCTATTAATTGAACATCATTCTTCTAAAAGCATCCCCTATAGTCTCCAGGGGTGGCACAGTGGTTGAAGACTTGGGTTTTGAGGGTATGCTCCCCTCAATGTCCTAGGTTTGAGATTCACCTGTGACATTACTCCTTTGATGTCTCTGGTGCTTGGCTTAGGAACGAGTGTGGTTACCCTTGTATAAAAAAAAAAGGAAAAGCACCCCATAGAATCATTACCTCCACCCACCACTCCTACTGCGTTATGTGACTGCTTTTGGAAAAAAGAGATAGGTTGCAAGGTGTTGAGTTAAGATAACCTATTGCCTTTTAGCATCATAGTTAATAAAGAACGTGTGGTAAGTGACTCAGTGGTGTGAGTTTATAACTGAGTTCTGCTGAATAACATGGAAAAAATAAAAAATGTGAATGTGATAACCCCAAATGAAAATTCTGGCAACACTGGATTTGCAAGGCAACGTAATAACTTCAAATAGTGTTTGTCCAAGATCCAAAAGAAAATAACTGATAGTATGCAGGATCTACAGTTGTCTCGTGTCAGTTTATGTAATGTAATAGGTTTTGAAGTGTGTTATCTTTAAGATTACAGCTGTCCTCATTCACAAATTTCGATTGCAGAATTAGTGTCGGATTGTTTGAAGTGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGGTACACAAAATGTTTTAGATGCTGGATTTCATTTACTATTCAATTGTGAATAATGTTTTGTTCTTCTAAACTGAGTGGTTGTACATCCCTGTGATAGACGAACAACTGAACGCACATTAATTAGTTTAAGAAGAAAACTTGCCTACTTGTCTAGTTGACACCTACATATTATGTAAGACTAACAATTTATGCCTCAAATGCAGTAAGAAGGAAAAACCCCTCCATCAAACACATCTCTCTCTCCCCCTAAACCCCTCTTCACGTTCGGACTTTGCCCACCCGTCCTCCTCCGATGAACACCTGTTCATCACCGCCGTCACTAACATGGACAAGCCAAGGTGTTTGCATAAAGGCATCGTCGAGAGAACGACCTAGGGGATGTTTGAGGAATGAGAATGATTATGGGAGAATAAGAATTAGGGGGAGAGTAAGAAAGAGAATGATTATTTGTGTTTGGGATGAAGAGAATGATTATGGGGAGAATGATTATTTGTTTTTGAGGTGAAGGGAATGATTATAGTAAAAATAAAATAATGAATATGATGAGAGAGAAAAATAGTGATGGATGCATAAAGAGTTGTTATTGAGAGAATGAAAAGTAGCTAAGAGAATAATGAAAAGGTGATTTTTGAAAATCGCAATTATAAGGTGAATGATTGCCGGTGGCCCAAATACGGGGAATCATTTTCATTCCCATTCTCCCTCTTTTTCTTGATGGCATAAACACACCCCTATTGTGTCGATGTGGATACTCATTTCAGAGCTCTCAGACTCAGGATTACTGAAGTTTCAAGAGACAAAGCATACTTTATTACACTCCATTTGTCAACCTTGCAATGGATGTTGAAGACTTTCCTCAGAATGATCGATCACCCGCTCAACCAAAAATTCTTTGCAGAGGGAAGAATTGATGACCAGACATCTGGGTAGAAAAGTTTCAGAACAGAAGAAGTATAGTGGTAGAAGTTACCAAGATGAGCATAAATGGTGGTTCTAACAAGCTTGTGGTAACCCATTGGAGAAGAAAAAAGAGGATGGAAAGCTTTTAAAGCACTTCTTATCAACTCAAAATAGCCTTCATTACAAGATGAGAAAAAGAACCCCCCTCAAAAGGTTCCTTCACTAACCTTATCGGCGCCATTAAAGCACATTAATGTTCAGGGGAAGGCTACATACAACCATGTTCTTCAAAGGGATAAACAACCAGTAAAGTCTTTCATTGGTCTCCATAATGGGGCATTTTTTTTTAAACAAGGGTAACCATGTCCATTCCTAGGCCAGACACCGAGAGACATCGAAGGAGTAATGTCATAGGTGAGTCTCGAACCTGGGATCTTGAAGGCATAATGAGGGCATTTATTGACTCAGAAGAACAAGGAACAATATAAAGAGGTGTTTGTCAAAAGGAATCAACATAGGCGCTTCGGCTTTTCTAAACCAAAACCCATCTACCGACCCAAAATCTTCCCATCTTCCCCTCTCCTCCTGGGGTACAACATTCTGTTCTCAGCTCTCACATCTTTCCTCCTCTGTTATCCTCTACAGAGCCATGACGGGTGGTCATCTATAAAAAGCTTGATTCATGGTATTAGGGGAAATTTGTTCCATCAACCCTTTCATGGCTGATCAGGCACTGGTCTCTAGAGGACACAAATGTTTGGACTACGTGAAAAAACATTTTTCAAGTTGGAACACGTTGAGAGTGTGTTTGTGGCAAGGGGAATGATAATGATTAAGGGGGAATGGTAATGAGGAGGAGAATGATTATGGGGGTAATGGTTATTTGTGTTTGGGGTGAAGGCCCTTGGAGAGCTAATTTTCTAACAAACTAACAGATTTACAGAGCTAATTTTCTAATTCTCTAATAATTACTCTAATATTTGGAGATACGATAAAGAAGAAAAAACATGAGGGAGAAATGTATTGACGCTAATTACGAGTCTACGAACCCCATTAAACTGCAAAACTCTGGGCAAAAGATCCTTAAACACAGCCAAAGGCCCTTGGAGAGCTATCGTGAATCATTCCTGCCTCATTCTTGACAGGTTCTCTCATGGGGTCAAGGATGGTGCTAATACCGGATTTTGGAAGAATAGATGGCTCAATGGTGATGTTCAATGTAACAGATTTCTCAACCAAAAGAGATGGGACTATTCAACAATTATGGGATCCTATCCTTAATTATTCGAACTTGGGGGTGAGAAAGAACCTCAAAGATGATGAGATTAATGAATTGGGAGAGCTATCCCTATTGCTTACTGAGGCTCCGTTTGATAATCATTTCGTTTTTGGTTTTTTGTTTATGAAATTTAAGCCTATTTCTACTCAAATTTTCTATTATGTGCTCCATCTTTCCTACAATATATCCATCTTTCCTTAAGAAAGTAGGTGAATACTAACCAAATTTCAAAAAACAATAACAAGCTTTCGGAAGTACTTTTTTTTTTGTTTCCAAATTTTGGTTTAGTTTCTTAAAATATAGGTAGGATGTAGACATCCAAATAAGAAAAAAGCTATAATAAGGTGATGGTTGTTGACTTAAATTTCAAAAACAAAAAACGAAAAACAAAATGGTTATCAAACGGGGCCTGATTTTTCCCCGTCTACCCCGTCTACCGGTAAAGATGAGCTTCTTTGGCATCCTGATCCAAAGATGCCTTACATGATGAACTCCCCACACATTTGTTTGTCCTTTGTAGAATGCATGAAGAATCACAGCGCCATCTTTTTATCTACTGCACCTATGCTAGCAATTTCTGGGATGATATTAGATTAGCTTTTAATTGGTCCTTTGTTATGCCTGGCGACTTTGGCAGTACGCTCAACACTCAACAGTGCCTTGCTTGGGCACAGGACACCCATTCAAAAAGAAAAATAAAGCACTGTGGGTAGTGTGCTGGAACGTTTTGCTGGAACGAAATAGACGCTTTTTTCAAGATACTGATTTTGCTAGATTCTTTGATAACATTGTCTTATTGGCTGTTACTCTGGTGTAAATAGTTTTGACACTGATAGAGTACTAAGAGTAGGATGGGTATATTATATGTAAGGGTAGAATAGTAATTAGCATGTAAGGGTTTTATTCTAAATAGGAGTCTTAGAGTATTTGGAAAGGAAGGAAAATATTTTGGTATTATTGTCTTGTTGCTTGTTCAACAAGTTGGGAGAGTGTAGCCCTCTCGAAAGACTATTGGGAGAGACTTAGCCCTCTCGAAAGGCTAAGGGTACGGTATTGTAATCTCTATCTATTATCAATATAGTGTTCCTCGTGTGTTCGGTTTATCATCATTTCGATATTAGTTCTCTTATGCTTGTTAAGATTATTAGTGTCTTAACAAATTGGTATCAGAGCAAGTTCTCTCCTCGGGCAACCATAAGCAATGGATCGTGAGGAAGCCTTGTGGGAGATACACGCCTCTATGACCAAACAAAATGAAAGGTGGGAAGAAATGAAGCAAGCTGAAGGTGATCCAAGAACATTTAGAGAAAATGCAAAAGCAGTTGGAGATTTGTAGCCAACTAAAGGGGAAAAAGATGGAAAAAAAGGAGCTGAATAGAGAAAAAGAAGAAGACAAACCAACATGAACAACAATGAGCAACAAATCTGTCCAACAAGTATCCAGCAGAGACAAAGACCAAGAGAATCACATAAATAAAGTGTGCATAAACAAAAAGGGTTGGAAGAAGAGCAACGAGAAATATGGAAGAAGAAAAGAGAAGTTTGATCGTGTACCACCCAACAAGAGTGGGCAACAAAAGAAGAGGACATTCAAGCGTCGGGTAAGAAAATGGCGACGAAGGAATGTACAACCGAAGAAAAAAGTTCGAAAGAGAAGAAGAAAACGAGGGAGACCATGTCGGGCGATTACAAGGGCGGTTGAAAATGAAGCCGTGAAGAAATGTGATATGATCCAGGATCTAGATTATATCAAAAGATAAAAAAATAAAGATAAACCAAGTTTTGATAGGAACTTGGAACCTCCCTTCTCAAGAGAATCTCTTGAGCCCTTACAATAAATCACTCAATAACTCATTTAACAATTGGATGCCTAAACTCTAACCTAACCCACTCTATTTATAACAAAATACTAACTTATTCTCCAAGTAATGGCTAAATAGAGCCCTAGGCCCAACCTTATCAATACCGCCTTTTTAAGCACCTTGTCCTCAAGGTGGGCATAAACAAAAATAGATTTTTTTTTTTTTTTTTTTTTTTTTCCGGCGCAAAGAAAGTGCAGCGTCGGTGGTGGAGGCAGCAGCGATGGAGGTGGTGGTGATGACGATGAGCGGCAACACCGGTGGTGGTGGCGGCGGCGATGTCGGAGGTGGTGACGGTGGAGATGGCGGCGGCGATGTTAGAAGTGGTGGCGGCGATGGTGGTGGCGGAGGTGGTGGGCGGCGGCGGCAGCGCCAGCAGTGGGGTTGGTGATGGTGGCGGAGGTAGGGGCAGCGGCGCAAGAACGACGGTGGGGAAGGCGGAGGCGGCAACGGAGGAGGCGGTGGTGGCGGGTCAAAACCCTAGCCGTCATTGTTTTTCCAACCTAATTTCCTCCCTAAAACATCGTTTTAGGTCATTAAAACTCTCCTTTAGGTCTTCTCTAATTTCTTTTTTTAGAGAAGCTACCTCTTCTCTGAGGTCTTTTTTCAAGTCCACCATCAAACTTTGCAACTTTTCTTGAATGAAACGAAGAACCTCTTGATCCATCTCTACAACCAAGAATTGAACGGCTCTGATACCAATTGATATGATCCAGGATCTAGATTATATCAAAAGATAAAAGAATAAAGATAAACCAAGTTTTGATAGGAACTTGGAACCTCCCTTCTCAAGAGAATCTCTTGAGCCCTTACAATAAATCACTCAATAACTCATTTAACAATTGGATGCCTAAACTCTAACCTAACCCACTCTATTTATAACAAAATACTAACTTATTCTCCAAGTAATGGCTAAATAGAGCCCTAGGCCCAACCTTATCAAAATGGTGGTTAGAGATGAAGCAAAATAGTAGACATTGTTTGTGGTCGGAAAAGAAGAGGCATGAGTTAGTAATGGAGAAGAAAGCCCGGAAAAGAAGGAAGAAGAAATGTTTAAGAAGAAGATGGAAGTCTAGAAAAAGGAAAAAAATGGTGAGTATGAGAAGTGGAGAAGAAAGGAAAAAGAAAGAAGAAATGTTTGAAGAGAGGGAAGTCTAAGAAAGGAGGGAAAAAAGGGGAGCCCATGTGTGAGCATTAATGGGAGAAGTGAATTTTTTTATGGAAATTGAAAATGTGACATTTTGTTGATGGGAAAGAAATGTGGTTGCATTAATGAGGTTGTGATGGGACAAGATCCTTATCTTGTTGCAAGTAGGGTGGCATTTTTGGGTATGAAAAAAAAAAAAAAATCTGCATTTTAATTTGTTGTGCAATAGGATAATTTTTTTTTGTAATGTGTTGTATAACCCACACCTTGAGGACAAGGTGTATTTCACGATGGGGGATATGATAGAATACTAAGAGTAGGATGGGTATATTATATGTAAGGGTAGAATAGTAATTAGCATGTAAGGGTTTTATTATAAAGAGGAGTCTTAGAGTATTTGGAAAGGAAGGAAAAATATTTTGGTATTGTCTTGTTGTCTTGTTCAACAAGGTGGGAGAGTGTAGCCCTCTCGAAAGGCTATTGGGAGAGACTTAGCCCTCTCGAAAGGCTAAGGGTACGGTATTGTAACCTCTATCTATTATCAATATAGTGTTCTCGTGTGTTCCGTTTATCATCATTTCAATTTTAGTTCTATTGTGCTTGTTAAGATATTAGTGTCTTAACAGACATCCCCCTATCTAATTGGAGAGGCCTCTTGTAATCCCCCTTGGGTGATTGGATTTATTAGGAGTTTAGAGAGGTGAAGAGAGGAAATTATTCAATCCCTTGTTTGTTTTTTTTGTACATAACGACCTCTCTCAATTCCTCTCCATCTCCTCCTCACATCCCATCAAACATATTTAATCCTACAAAATATCAAATCAAACTTTATTACAATAAAAATTAATATAAAATAAAAAAATTTCTCTCTTAAACACCAATTCCCAAAAAAAAAAATCGACATCTCTTTTCAAAACACAAATTCCCAAAAAAAAAATTCTAACATTTGCTCTCCAAAACATCAATTCCCAAACAAATACTTCCTTTCCTCTCTTCTCCCAAACTCCAAAATCCAATCACCCCCTTAGGGTTATACTCTTCTTTTGTAATTTCTTACATTAATGAAATTGTTTCTTATCCAAAAAAAAGAAAACAATTTATGCCTCCATGTATTATCACAACCGTGGTTCGAAATAAGGTTTCAGTAAACAAGGAAAACTAACCTACCTTTTGAAAAATGTGGTTCAAGATATGTGCAACGCATTTATCAATGCATATCACAACCTTGTTGAACATTGAGTCATGAGTGGTTAGAAATACATGGCGTGGATGAGCAAGTCTATCCACTTCCTTGATAAATTACCATTAGTTCGTAATTCATAGTATTTTAATATTCTTTTATTAGAGTTTATGCTTGCACTGATTTTATTTTTTTAGTATTGTTCTCTTTTCATTTTATCTCTCTCTCTTTCTCTTAATTTTTTATATTTTAATATCTGTGAGGTTGTGAGTGTCTGGTGCACTTGACCCTGTAATATTTGATTGTCAATTCAATAAAACCCGTAGAAAATTAATTCTTAGATAGGTGACCACCACGTATTTAACCTATAACTTCTAGATAAATAACCTTATAATATTTGGTTGTCAACTTCTTAGTTCGCCAACAATAGTAGTAGCTCGACCGAAAGGGTTGGTGGCGCGTTAGTTTCATTGTTTGGTATTAATTCAGTTTAATACCATGGTCACGGGTTCAATACTAGAAATCGGTATTCGGCTCTCATTTATTTGAGAGTAGTAGCACCCTTTATGTAGGGTTTGTGGTCCCCCTCCCCAAATTGTTCTAAAAAAAGAAAACAAGAGTAGTAGCTCGTATTAGTTTGTTCCCATGAATAAGATTCCAAGAGATTATAAGTTCGAATCCCTTCTCCTACAATTGTAGTTGAACTAAAAAAACGTCTTCTTAACCAATAGGTCGGCTCATGATGGTTAGTCTATTTATATATATATATATATATATATATATATATATATATATATATATCTGTGCTCGAAACTCTCAGTATCTGACAGTTACTTATTCACAATAGTTACTCTTTTCCATCTCATGGGAAGGAAAGCCTGTTGTTCCACTTGGCTCGACATATCTCTACGATGTTACTGTCAAATACCTTATTACAAATTCCCACCTTCCTTTGATTACAGTATCTCAAAACAAATTCTTGTTTCAAAATTTTGTCCACCATGGTTGTGGTTTGAGAAAAATTCCTGTTGTACATCTCGAATATAGAGCCTATCGATTGAGTTTCGAGTCCTACCCTCCCCCAAATTCAGTACACTTTTGTTGGTTGCATTTCATAACTATTTGCATTTTGAGTCTTTTCATACATTTTGACAAAGAATGGAAACCTATTGACTAAGTTCACTGACCACAGATAACTTATTCTGGTGCTGTTGTGGAGGTCTGCATGAGGAAGCTAGTTTTCTACCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAGTTCCCTTCCGTTAAGGTTCAATATATATTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAAGGCCAACATAAAGAGAGCATCAGGTAACTTAAGTACCCAAAATTTTCGGGTGTAAATGTTAGGGGAGGTGTCTGTTTGCCATATTTAAGGAGGATTTAGATGGAGGATTTACTAACTTCTTCTCGAAAACTTACATCCAAACAAGTTTTTACTAACTCTTCCTTTTTAATTTTAAAAATAACTTCTCATTTCTAACAATTCATTTATGGTAATTCATTTTTAACTATTCAATCATTTCTAACCACTCATTTCTAACCATTCATTTCACATCAATCAAAATAACTCATTTTTAACCATTTATTTTTAATCATTCATTTTTTAACTACTCAAAATAACTCTTCAAGCTACATCCAAACAGAGTTTCGACTCTAATACCTCTACACATAAACCACATCCAAACGAGTTTTTGGCTACAACTCTTAATTTTTAACTACTCAAAATAACTCCTCAAGCTAAATCCTCCTTAAATATGGTAAACAAACACCCCCTTAATGCTTATTTACGAGGATTTTTCCAGAGGAGCAAAAAGAAAGGGAAAAGGTTTTTACACGTCAAAAATTTAGAAAGATTCAAACATAGTAAAAATTGATTCAATTAAGTTAAATTGATAACCACAAAATTGAAAGTTTCAATCAATTGAAATTGATAAGTTTGATAGACTTCAATCAAGTGAAACTTGAATAAATAGACTTCAATCAAGTTAAAGTAAGAAATATTTTTAAAAAGTTCTATATTTAAAACAAAGATGGTCGAATTTGCTATCAACCAAACCACATTCTTGTAAGGTAAACTAAATGTAAAGCCAGAATACAAAATTGAAACTAAAGTTTCAAAAAGGATCTCTTATTTCTACGGTAGACGTTGATGTTTGCCCGACCAAATGAATGATTTTTTATATTGTCTAGAAGAATACTTGCATCCATATTATCATATTAAACTAAATGATCTTATGGGAAAATTTTATGAGGGCATACTGCGCATATATGGAAGGAGAGGAATACTTTCGATAGATTTATGGACAACATTACCATTACTGTGGTTTCTGGATCAAACTTTATCCACTTTTTGACAAGTATAGCTATGACTCTCTTACTAACAATTGGAGAGCTCTTTTGTACTACTACGAGGACCATTTTGTCTTTGTAATTTCATAATCATAATGAAATTGTTTCTTATCTAAGTTTTTAAGGGGTGATGCAATTGGATTTTGAGGGTATGTTTCTTTCAAAATCTTTCTTATCCAAGTCCCCAAGGGATGGTGCAGTAGTTGAAAACTTGGATTTTGAGGGTATGCTCTGCTCCTCTCTCAAGGTCCTAGGTTCGAGAGTCAGCTGTGACATTACTCCTTCGATGTCTTCGGTACCTGGCTTAAGGATGGGCGTGATTGCCTTGTTTTAAAAAAAAAATTATTTCTTATCCAAAAATATGTTGATATTATATCTCAAAGAAAATCGTGTTAGTGAATGAAGAACATGTTGAGGTTAAGATGGTGTAGACAAGTGCGATATAGCTTTTACTTTTGCCACACTGATTATTTGATATGCTATTTTTTTTTTTTTTTTTGTTGCAGGATCGACAATTGGAAACGTGAACATATTTTGCAGTTTCTGCAAGAGAAGGTTAAGCGTTCTTCAGCAATTTAAGGTTTTCTTTTTATAATCTCTGTAAAAAAAACATATTTGAAAAGAGAATCTCTGTAAAAAAAACATATTTGAATAGAGAATTGATGTATTATGTATACCCACCACCTGTTTGTGAGGATCTCTCTAAACTGTTTTCAACTTGATTAGGAAAGGTTGGGGAAGAAGATAAAAGAAGGGAGAGAGAGAGA

mRNA sequence

ATAAATTATAAAAGTAACGAAAATTAATAATTTCTACGGAATTGGGTTTTTCCAGTCAGTTTTCTGGTCGTCACTGAAGTTTGCATCTTCACCCACAATCGGCGGCGAACACAGAGATGCAGCTTCTCACCGGCGTAAAGTTTCCGTTCACGGCGGCGGCAGCTATACTTTTGATCGCGTCAATGCCGCTGACTTGGTCAACGGAGCAGCTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGAATTAGTGTCGGATTGTTTGAAGTGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCTGTTGTGGAGGTCTGCATGAGGAAGCTAGTTTTCTACCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAGTTCCCTTCCGTTAAGGTTCAATATATATTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAAGGCCAACATAAAGAGAGCATCAGGATCGACAATTGGAAACGTGAACATATTTTGCAGTTTCTGCAAGAGAAGGTTAAGCGTTCTTCAGCAATTTAAGGTTTTCTTTTTATAATCTCTGTAAAAAAAACATATTTGAAAAGAGAATCTCTGTAAAAAAAACATATTTGAATAGAGAATTGATGTATTATGTATACCCACCACCTGTTTGTGAGGATCTCTCTAAACTGTTTTCAACTTGATTAGGAAAGGTTGGGGAAGAAGATAAAAGAAGGGAGAGAGAGAGA

Coding sequence (CDS)

ATGCAGCTTCTCACCGGCGTAAAGTTTCCGTTCACGGCGGCGGCAGCTATACTTTTGATCGCGTCAATGCCGCTGACTTGGTCAACGGAGCAGCTCAGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCTGATTGCCACACTTTAGCTGAATACATCAAAGATCAAGAATTAGTGTCGGATTGTTTGAAGTGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCTGTTGTGGAGGTCTGCATGAGGAAGCTAGTTTTCTACCCTGAAATTGTTGGCTTCATTGAAGAAGAAAAGGATAAGTTCCCTTCCGTTAAGGTTCAATATATATTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAAGGCCAACATAAAGAGAGCATCAGGATCGACAATTGGAAACGTGAACATATTTTGCAGTTTCTGCAAGAGAAGGTTAAGCGTTCTTCAGCAATTTAA

Protein sequence

MQLLTGVKFPFTAAAAILLIASMPLTWSTEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCTEDSDDATSKITYSGAVVEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI

Homology

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BLAST of Sed0015541 vs. NCBI nr
Match: XP_038875398.1 (selenoprotein F [Benincasa hispida])

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 151/171 (88.30%), Postives = 157/171 (91.81%), Query Frame = 0


Query: 1   MQLLTGVKFPFT------AAAAILLIASMPLTWSTEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV+ P T      AA  ++ IASMPL WS EQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVRNPATAVTMAVAATVVIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCTEDSDDATSKITYSGAVVEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQELV+DCLKCCTEDSDDATSKITYSGAV+EVCMRKLVFYPEIVGFIEEEKD+FP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 166
           SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI
Sbjct: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 171

[Close]

BLAST of Sed0015541 vs. NCBI nr
Match: KAG6592972.1 (Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 299.7 bits (766), Expect = 1.6e-77
Identity = 150/171 (87.72%), Postives = 155/171 (90.64%), Query Frame = 0


Query: 1   MQLLTGVKFPFTA------AAAILLIASMPLTWSTEQLSSRECEDLGFTGLALCSDCHTL 60
           MQL T VK P T       AAAI+ IASMPL WS EQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 32  MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 91

Query: 61  AEYIKDQELVSDCLKCCTEDSDDATSKITYSGAVVEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQELV+DCLKCCTEDSDDATSKITYSGAV+EVCMRKLVFYPEIVGFIEEEKDKFP
Sbjct: 92  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 151

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 166
           SVK+QYIFNSPPKL LLDDEGQHKESIRIDNWKREHILQFLQ+KVK SSAI
Sbjct: 152 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 202

[Close]

BLAST of Sed0015541 vs. NCBI nr
Match: KAG7025384.1 (Selenoprotein F [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 299.7 bits (766), Expect = 1.6e-77
Identity = 150/171 (87.72%), Postives = 155/171 (90.64%), Query Frame = 0


Query: 1   MQLLTGVKFPFTA------AAAILLIASMPLTWSTEQLSSRECEDLGFTGLALCSDCHTL 60
           MQL T VK P T       AAAI+ IASMPL WS EQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCTEDSDDATSKITYSGAVVEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQELV+DCLKCCTEDSDDATSKITYSGAV+EVCMRKLVFYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 166
           SVK+QYIFNSPPKL LLDDEGQHKESIRIDNWKREHILQFLQ+KVK SSAI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Sed0015541 vs. NCBI nr
Match: XP_023513576.1 (selenoprotein F-like [Cucurbita pepo subsp. pepo] >XP_023513577.1 selenoprotein F-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.5 bits (763), Expect = 3.5e-77
Identity = 149/171 (87.13%), Postives = 155/171 (90.64%), Query Frame = 0


Query: 1   MQLLTGVKFPFTA------AAAILLIASMPLTWSTEQLSSRECEDLGFTGLALCSDCHTL 60
           MQ+ T VK P T       AAAI+ IASMPL WS EQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQVFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCTEDSDDATSKITYSGAVVEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQELV+DCLKCCTEDSDDATSKITYSGAV+EVCMRKLVFYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 166
           SVK+QYIFNSPPKL LLDDEGQHKESIRIDNWKREHILQFLQ+KVK SSAI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Sed0015541 vs. NCBI nr
Match: XP_008460012.1 (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 297.0 bits (759), Expect = 1.0e-76
Identity = 149/171 (87.13%), Postives = 155/171 (90.64%), Query Frame = 0


Query: 1   MQLLTGVKFPFT------AAAAILLIASMPLTWSTEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV  P T      AAAAI+ I+SMPL WS EQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCTEDSDDATSKITYSGAVVEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGAV+EVCMRKLVFYPEIVGFIEE+KD+FP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 166
           SVKVQY FNSPPKLILLDDEGQHKESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of Sed0015541 vs. ExPASy Swiss-Prot
Match: A8YXY3 (Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-19
Identity = 54/147 (36.73%), Postives = 85/147 (57.82%), Query Frame = 0


Query: 18  LLIASMPLTWST--EQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCTEDS 77
           LL+A++  T S    + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++
Sbjct: 17  LLLATVLQTVSALGAEFSSESCRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEA 76

Query: 78  DDATSKITYSGAVVEVCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDE 137
              T K+ Y+GA++EVC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD 
Sbjct: 77  QFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFKGLQIKYVRGSDPVLKLLDDS 136

Query: 138 GQHKESIRIDNWKREHILQFLQEKVKR 162
           G   E + I  W  + + +FL EK++R
Sbjct: 137 GNIAEELSILKWNTDSVEEFLSEKLER 161

[Close]

BLAST of Sed0015541 vs. ExPASy Swiss-Prot
Match: O60613 (Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4)

HSP 1 Score: 95.5 bits (236), Expect = 5.9e-19
Identity = 49/132 (37.12%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 31  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCTEDSDDATSKITYSGAVVE 90
           + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA++E
Sbjct: 35  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILE 94

Query: 91  VCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKRE 150
           VC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 95  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 154

Query: 151 HILQFLQEKVKR 162
            + +FL EK++R
Sbjct: 155 SVEEFLSEKLER 164

[Close]

BLAST of Sed0015541 vs. ExPASy Swiss-Prot
Match: Q802F3 (Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 49/132 (37.12%), Postives = 77/132 (58.33%), Query Frame = 0


Query: 31  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCTEDSDDATSKITYSGAVVE 90
           +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA++E
Sbjct: 23  ELSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILE 82

Query: 91  VCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKRE 150
           VC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 83  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 142

Query: 151 HILQFLQEKVKR 162
            + +FL EK++R
Sbjct: 143 SVEEFLSEKLER 152

[Close]

BLAST of Sed0015541 vs. ExPASy Swiss-Prot
Match: A1Z623 (Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.3e-18
Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 0


Query: 31  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCTEDSDDATSKITYSGAVVE 90
           + SS  C +LGF+   LC  C  L ++   Q L  DC  CC E++   T K+ Y+GA++E
Sbjct: 32  EFSSESCRELGFSSNLLCGSCDLLGQFDLLQ-LDPDCRGCCQEEAQFETKKL-YAGAILE 91

Query: 91  VCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKRE 150
           VC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 151 HILQFLQEKVKR 162
            + +FL EK++R
Sbjct: 152 SVEEFLSEKLQR 161

[Close]

BLAST of Sed0015541 vs. ExPASy Swiss-Prot
Match: Q923V8 (Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 0


Query: 31  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDCLKCCTEDSDDATSKITYSGAVVE 90
           + SS  C +LGF+   LCS C  L ++     L   C  CC E++   T K+ Y+GA++E
Sbjct: 32  EFSSEACRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEEAQFETKKL-YAGAILE 91

Query: 91  VCMRKLVFYPEIVGFIEEEKDK-FPSVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKRE 150
           VC  KL  +P++  F+  +K K F  ++++Y+  S P L LLDD G   E + I  W  +
Sbjct: 92  VCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTD 151

Query: 151 HILQFLQEKVKR 162
            + +FL EK++R
Sbjct: 152 SVEEFLSEKLER 161

[Close]

BLAST of Sed0015541 vs. ExPASy TrEMBL
Match: A0A6J1GQK6 (selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111456577 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.0e-77
Identity = 150/169 (88.76%), Postives = 156/169 (92.31%), Query Frame = 0


Query: 1   MQLLTGVKFP---FTAAAAILLIASMPLTWSTEQLSSRECEDLGFTGLALCSDCHTLAEY 60
           MQLLTGVK P    T A AI+ IASMPL WS EQLSSRECEDLGFTGLALCSDCHTLAEY
Sbjct: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60

Query: 61  IKDQELVSDCLKCCTEDSDDATSKITYSGAVVEVCMRKLVFYPEIVGFIEEEKDKFPSVK 120
           IKDQELV+DCLKCCTEDSDDATSKITYSGA++EVCMRKLVFYPEIVGFIEEEKD+FPSV 
Sbjct: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVN 120

Query: 121 VQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVK-RSSAI 166
           VQY FNSPPKLILLDDEGQHKESIRIDNWKREHILQFL+EKVK RSSAI
Sbjct: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

[Close]

BLAST of Sed0015541 vs. ExPASy TrEMBL
Match: A0A1S3CC00 (15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.0e-77
Identity = 149/171 (87.13%), Postives = 155/171 (90.64%), Query Frame = 0


Query: 1   MQLLTGVKFPFT------AAAAILLIASMPLTWSTEQLSSRECEDLGFTGLALCSDCHTL 60
           MQLL GV  P T      AAAAI+ I+SMPL WS EQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCTEDSDDATSKITYSGAVVEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQELV+DCLKCC EDSDDATSKITYSGAV+EVCMRKLVFYPEIVGFIEE+KD+FP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 166
           SVKVQY FNSPPKLILLDDEGQHKESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of Sed0015541 vs. ExPASy TrEMBL
Match: A0A6J1KPJ2 (selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111497549 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.5e-77
Identity = 149/171 (87.13%), Postives = 153/171 (89.47%), Query Frame = 0


Query: 1   MQLLTGVKFPFTA------AAAILLIASMPLTWSTEQLSSRECEDLGFTGLALCSDCHTL 60
           MQL   VK P T        AAI+ IASMPL WS EQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCTEDSDDATSKITYSGAVVEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQELV+DCLKCCTEDSDDATSKITYSGAV+EVCMRKLVFYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 166
           SVKVQYIFNSPPKL LLDDEGQHKESIRIDNWKREHILQFLQ+KVK SSAI
Sbjct: 121 SVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Sed0015541 vs. ExPASy TrEMBL
Match: A0A6J1HA08 (selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111460968 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.5e-77
Identity = 148/171 (86.55%), Postives = 154/171 (90.06%), Query Frame = 0


Query: 1   MQLLTGVKFPFTA------AAAILLIASMPLTWSTEQLSSRECEDLGFTGLALCSDCHTL 60
           MQL   VK P T       AAAI+ +ASMPL WS EQLSSRECEDLGFTGLALCSDCHTL
Sbjct: 1   MQLFADVKKPATVVAMAAWAAAIIFMASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELVSDCLKCCTEDSDDATSKITYSGAVVEVCMRKLVFYPEIVGFIEEEKDKFP 120
           AEYIKDQELV+DCLKCCTEDSDDATSKITYSGAV+EVCMRKLVFYPEIVGFIEEEKDKFP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 166
           SVK+QYIFNSPPKL LLDDEGQHKESIRIDNWKREHILQFLQ+KVK SSAI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of Sed0015541 vs. ExPASy TrEMBL
Match: A0A6J1JXH9 (selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111488731 PE=3 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 5.5e-76
Identity = 149/169 (88.17%), Postives = 155/169 (91.72%), Query Frame = 0


Query: 1   MQLLTGVKFP---FTAAAAILLIASMPLTWSTEQLSSRECEDLGFTGLALCSDCHTLAEY 60
           MQLLTGVK P    T A AI+ IASMPL WS EQLSSRECEDLGFTGLALCSDCHTLAEY
Sbjct: 1   MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEY 60

Query: 61  IKDQELVSDCLKCCTEDSDDATSKITYSGAVVEVCMRKLVFYPEIVGFIEEEKDKFPSVK 120
           IKDQELV+DCLKCCTEDSDDATSKITYSGA++EVCMRKLVFYPEIVGFIEEEK +FPSV 
Sbjct: 61  IKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKYQFPSVN 120

Query: 121 VQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVK-RSSAI 166
           VQY FNSPPKLILLDDEGQHKESIRIDNWKREHILQFL+EKVK RSSAI
Sbjct: 121 VQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI 169

[Close]

BLAST of Sed0015541 vs. TAIR 10
Match: AT1G05720.1 (selenoprotein family protein )

HSP 1 Score: 247.7 bits (631), Expect = 6.6e-66
Identity = 115/157 (73.25%), Postives = 142/157 (90.45%), Query Frame = 0


Query: 8   KFPFTAAAAILLIASMPLTWSTEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVSDC 67
           K    +A  IL++AS     + EQLS++ECEDLGF+GLALCSDCH+L+EY+KDQELVSDC
Sbjct: 8   KMVVLSAMMILILAS--TISAKEQLSTKECEDLGFSGLALCSDCHSLSEYVKDQELVSDC 67

Query: 68  LKCCTEDSDDATSKITYSGAVVEVCMRKLVFYPEIVGFIEEEKDKFPSVKVQYIFNSPPK 127
           LKCC +DS+D+ SK+TYSGA++EVCMRKLVFYPEIVGFIEEEK+KFPSVKVQYIFNSPPK
Sbjct: 68  LKCCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQYIFNSPPK 127

Query: 128 LILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSA 165
           LI+LD++G+HKESIRIDNWKREH+LQ+++EKVK ++A
Sbjct: 128 LIMLDEDGEHKESIRIDNWKREHLLQYMREKVKPTAA 162

The following BLAST results are available for this feature:

BLAST of Sed0015541 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875398.1	1.4e-78	88.30	selenoprotein F [Benincasa hispida]	[more]
KAG6592972.1	1.6e-77	87.72	Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7025384.1	1.6e-77	87.72	Selenoprotein F [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023513576.1	3.5e-77	87.13	selenoprotein F-like [Cucurbita pepo subsp. pepo] >XP_023513577.1 selenoprotein ...	[more]
XP_008460012.1	1.0e-76	87.13	PREDICTED: 15 kDa selenoprotein [Cucumis melo]	[more]

BLAST of Sed0015541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8YXY3	2.0e-19	36.73	Selenoprotein F OS=Bos taurus OX=9913 GN=SELENOF PE=2 SV=2	[more]
O60613	5.9e-19	37.12	Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4	[more]
Q802F3	1.3e-18	37.12	Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2	[more]
A1Z623	1.3e-18	37.12	Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2	[more]
Q923V8	1.5e-17	36.36	Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3	[more]

BLAST of Sed0015541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQK6	5.0e-77	88.76	selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111456577 PE=3 SV=1	[more]
A0A1S3CC00	5.0e-77	87.13	15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1	[more]
A0A6J1KPJ2	6.5e-77	87.13	selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111497549 PE=3 SV=1	[more]
A0A6J1HA08	6.5e-77	86.55	selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111460968 PE=3 SV=1	[more]
A0A6J1JXH9	5.5e-76	88.17	selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111488731 PE=3 SV=1	[more]

BLAST of Sed0015541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05720.1	6.6e-66	73.25	selenoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014912	Selenoprotein F/M domain	PFAM	PF08806	Sep15_SelM	coord: 87..159 e-value: 2.4E-28 score: 98.1
IPR038219	Selenoprotein F/M, thioredoxin-like domain superfamily	GENE3D	3.40.30.50		coord: 86..159 e-value: 1.0E-26 score: 95.0
None	No IPR available	PANTHER	PTHR13077:SF8	BNAANNG25340D PROTEIN	coord: 17..163
IPR039992	Selenoprotein F/M	PANTHER	PTHR13077	SELENOPROTEIN F	coord: 17..163
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 70..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015541.1	Sed0015541.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005788	endoplasmic reticulum lumen
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016491	oxidoreductase activity