Sed0015420 (gene) Chayote v1

Overview
NameSed0015420
Typegene
OrganismSechium edule (Chayote v1)
DescriptionUnknown protein
LocationLG01: 15139118 .. 15140740 (+)
RNA-Seq ExpressionSed0015420
SyntenySed0015420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGTCACTGAATTGAAATGTCCTATTTTGCATAAGATTCTCTCTTTTTTTTTTCCTCTCAATATATAATTTTTAATTTAATTTTAATTTGGTAATTCATTCTCTACCCTATAAATAGCTCTCACATTCATATTGTTTCTTCATCTCACTAACAAAGCATCTCTCTTTGTTCTCTATCTCTCTTATTTTCCTCTTTCCTTTTTTGTGTTAAAACTCCCCTTTTCTTCTTCAATGGCCACTGTTGAGGTAACCCCCATTTATATCTCTCTCTTTAAAAGTTTTAATTTTATATTTTAAGAAGGCTTCAGTCCCTTTGATCATCAATTATAAACAATTAATTTATATTCCCTTTAATAAAAAAGGTCATACGTTCAAATCCCTCGTCTTGAATTCTCGTAGAACTATGTTAATTTGCTTAATTTTAGACACCCATTTGAACATGGAGTCTTTATCTTCGATAGATCTAGATTGATCCAAATGTGTTAGATCAAGTACTAGCAATGACCAAATTTTATGTTCTAACATTTTCTTTTTAATATTTGGAATTTTTTGGATGAATTAGAAAATAATATCTTTTTAACTTTTCATTTAGTGTTGACTAGTCTTTTTTTAATTTCTTCTTTTGTTTTTTTATGTCTTGATTTTATTTTGTTATTTCTCAAAACTAGAGAAAATTATAAGTCATACTTTCTCCATTTTGATCTCCTTCCATAGCTTGACATTATTTTTGAATGAAACTCAATTTTTCTTTTGTTTTTTTTTCCAAAGTTCATACTAATATTATATTAGATAATTAATTTATAATTTTTTTTTTTCATCTTTTCAATGTGAGATACTCAACGTGTCATATTGGATTTTATAGGTTGAGACATCAGTTACAGCTTTGTCGGAAACCACGGAGGTGCCGGAGGTGGTCAAGACGGAGGAGAGTGTCCCAGAAGAACAGCCAGCCAGTGAAGAAGCTCCGGCGGCTGAGCCAGCCGTCGTAGAAGAACCAAAGCCTGAAGCTACAGAGCCAGAACAAGAAGACAGCAAGGTTTGTGTTAACATTTTAAGAATGAAAAAGATTGTATATAAAAGAAAGTGATTAATAAATTTTCTGGATTGATCACCTGCAGGAAAGTGAACCGGTCGAAGCTCCGGTTGAAGCCGCCGAGCCAGTAGAGGAACTCAAAGTTGAGGAGGAAGAGAAGAAAGAAGAAGCCGTGCCTGCAGTAGAAGAGCCAAAGGCCGAGGAGCCTGCAGCCCCCGAACCGGAGGCGGTGGAGCCTGCTGCCGAACCCGAGGCTGCCGCAGCAGAGGAAGAGAAACCAGTTGAAGAAGAGAAGCCAGCTGAGGTTGCAGAAGAGAAGAATGAAGAATAGAGATCAGATGGAAAAAAACAGCCACCATCAGCTTTGTGGGTCAATTAGTTTAATTTATGTGCTGTTTTTCTTTTCTTCTTTGATTTTCTATTGGTTTATTGAGGTTTTATGAGTTGGAAATATCTGAATTATTAAGAAAGTTGGATGATGTATTTTGGAGTCCTTGAAGGATTTGGCTGTTATTAATGGGGTTGAAGATGTTTTGATCTCAACTTCTAAGAGTAATATTATTAAATTTGATCAATATTTGGTTTGAGATC

mRNA sequence

GTGTCACTGAATTGAAATGTCCTATTTTGCATAAGATTCTCTCTTTTTTTTTTCCTCTCAATATATAATTTTTAATTTAATTTTAATTTGGTAATTCATTCTCTACCCTATAAATAGCTCTCACATTCATATTGTTTCTTCATCTCACTAACAAAGCATCTCTCTTTGTTCTCTATCTCTCTTATTTTCCTCTTTCCTTTTTTGTGTTAAAACTCCCCTTTTCTTCTTCAATGGCCACTGTTGAGGTTGAGACATCAGTTACAGCTTTGTCGGAAACCACGGAGGTGCCGGAGGTGGTCAAGACGGAGGAGAGTGTCCCAGAAGAACAGCCAGCCAGTGAAGAAGCTCCGGCGGCTGAGCCAGCCGTCGTAGAAGAACCAAAGCCTGAAGCTACAGAGCCAGAACAAGAAGACAGCAAGGAAAGTGAACCGGTCGAAGCTCCGGTTGAAGCCGCCGAGCCAGTAGAGGAACTCAAAGTTGAGGAGGAAGAGAAGAAAGAAGAAGCCGTGCCTGCAGTAGAAGAGCCAAAGGCCGAGGAGCCTGCAGCCCCCGAACCGGAGGCGGTGGAGCCTGCTGCCGAACCCGAGGCTGCCGCAGCAGAGGAAGAGAAACCAGTTGAAGAAGAGAAGCCAGCTGAGGTTGCAGAAGAGAAGAATGAAGAATAGAGATCAGATGGAAAAAAACAGCCACCATCAGCTTTGTGGGTCAATTAGTTTAATTTATGTGCTGTTTTTCTTTTCTTCTTTGATTTTCTATTGGTTTATTGAGGTTTTATGAGTTGGAAATATCTGAATTATTAAGAAAGTTGGATGATGTATTTTGGAGTCCTTGAAGGATTTGGCTGTTATTAATGGGGTTGAAGATGTTTTGATCTCAACTTCTAAGAGTAATATTATTAAATTTGATCAATATTTGGTTTGAGATC

Coding sequence (CDS)

ATGGCCACTGTTGAGGTTGAGACATCAGTTACAGCTTTGTCGGAAACCACGGAGGTGCCGGAGGTGGTCAAGACGGAGGAGAGTGTCCCAGAAGAACAGCCAGCCAGTGAAGAAGCTCCGGCGGCTGAGCCAGCCGTCGTAGAAGAACCAAAGCCTGAAGCTACAGAGCCAGAACAAGAAGACAGCAAGGAAAGTGAACCGGTCGAAGCTCCGGTTGAAGCCGCCGAGCCAGTAGAGGAACTCAAAGTTGAGGAGGAAGAGAAGAAAGAAGAAGCCGTGCCTGCAGTAGAAGAGCCAAAGGCCGAGGAGCCTGCAGCCCCCGAACCGGAGGCGGTGGAGCCTGCTGCCGAACCCGAGGCTGCCGCAGCAGAGGAAGAGAAACCAGTTGAAGAAGAGAAGCCAGCTGAGGTTGCAGAAGAGAAGAATGAAGAATAG

Protein sequence

MATVEVETSVTALSETTEVPEVVKTEESVPEEQPASEEAPAAEPAVVEEPKPEATEPEQEDSKESEPVEAPVEAAEPVEELKVEEEEKKEEAVPAVEEPKAEEPAAPEPEAVEPAAEPEAAAAEEEKPVEEEKPAEVAEEKNEE
Homology
BLAST of Sed0015420 vs. NCBI nr
Match: XP_022142401.1 (uncharacterized protein LOC111012542 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 1.0e-16
Identity = 90/149 (60.40%), Postives = 102/149 (68.46%), Query Frame = 0

Query: 1   MATVEVETSVTALSETTEVPEVVKTEESVPEEQPASEEAPAAEPAVVEEPKPEATEPEQE 60
           MA+VEVE+SV  L E  E PE  K EE  PE QPASEE+P AEPA VEEPKPEATE +Q 
Sbjct: 1   MASVEVESSVANLPENVEAPE-AKVEEKSPEVQPASEESPVAEPADVEEPKPEATEADQ- 60

Query: 61  DSKESEPVEAPVEAAEPVEELKVEEEEKKEEAVPAVE-----EPKAEEPAAPEPEAVEPA 120
                +  +AP EA E  EE +VEEEEKKEEA  A        P AEEP A E +  EPA
Sbjct: 61  ---AVQSAKAPEEAVEAAEEPRVEEEEKKEEAAEAESVDKEAVPAAEEPKAEESQTAEPA 120

Query: 121 AEPEAAAAEEEKPVEEEKPAEVAEEKNEE 145
           AEP AAA E+EKPVE+EK AEVAEEK++E
Sbjct: 121 AEPAAAAVEDEKPVEKEKAAEVAEEKSQE 144

BLAST of Sed0015420 vs. NCBI nr
Match: XP_038895685.1 (cytochrome c1-like [Benincasa hispida])

HSP 1 Score: 87.8 bits (216), Expect = 8.2e-14
Identity = 90/151 (59.60%), Postives = 99/151 (65.56%), Query Frame = 0

Query: 1   MATVEVETSVTALSETTEVPEVVKTEESVPEEQPASEEAPAAEPAVVEEPKPEATEPEQE 60
           MAT EVE++ T L ET E PEVVK EE  PEEQPA+E  P AE A VE+PKPE  E +Q 
Sbjct: 1   MAT-EVESAAT-LPETVESPEVVKAEEKTPEEQPATEAKPEAESANVEKPKPEVQESDQA 60

Query: 61  DSKESEPVEAPVEAAEPVEELKVEEEEKKEEAVPAVEE-------PKAEEPAAPEPEAVE 120
           +    +  EAP E   P EE KVEEEEKKEEAV   E        P+AEEP A EP A E
Sbjct: 61  E----QTAEAPAEPENPTEEPKVEEEEKKEEAVVPTESVAKEEEVPEAEEPKAEEPPAAE 120

Query: 121 PAAEPEAAAAEEEKPVEEEKPAEVAEEKNEE 145
             AE E  AAEEEK VEEEKPAEVAEEK +E
Sbjct: 121 AEAEAE-PAAEEEKQVEEEKPAEVAEEKGQE 144

BLAST of Sed0015420 vs. NCBI nr
Match: KAA0054325.1 (putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa] >TYK12361.1 putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-08
Identity = 76/133 (57.14%), Postives = 85/133 (63.91%), Query Frame = 0

Query: 18  EVPEVVKTEESVPEEQPASEEAPAAEPAVVEEPKPEATEPEQEDSKESEPVEAPVEAAEP 77
           E  EVVK EE  PEEQP  E  P  EP  +EEPKPEA EP+Q D    E  EAPVE+A P
Sbjct: 30  ETVEVVKVEEKSPEEQPVIEADPEVEPTNLEEPKPEAPEPDQTD----ESTEAPVESANP 89

Query: 78  VEELKVEE-EEKKEEAVPAVEEPKAEEPAAPEPEAVE----PAAEPEA-AAAEEEKPVEE 137
           VEE KVEE +EKKEE V   E  + EE  A + E  +    PAAE EA    EEEK VEE
Sbjct: 90  VEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAAEVEAEPPVEEEKVVEE 149

Query: 138 EKPAEVAEEKNEE 145
           EKP EVAEEK++E
Sbjct: 150 EKPVEVAEEKSQE 158

BLAST of Sed0015420 vs. NCBI nr
Match: XP_008458953.1 (PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo])

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-08
Identity = 78/143 (54.55%), Postives = 88/143 (61.54%), Query Frame = 0

Query: 8   TSVTALSETTEVPEVVKTEESVPEEQPASEEAPAAEPAVVEEPKPEATEPEQEDSKESEP 67
           T V   +   E  EVVK EE  PEEQP  E  P  EP  +EEPKPEA EP+Q D    E 
Sbjct: 3   TEVEPAAPLPETVEVVKVEEKSPEEQPVIEADPEVEPTNLEEPKPEAPEPDQTD----ES 62

Query: 68  VEAPVEAAEPVEELKVEE-EEKKEEAVPAVEEPKAEEPAAPEPEAVE----PAAEPEA-A 127
            EAPVE+A PVEE KVEE +EKKEE V   E  + EE  A + E  +    PAAE EA  
Sbjct: 63  TEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAAEVEAEP 122

Query: 128 AAEEEKPVEEEKPAEVAEEKNEE 145
             EEEK VEEEKP EVAEEK++E
Sbjct: 123 PVEEEKVVEEEKPVEVAEEKSQE 141

BLAST of Sed0015420 vs. NCBI nr
Match: XP_004139547.1 (uncharacterized protein LOC101220582 [Cucumis sativus] >KGN65063.1 hypothetical protein Csa_013003 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-05
Identity = 77/145 (53.10%), Postives = 87/145 (60.00%), Query Frame = 0

Query: 8   TSVTALSETTEVPEVVKTEESVPEEQPASEEAPAAEPAVVEEPKPEATEPEQEDSKESEP 67
           T V + +   E  EVVK E+   EEQP  E  P  EPA +EEPKPEA EP+Q        
Sbjct: 3   TEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPEALEPDQ-------- 62

Query: 68  VEAPVEAAEPVEELKVEE-EEKKEEAVPAVEEPKAEE--PAAPEPEAVE--PAAEPEAAA 127
           VE   EA  PVEE KVEE +EKKEE V A E  + EE  P A E   VE  PAAE EA A
Sbjct: 63  VEESTEA--PVEESKVEEGQEKKEETVVATESEEKEEAVPEAEESAKVEESPAAEVEAEA 122

Query: 128 ---AEEEKPVEEEKPAEVAEEKNEE 145
               EEEK +EEEKP EVAEEK++E
Sbjct: 123 KPQVEEEKAIEEEKPTEVAEEKSQE 137

BLAST of Sed0015420 vs. ExPASy TrEMBL
Match: A0A6J1CM25 (uncharacterized protein LOC111012542 OS=Momordica charantia OX=3673 GN=LOC111012542 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.0e-17
Identity = 90/149 (60.40%), Postives = 102/149 (68.46%), Query Frame = 0

Query: 1   MATVEVETSVTALSETTEVPEVVKTEESVPEEQPASEEAPAAEPAVVEEPKPEATEPEQE 60
           MA+VEVE+SV  L E  E PE  K EE  PE QPASEE+P AEPA VEEPKPEATE +Q 
Sbjct: 1   MASVEVESSVANLPENVEAPE-AKVEEKSPEVQPASEESPVAEPADVEEPKPEATEADQ- 60

Query: 61  DSKESEPVEAPVEAAEPVEELKVEEEEKKEEAVPAVE-----EPKAEEPAAPEPEAVEPA 120
                +  +AP EA E  EE +VEEEEKKEEA  A        P AEEP A E +  EPA
Sbjct: 61  ---AVQSAKAPEEAVEAAEEPRVEEEEKKEEAAEAESVDKEAVPAAEEPKAEESQTAEPA 120

Query: 121 AEPEAAAAEEEKPVEEEKPAEVAEEKNEE 145
           AEP AAA E+EKPVE+EK AEVAEEK++E
Sbjct: 121 AEPAAAAVEDEKPVEKEKAAEVAEEKSQE 144

BLAST of Sed0015420 vs. ExPASy TrEMBL
Match: A0A5D3CKL4 (Putative serine/threonine-protein kinase kinX OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001390 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.0e-09
Identity = 76/133 (57.14%), Postives = 85/133 (63.91%), Query Frame = 0

Query: 18  EVPEVVKTEESVPEEQPASEEAPAAEPAVVEEPKPEATEPEQEDSKESEPVEAPVEAAEP 77
           E  EVVK EE  PEEQP  E  P  EP  +EEPKPEA EP+Q D    E  EAPVE+A P
Sbjct: 30  ETVEVVKVEEKSPEEQPVIEADPEVEPTNLEEPKPEAPEPDQTD----ESTEAPVESANP 89

Query: 78  VEELKVEE-EEKKEEAVPAVEEPKAEEPAAPEPEAVE----PAAEPEA-AAAEEEKPVEE 137
           VEE KVEE +EKKEE V   E  + EE  A + E  +    PAAE EA    EEEK VEE
Sbjct: 90  VEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAAEVEAEPPVEEEKVVEE 149

Query: 138 EKPAEVAEEKNEE 145
           EKP EVAEEK++E
Sbjct: 150 EKPVEVAEEKSQE 158

BLAST of Sed0015420 vs. ExPASy TrEMBL
Match: A0A1S3C9M0 (probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC103498212 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 8.6e-09
Identity = 78/143 (54.55%), Postives = 88/143 (61.54%), Query Frame = 0

Query: 8   TSVTALSETTEVPEVVKTEESVPEEQPASEEAPAAEPAVVEEPKPEATEPEQEDSKESEP 67
           T V   +   E  EVVK EE  PEEQP  E  P  EP  +EEPKPEA EP+Q D    E 
Sbjct: 3   TEVEPAAPLPETVEVVKVEEKSPEEQPVIEADPEVEPTNLEEPKPEAPEPDQTD----ES 62

Query: 68  VEAPVEAAEPVEELKVEE-EEKKEEAVPAVEEPKAEEPAAPEPEAVE----PAAEPEA-A 127
            EAPVE+A PVEE KVEE +EKKEE V   E  + EE  A + E  +    PAAE EA  
Sbjct: 63  TEAPVESANPVEESKVEEDQEKKEETVVTTETVEKEEAVAEDEEPAKAEERPAAEVEAEP 122

Query: 128 AAEEEKPVEEEKPAEVAEEKNEE 145
             EEEK VEEEKP EVAEEK++E
Sbjct: 123 PVEEEKVVEEEKPVEVAEEKSQE 141

BLAST of Sed0015420 vs. ExPASy TrEMBL
Match: A0A0A0LTG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.2e-05
Identity = 77/145 (53.10%), Postives = 87/145 (60.00%), Query Frame = 0

Query: 8   TSVTALSETTEVPEVVKTEESVPEEQPASEEAPAAEPAVVEEPKPEATEPEQEDSKESEP 67
           T V + +   E  EVVK E+   EEQP  E  P  EPA +EEPKPEA EP+Q        
Sbjct: 3   TEVESAASLPETVEVVKVEKKSSEEQPVIEADPEVEPANLEEPKPEALEPDQ-------- 62

Query: 68  VEAPVEAAEPVEELKVEE-EEKKEEAVPAVEEPKAEE--PAAPEPEAVE--PAAEPEAAA 127
           VE   EA  PVEE KVEE +EKKEE V A E  + EE  P A E   VE  PAAE EA A
Sbjct: 63  VEESTEA--PVEESKVEEGQEKKEETVVATESEEKEEAVPEAEESAKVEESPAAEVEAEA 122

Query: 128 ---AEEEKPVEEEKPAEVAEEKNEE 145
               EEEK +EEEKP EVAEEK++E
Sbjct: 123 KPQVEEEKAIEEEKPTEVAEEKSQE 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022142401.11.0e-1660.40uncharacterized protein LOC111012542 [Momordica charantia][more]
XP_038895685.18.2e-1459.60cytochrome c1-like [Benincasa hispida][more]
KAA0054325.11.0e-0857.14putative serine/threonine-protein kinase kinX [Cucumis melo var. makuwa] >TYK123... [more]
XP_008458953.11.8e-0854.55PREDICTED: probable serine/threonine-protein kinase kinX [Cucumis melo][more]
XP_004139547.12.4e-0553.10uncharacterized protein LOC101220582 [Cucumis sativus] >KGN65063.1 hypothetical ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CM255.0e-1760.40uncharacterized protein LOC111012542 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A5D3CKL45.0e-0957.14Putative serine/threonine-protein kinase kinX OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S3C9M08.6e-0954.55probable serine/threonine-protein kinase kinX OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A0A0LTG91.2e-0553.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G187170 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015420.1Sed0015420.1mRNA