Sed0015264 (gene) Chayote v1

Overview


Name	Sed0015264
Type	gene
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L6
Location	LG05: 33411204 .. 33415613 (+)
RNA-Seq Expression	Sed0015264
Synteny	Sed0015264

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGTTAGAAAGGTCATTTTGGTAAAATTGAGATTTGTCCGAGGAGTTGATAATCGTTTTGGATAGGGCTTGCGGTCACAGGTCACAGCAGAGAGGATATGAAAACTGAGTAGTTGTTCACTCATCACTGGAGTAGGCTCTATGGCTTCCACGCTTTCCACCCCTTTCCAAACAAGGTACCAACCCTTAATTCTGTTTATTTATAAATGTCTTTAATTGGGTTCAAATGTCTGAGTCTCTATTGCTACATTTCCTATTTTCTAATTATGAATATCATTTGACCAAGTTCTGTTGCTACATTTTGCATTTGGGGTGTGTCTGAAGCTCTTCATAATAGGGTTACATACAAATTTGCTACTACGCCCAAGTGGGGTTTTTCTTTTTTTGCGTTGCAGTTGTTCATCTTAGTCAACATTTCACATGGGAAGTTAATTTGGGGGTTTTTAGTCAGTGTTATTAGAGAGGTGTATATGGTCCGGGTTGAATTCGGTTAAAGGAATTTTTGGACCAACCTGTCAATCCGTCAACCCGCTCAACTCTAGGTATGTGAGCAACCCAACTTAGCCCGTATATTTTTCAGTTGGGTTGGGTTGAGTTATCGAGTTGTAAACATCTATCTTTCTTCGTTAAAGTCAAGTTTATAGCTAATAAATATGTAAAAAGATAATTGGATAATACTAGATTCTGATCCAACTTATTTATCTTATTAATGCATGCTCCTTACCAATATGCAAATAATCTTATCTTATTAATTAATCTTACGTACACATATATATATATGTACATATATATATATATATAATATTATTTATAGTTTAGGTTTATTCAGCCAAAAACTGTCCAACTCTGAGAGCTGATCCAACCTAAAGATCAAATTATAACTCAACCTCACCCAAAGAACTTTATAACCCAATTCAACTTTTATGATTTGGGTTGAATAGTTCAAGTGGTTTGGGTTGTCGGTTTTTCTGTATGCCTCTAACCGTTCTCTTCTTTATGTGCCTGACCTCAAAGATTGATACCCAGAGCTAGTTAAGTTTTTTTACGTAGACTTACCTTTTTGGAGATTATAAGTGGCTGCAGTACGGGCTATTTAGTTGCTTAGAAGTTGATGTACTTTGAGGATATCTTACCGGACCTCAGGAAAGTTGGGATTTTTTAACTCAATAAGAATGGGGGATTCGAATGCACAATCTCTTGGTTATTGAGTCATACATGAATTCATGATGCCACTTACGTTATTGACCAAAAAACTTGGGATTTGGGAGAACCATCTTCAATGTTTGTAGAATTTTTGCTAATTAATCATCTTGCCAGACCACTACCAGCCAAAAGATTTCGATCCTCAGCTGTTTGAATATGGAGCTAATCGATGTACTGCTTTTGAAATTGATTTATTGTGTGTTTGAACTGTTGTACCAATTTCTAGTTCTAATTGCAACACCAAACCAAATTCCAGATCTAAAACATAGACCAAACTAATAGATGAAAGTCATACCAAAGTAAAGAAGGATAAGAGAAGAGATAGCACACCAGATGTAAAGTGGTTCGGACTAGCTTACTTTATTGTTCAGAATGTGAGATGATCAATTTTGATCATGCTCACTCATAATTTTCATTGATGAATCAAGAGCTCTCAATTTAGGGACTAGGGTTTCTCACTCTCAATTGTAGAAGAAAGCCCAAGGAGCTTTATATGCTAGCTCAATCACACACCCTACACATGGTTAATTAACCTAATCCCAATTAACCCATGTTAAAATAACTCACTAAATGGGTTGTTATGATGATGTGTAATTAAATTACACGAACCTTTAGCCATCACTAACGATGGACATCTACATATCATCCACTCTTTTCTAATCTAGACTAAGCTCCTTGCAGTTGGAGAGTTATTAGGAAAATAGAATCATGGTCATTTCTTGAATATGAGGTGAGTTTATTGGAATTGTTTTTCAACTCTTTTTAACCCAATGGAGTTTGTAAAGATGCATTTCTATATATGTGTGAATATTCAGGTCACTTTATGTGCATCTCGACTATTCGCACGGACATACTGTCCAACCCTATAACATTTGAATGTCAAGAAAACATGTAAGAAATTATTTTCTAGGTTGGTGGAAACCATAAAATAAATTCATCACCTCTTAGTTACGTATGACATTCTTGACCATTAGGCCACTCTATGATTGTAAGCTTAAAGAATATGTCAAGCTTGCTCTTGGATAATATTTAAGAATAGATTGAACTCCTTGCAAGTGGAGACTCTTATTACTAGGGAAAAAACAATAAACCATTCCATAATCTGATAAATACCATGGTGAATTTGAATTTGAATTTGTTCCAAGGACAAAGTAATCTAATATTTATCCTGTTGAGCAAATAATGAGTTAACGACTTGTGTTATCTGTCTGATATGAGTCTTTATCCATATTTCTCTTGTCTATTCTCTTTTGTTTCAACTTTTTTGTGTTGAGGGAATGTTTAGAAAGACAAAAACTTGAGCAGCCTAGAGTTTGTTTAAAGTCGTCTTTTGTTTAATCTTCAATTACTTTCTGTAAACGCAAACATTGTAAAATTTTGAAACCATTTTCTCATTGGTGGCTCAGCAATTTTCGATCTACATTTTTGGGAGATAAAAATGGATTCTCTGCTTCTACAATGCATGTATGTTATATTGGTCACTCGAACAGGACTATTGAATGCAAGGAATCACGAATAGGGAAGCAGCCAATTCAACTGCCATCCAATGTAGCCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTTTCGCTACTTTATCCAAGAGAAATAAAAATTGAGAGGGAAGATTCTGGGATCTTAAGAGTTAAGAAGGCACTGGAGACAAGAAGAGCCAACCAAATGCATGGGCTTTTCAGGTAATCTACTCATGAAGTTAATTTACTAATCGCAATATTTTCACTGTAACCGTCCGGAAGGGGCAGCCTTGTTGGTAGAGGCTTGGGGTCTCTAAGGTGTGGTCTCTTGAAGGTTCTAAGTTTGAAACTTACAAATGAAGTAAAACTTCTTGTTGTCTTGTCTCCTAGATCCAAACCTTGGGACAGTCGACAGCACGAGGGTAGTGGGCAAAACCTTGATTCCCAGTTATAAAATATATATATATATATTCGAAGTAATCAATCATTTTTATTTTAGTTGACTCTTCTGAAACATTTAGATTTTGTTTTTCCTCCTCTTAAGTTTTAGTTTACATGGTCACTTGTGTTTATGCATCTTTTCCAAATTTTGGCTTGCCTCCTATGTTGATGCCGTAACTTTTTTTTGTATCTGTGAGTGCCTAGGCCGGTTTATGCGCCACACCTCGACTATTTTCATGGAGCATACTCCTTGACCCTATAATATTTGGATGTCTAGGAAACTCAAAAGAAATTATTTCTTAGGTAGGTAGCCGGCTACCTTTGCTATAAGTTTGAAAAGACTGCCTGCTTCTTTAGTCAAGTTAGTCGGTTGTTGCCACTTGCCAACAGGAGCAGTAGCTCAACGAAGTCAGATTACACTCAAGGATTCAAATTCCCCACCTCCAATTATGGTAGAACTCAAAAAAAAAAAAAAAGTTGTCAATTATTTCATCAATGATCTAAAATTGCTTTTATGGATGAAAATACTAATTATTTGTGGACTGCTAGAAAGAAACCAATTAAGATCTCTTCAAATTCTTAAAATAAGATCACTTATATTATGAATGTAAACAACCAGCCATCAGATGACATTGATGCCAACGAAAGCATAACTCAACTAGCACAAAGTATAGACAGAATGATTTAGAGGTCATGTTTTTTATTTCCTCAGGACCCTCACAGACAATATGGTGGTAGGAGTATCCAAGGGGTTCGAAAAGAAACTCCAACTGGTCGGTGTTGGTTATCGAGCGATGTTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCAGTTAGAATGGCCATTCCTGAGGGTCTTCAAGTGAAGGTAGAAGAAAACACCAGAATTACAGTAAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCTTCTATCAGACAATGGAGACCCCCAGAACCATACAAGGGTAAAGGAGTCAAATATGCTGATGAAATTGTTAGAAGAAAGGAGGGCAAAGCAGGGAAGAAGAAGTGATGGTTAGCAATTCATTCATTATTTGGTTTTATCTTTTGGAAATATTTTGTCTTTCTAGTATCATAATGAATCTCCAACAGGTGATTTTGAGACTTTGCCTTTAATTCCAGTTTAAACTTGTTTTCTATTCATATTTTTATATTCTTAATATCTGTAAATGTCCGAGTCAGTTTACACATATCTTGACTATTTTCATTGGACATATCGTCTGACCCTACAACATT

mRNA sequence

GAGGTTAGAAAGGTCATTTTGGTAAAATTGAGATTTGTCCGAGGAGTTGATAATCGTTTTGGATAGGGCTTGCGGTCACAGGTCACAGCAGAGAGGATATGAAAACTGAGTAGTTGTTCACTCATCACTGGAGTAGGCTCTATGGCTTCCACGCTTTCCACCCCTTTCCAAACAAGCAATTTTCGATCTACATTTTTGGGAGATAAAAATGGATTCTCTGCTTCTACAATGCATGTATGTTATATTGGTCACTCGAACAGGACTATTGAATGCAAGGAATCACGAATAGGGAAGCAGCCAATTCAACTGCCATCCAATGTAGCCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTTTCGCTACTTTATCCAAGAGAAATAAAAATTGAGAGGGAAGATTCTGGGATCTTAAGAGTTAAGAAGGCACTGGAGACAAGAAGAGCCAACCAAATGCATGGGCTTTTCAGGACCCTCACAGACAATATGGTGGTAGGAGTATCCAAGGGGTTCGAAAAGAAACTCCAACTGGTCGGTGTTGGTTATCGAGCGATGTTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCAGTTAGAATGGCCATTCCTGAGGGTCTTCAAGTGAAGGTAGAAGAAAACACCAGAATTACAGTAAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCTTCTATCAGACAATGGAGACCCCCAGAACCATACAAGGGTAAAGGAGTCAAATATGCTGATGAAATTGTTAGAAGAAAGGAGGGCAAAGCAGGGAAGAAGAAGTGATGGTTAGCAATTCATTCATTATTTGGTTTTATCTTTTGGAAATATTTTGTCTTTCTAGTATCATAATGAATCTCCAACAGGTGATTTTGAGACTTTGCCTTTAATTCCAGTTTAAACTTGTTTTCTATTCATATTTTTATATTCTTAATATCTGTAAATGTCCGAGTCAGTTTACACATATCTTGACTATTTTCATTGGACATATCGTCTGACCCTACAACATT

Coding sequence (CDS)

ATGGCTTCCACGCTTTCCACCCCTTTCCAAACAAGCAATTTTCGATCTACATTTTTGGGAGATAAAAATGGATTCTCTGCTTCTACAATGCATGTATGTTATATTGGTCACTCGAACAGGACTATTGAATGCAAGGAATCACGAATAGGGAAGCAGCCAATTCAACTGCCATCCAATGTAGCCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTGGGAGAGCTTTCGCTACTTTATCCAAGAGAAATAAAAATTGAGAGGGAAGATTCTGGGATCTTAAGAGTTAAGAAGGCACTGGAGACAAGAAGAGCCAACCAAATGCATGGGCTTTTCAGGACCCTCACAGACAATATGGTGGTAGGAGTATCCAAGGGGTTCGAAAAGAAACTCCAACTGGTCGGTGTTGGTTATCGAGCGATGTTAGAAGGAAAAGACTTGGTATTAAATCTTGGGTTCTCTCATCCAGTTAGAATGGCCATTCCTGAGGGTCTTCAAGTGAAGGTAGAAGAAAACACCAGAATTACAGTAAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCTTCTATCAGACAATGGAGACCCCCAGAACCATACAAGGGTAAAGGAGTCAAATATGCTGATGAAATTGTTAGAAGAAAGGAGGGCAAAGCAGGGAAGAAGAAGTGA

Protein sequence

MASTLSTPFQTSNFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNVAITLQGQDLKVKGPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK

Homology

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BLAST of Sed0015264 vs. NCBI nr
Match: XP_022930652.1 (50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita moschata] >KAG7022869.1 50S ribosomal protein L6, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 418.3 bits (1074), Expect = 4.2e-113
Identity = 210/226 (92.92%), Postives = 218/226 (96.46%), Query Frame = 0


Query: 1   MASTLSTPFQTSNFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNV 60
           MASTLS PFQTSNFRSTFLG+KNGFSASTM V +I    +TIECKESRIGKQPIQ+PSNV
Sbjct: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  AITLQGQDLKVKGPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDN 120
            ITLQGQDLKVKGPLGELSLLYPRE+KIER+DSGILRVKKALETRRANQMHGLFRTLTDN
Sbjct: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVS 180
           MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVS
Sbjct: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

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BLAST of Sed0015264 vs. NCBI nr
Match: XP_023530191.1 (50S ribosomal protein L6, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 416.8 bits (1070), Expect = 1.2e-112
Identity = 209/226 (92.48%), Postives = 218/226 (96.46%), Query Frame = 0


Query: 1   MASTLSTPFQTSNFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNV 60
           MASTLS PFQTSNFRSTFLG+KNGFSAST+ V +I    RTIECKESRIGKQPIQ+PSNV
Sbjct: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTVPVSHIVRLRRTIECKESRIGKQPIQVPSNV 60

Query: 61  AITLQGQDLKVKGPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDN 120
            ITLQGQDLKVKGPLGELSLLYPRE+KIER+D+GILRVKKALETRRANQMHGLFRTLTDN
Sbjct: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDAGILRVKKALETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVS 180
           MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVS
Sbjct: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Sed0015264 vs. NCBI nr
Match: XP_022136314.1 (50S ribosomal protein L6, chloroplastic [Momordica charantia])

HSP 1 Score: 415.2 bits (1066), Expect = 3.5e-112
Identity = 206/226 (91.15%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MASTLSTPFQTSNFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNV 60
           MASTL+ PFQTSNFRSTFLG+KNGFS STM VC+IG   +TIECKESRIGKQPIQ+PSNV
Sbjct: 1   MASTLTIPFQTSNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  AITLQGQDLKVKGPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDN 120
            I LQGQDLKVKGPLGELS+LYPRE+KIEREDSGILRVKKA+ETRRA QMHGLFRTLTDN
Sbjct: 61  IIALQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVS 180
           MVVGVS+GFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVS
Sbjct: 121 MVVGVSRGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Sed0015264 vs. NCBI nr
Match: XP_022988916.1 (50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita maxima])

HSP 1 Score: 414.1 bits (1063), Expect = 7.9e-112
Identity = 207/226 (91.59%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MASTLSTPFQTSNFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNV 60
           MASTLS PFQTSNFRSTFLG+KNGFSASTM V +I    +TIECKESRIGKQPIQ+PSNV
Sbjct: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  AITLQGQDLKVKGPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDN 120
            ITLQGQDLKVKGPLGELSLLYPRE+KIER+DSGILRVKKALETRRANQMHGLFRTLTDN
Sbjct: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVS 180
           MV+GVSKGFEKKLQLVGVGYRA+LEGKDLVLNLGFSHPVRMAIP+GLQV VEENTRITVS
Sbjct: 121 MVIGVSKGFEKKLQLVGVGYRAILEGKDLVLNLGFSHPVRMAIPDGLQVMVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Sed0015264 vs. NCBI nr
Match: XP_022930651.1 (50S ribosomal protein L6, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 399.1 bits (1024), Expect = 2.6e-107
Identity = 199/214 (92.99%), Postives = 207/214 (96.73%), Query Frame = 0


Query: 13  NFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNVAITLQGQDLKVK 72
           NFRSTFLG+KNGFSASTM V +I    +TIECKESRIGKQPIQ+PSNV ITLQGQDLKVK
Sbjct: 32  NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK 91

Query: 73  GPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK 132
           GPLGELSLLYPRE+KIER+DSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK
Sbjct: 92  GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK 151

Query: 133 LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAA 192
           LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVSGYDKCAIGQFAA
Sbjct: 152 LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAA 211

Query: 193 SIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           SIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 212 SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 245

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BLAST of Sed0015264 vs. ExPASy Swiss-Prot
Match: O23049 (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 3.5e-94
Identity = 171/226 (75.66%), Postives = 198/226 (87.61%), Query Frame = 0


Query: 1   MASTLSTPFQTSNFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNV 60
           MAS+L + FQ    RS FLGD+N F  S+     +G+S++TIECKESRIGKQPI +PSNV
Sbjct: 1   MASSLVSSFQP---RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNV 60

Query: 61  AITLQGQDLKVKGPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDN 120
            I L+GQDLKVKGPLGEL+L YPRE+++ +E+SG LRVKK +ETRRANQMHGLFRTLTDN
Sbjct: 61  TIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVS 180
           MVVGVSKGFEKKL LVGVGYRA ++GK+LVLNLGFSHPV+M IP+ L+VKVEENTRITVS
Sbjct: 121 MVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           GYDK  IGQFAA++R+WRPPEPYKGKGVKY+DEIVRRKEGKAGKKK
Sbjct: 181 GYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]

BLAST of Sed0015264 vs. ExPASy Swiss-Prot
Match: P82193 (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 327.4 bits (838), Expect = 1.3e-88
Identity = 160/215 (74.42%), Postives = 189/215 (87.91%), Query Frame = 0


Query: 12  SNFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNVAITLQGQDLKV 71
           S+ +S FLG K   S S + V  IG   ++++CKESRIGKQPI +P+NVAI ++GQDLKV
Sbjct: 7   SHMKSVFLGMKVEISTS-VPVTRIGFWRKSVDCKESRIGKQPITVPANVAIAMEGQDLKV 66

Query: 72  KGPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 131
           KGPLGELS+ YPRE+ +E+++SG LRV+KA+ETRRANQMHGLFRTLTDNMVVGVSKGFEK
Sbjct: 67  KGPLGELSITYPREVLVEKQESGFLRVRKAVETRRANQMHGLFRTLTDNMVVGVSKGFEK 126

Query: 132 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFA 191
           KLQLVGVGYRA +EGKDL+L+LGFSHPVRMAIP+ LQVKVEENT++TVSG DK  +GQFA
Sbjct: 127 KLQLVGVGYRATVEGKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSVVGQFA 186

Query: 192 ASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           A+IR WRPPEPYKGKGV+Y DE+VRRKEGKAGKKK
Sbjct: 187 ATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGKKK 220

[Close]

BLAST of Sed0015264 vs. ExPASy Swiss-Prot
Match: B0C1E7 (50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplF PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.8e-51
Identity = 105/179 (58.66%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 47  SRIGKQPIQLPSNVAITLQGQDLKVKGPLGELSLLYPREIKIEREDSGILRVKKALETRR 106
           SRIGK PI +P  V +T++GQ + VKGP GELS     E+ IE+ D+ ++ V +  E+R 
Sbjct: 2   SRIGKVPIPIPDKVNVTIKGQAVTVKGPKGELSREITPEVAIEQADN-LVTVTRRNESRI 61

Query: 107 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEG 166
           A Q HGL RTL  NMV GVSKGFEKKLQ+ GVGYRA ++G++L+LN+G+S+PV +  PEG
Sbjct: 62  ARQRHGLSRTLIANMVEGVSKGFEKKLQIQGVGYRAQVQGRNLILNVGYSNPVTIEPPEG 121

Query: 167 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 226
           +QV VE NT + VSG +K  +G  AA IR  RPPEPYKGKG++YADE VRRK GKAGKK
Sbjct: 122 VQVAVESNTNVIVSGINKEVVGNTAARIRAVRPPEPYKGKGIRYADEYVRRKVGKAGKK 179

[Close]

BLAST of Sed0015264 vs. ExPASy Swiss-Prot
Match: B1WQS5 (50S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=rplF PE=3 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.3e-50
Identity = 98/179 (54.75%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 47  SRIGKQPIQLPSNVAITLQGQDLKVKGPLGELSLLYPREIKIEREDSGILRVKKALETRR 106
           SRIGK+PI LP+ V I ++GQ + VKGP G L L  P E+ + +E   +  V++  ++R 
Sbjct: 2   SRIGKKPIPLPNKVTIDIKGQHIAVKGPKGSLELDLPSEVTVNQEGETV-EVQRVDDSRT 61

Query: 107 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEG 166
           A + HGLFRTL  NM+ GVS+GFEK+L + GVGYRA  +G  L LN+G+S PV M +P+G
Sbjct: 62  ARERHGLFRTLVANMIQGVSQGFEKRLNIQGVGYRAQAQGSKLTLNVGYSKPVEMTMPQG 121

Query: 167 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 226
           + V VE NT++ VSG DK  +G  AA IR  RPPEPYKGKG++Y DE VRRK GKAGKK
Sbjct: 122 INVAVENNTQVVVSGIDKEIVGNIAAKIRGVRPPEPYKGKGIRYQDEYVRRKAGKAGKK 179

[Close]

BLAST of Sed0015264 vs. ExPASy Swiss-Prot
Match: B7KI01 (50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rplF PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 6.8e-50
Identity = 98/179 (54.75%), Postives = 126/179 (70.39%), Query Frame = 0


Query: 47  SRIGKQPIQLPSNVAITLQGQDLKVKGPLGELSLLYPREIKIEREDSGILRVKKALETRR 106
           SRIGK+PI +P+ V + + G  + VKGP GEL    P  + +E +D G+LRV +  ++R 
Sbjct: 2   SRIGKRPITIPNKVTVNIDGSHVAVKGPKGELQRTLPTLVIVE-QDEGVLRVVRQDDSRT 61

Query: 107 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEG 166
           A Q HGL RTL  NMV GVSKGFEK+L++ GVGYRA  +G  L LN+G+S PV M +P G
Sbjct: 62  ARQRHGLCRTLVSNMVEGVSKGFEKRLEIQGVGYRAAAQGSKLTLNVGYSKPVEMDMPSG 121

Query: 167 LQVKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 226
           + V VE+NT IT++G DK  +G  AA IR  RPPEPYKGKG++Y  E+VRRK GK GKK
Sbjct: 122 IGVAVEKNTEITITGIDKEIVGNVAAKIRAVRPPEPYKGKGIRYKGEVVRRKAGKTGKK 179

[Close]

BLAST of Sed0015264 vs. ExPASy TrEMBL
Match: A0A6J1ER61 (50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437054 PE=3 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 2.0e-113
Identity = 210/226 (92.92%), Postives = 218/226 (96.46%), Query Frame = 0


Query: 1   MASTLSTPFQTSNFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNV 60
           MASTLS PFQTSNFRSTFLG+KNGFSASTM V +I    +TIECKESRIGKQPIQ+PSNV
Sbjct: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  AITLQGQDLKVKGPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDN 120
            ITLQGQDLKVKGPLGELSLLYPRE+KIER+DSGILRVKKALETRRANQMHGLFRTLTDN
Sbjct: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVS 180
           MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVS
Sbjct: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Sed0015264 vs. ExPASy TrEMBL
Match: A0A6J1C3Z5 (50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008030 PE=3 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.7e-112
Identity = 206/226 (91.15%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MASTLSTPFQTSNFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNV 60
           MASTL+ PFQTSNFRSTFLG+KNGFS STM VC+IG   +TIECKESRIGKQPIQ+PSNV
Sbjct: 1   MASTLTIPFQTSNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  AITLQGQDLKVKGPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDN 120
            I LQGQDLKVKGPLGELS+LYPRE+KIEREDSGILRVKKA+ETRRA QMHGLFRTLTDN
Sbjct: 61  IIALQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVS 180
           MVVGVS+GFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVS
Sbjct: 121 MVVGVSRGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Sed0015264 vs. ExPASy TrEMBL
Match: A0A6J1JIK5 (50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111486127 PE=3 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 3.8e-112
Identity = 207/226 (91.59%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MASTLSTPFQTSNFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNV 60
           MASTLS PFQTSNFRSTFLG+KNGFSASTM V +I    +TIECKESRIGKQPIQ+PSNV
Sbjct: 1   MASTLSIPFQTSNFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNV 60

Query: 61  AITLQGQDLKVKGPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDN 120
            ITLQGQDLKVKGPLGELSLLYPRE+KIER+DSGILRVKKALETRRANQMHGLFRTLTDN
Sbjct: 61  TITLQGQDLKVKGPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVS 180
           MV+GVSKGFEKKLQLVGVGYRA+LEGKDLVLNLGFSHPVRMAIP+GLQV VEENTRITVS
Sbjct: 121 MVIGVSKGFEKKLQLVGVGYRAILEGKDLVLNLGFSHPVRMAIPDGLQVMVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

[Close]

BLAST of Sed0015264 vs. ExPASy TrEMBL
Match: A0A6J1ERI9 (50S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437054 PE=3 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 1.3e-107
Identity = 199/214 (92.99%), Postives = 207/214 (96.73%), Query Frame = 0


Query: 13  NFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNVAITLQGQDLKVK 72
           NFRSTFLG+KNGFSASTM V +I    +TIECKESRIGKQPIQ+PSNV ITLQGQDLKVK
Sbjct: 32  NFRSTFLGEKNGFSASTMPVSHIVRLRKTIECKESRIGKQPIQVPSNVTITLQGQDLKVK 91

Query: 73  GPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK 132
           GPLGELSLLYPRE+KIER+DSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK
Sbjct: 92  GPLGELSLLYPREVKIERDDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKK 151

Query: 133 LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFAA 192
           LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIP+GLQVKVEENTRITVSGYDKCAIGQFAA
Sbjct: 152 LQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFAA 211

Query: 193 SIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           SIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 212 SIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 245

[Close]

BLAST of Sed0015264 vs. ExPASy TrEMBL
Match: A0A6J1GLT4 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455470 PE=3 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 2.8e-107
Identity = 199/215 (92.56%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 12  SNFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNVAITLQGQDLKV 71
           +NFRSTFLG+KNGF+ STM V + G   +TIECKESRIGKQPIQ+PSNV ITLQGQDLKV
Sbjct: 17  NNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQPIQVPSNVNITLQGQDLKV 76

Query: 72  KGPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 131
           KGPLGELS+LYPRE+KIEREDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK
Sbjct: 77  KGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 136

Query: 132 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFA 191
           KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFA
Sbjct: 137 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCAIGQFA 196

Query: 192 ASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           ASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 197 ASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of Sed0015264 vs. TAIR 10
Match: AT1G05190.1 (Ribosomal protein L6 family )

HSP 1 Score: 345.9 bits (886), Expect = 2.5e-95
Identity = 171/226 (75.66%), Postives = 198/226 (87.61%), Query Frame = 0


Query: 1   MASTLSTPFQTSNFRSTFLGDKNGFSASTMHVCYIGHSNRTIECKESRIGKQPIQLPSNV 60
           MAS+L + FQ    RS FLGD+N F  S+     +G+S++TIECKESRIGKQPI +PSNV
Sbjct: 1   MASSLVSSFQP---RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQPIAVPSNV 60

Query: 61  AITLQGQDLKVKGPLGELSLLYPREIKIEREDSGILRVKKALETRRANQMHGLFRTLTDN 120
            I L+GQDLKVKGPLGEL+L YPRE+++ +E+SG LRVKK +ETRRANQMHGLFRTLTDN
Sbjct: 61  TIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDN 120

Query: 121 MVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVS 180
           MVVGVSKGFEKKL LVGVGYRA ++GK+LVLNLGFSHPV+M IP+ L+VKVEENTRITVS
Sbjct: 121 MVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVS 180

Query: 181 GYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           GYDK  IGQFAA++R+WRPPEPYKGKGVKY+DEIVRRKEGKAGKKK
Sbjct: 181 GYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]

BLAST of Sed0015264 vs. TAIR 10
Match: AT2G18400.1 (ribosomal protein L6 family protein )

HSP 1 Score: 97.1 bits (240), Expect = 2.0e-20
Identity = 46/98 (46.94%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 129 FEKKLQLVGVGYRAMLE--GKDLVLNLGFSHPVRMAIPEGLQVKVEENTRITVSGYDKCA 188
           F + L++VGVGY+A  E  G+ L L LG+SH V +A+P  ++V   +N  +  +G DK  
Sbjct: 5   FFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGIDKQR 64

Query: 189 IGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGK 225
           + QFAA++R  +PPEPYKGKG+ Y DE+V++K+GK  K
Sbjct: 65  VHQFAATVRSCKPPEPYKGKGIMYTDEVVKKKQGKKSK 102

The following BLAST results are available for this feature:

BLAST of Sed0015264 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930652.1	4.2e-113	92.92	50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita moschata] >KAG7022...	[more]
XP_023530191.1	1.2e-112	92.48	50S ribosomal protein L6, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022136314.1	3.5e-112	91.15	50S ribosomal protein L6, chloroplastic [Momordica charantia]	[more]
XP_022988916.1	7.9e-112	91.59	50S ribosomal protein L6, chloroplastic isoform X2 [Cucurbita maxima]	[more]
XP_022930651.1	2.6e-107	92.99	50S ribosomal protein L6, chloroplastic isoform X1 [Cucurbita moschata]	[more]

BLAST of Sed0015264 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23049	3.5e-94	75.66	50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 ...	[more]
P82193	1.3e-88	74.42	50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=...	[more]
B0C1E7	2.8e-51	58.66	50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G...	[more]
B1WQS5	2.3e-50	54.75	50S ribosomal protein L6 OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) O...	[more]
B7KI01	6.8e-50	54.75	50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN...	[more]

BLAST of Sed0015264 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ER61	2.0e-113	92.92	50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1C3Z5	1.7e-112	91.15	50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1JIK5	3.8e-112	91.59	50S ribosomal protein L6, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1ERI9	1.3e-107	92.99	50S ribosomal protein L6, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662...	[more]
A0A6J1GLT4	2.8e-107	92.56	50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Sed0015264 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05190.1	2.5e-95	75.66	Ribosomal protein L6 family	[more]
AT2G18400.1	2.0e-20	46.94	ribosomal protein L6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019906	Ribosomal protein L6, bacterial-type	PRINTS	PR00059	RIBOSOMALL6	coord: 159..180 score: 66.42 coord: 89..114 score: 61.66 coord: 117..133 score: 49.15
IPR019906	Ribosomal protein L6, bacterial-type	TIGRFAM	TIGR03654	TIGR03654	coord: 19..194 e-value: 4.3E-71 score: 236.2
IPR019906	Ribosomal protein L6, bacterial-type	HAMAP	MF_01365_B	Ribosomal_L6_B	coord: 18..194 score: 36.94696
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 29..100 e-value: 2.2E-13 score: 50.6 coord: 108..182 e-value: 2.5E-19 score: 69.7
IPR000702	Ribosomal protein L6	PIRSF	PIRSF002162	RPL6p_RPL6a_RPL9e_RPL9o	coord: 17..195 e-value: 5.2E-48 score: 160.9
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 9..198
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 101..198 e-value: 3.4E-41 score: 141.3
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 17..100 e-value: 5.9E-25 score: 89.6
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 19..100
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 101..194
None	No IPR available	PANTHER	PTHR11655:SF38	BNAA10G03220D PROTEIN	coord: 9..198
IPR002358	Ribosomal protein L6, conserved site	PROSITE	PS00525	RIBOSOMAL_L6_1	coord: 172..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015264.1	Sed0015264.1	mRNA
Sed0015264.2	Sed0015264.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome