Sed0015238 (gene) Chayote v1

Overview


Name	Sed0015238
Type	gene
Organism	Sechium edule (Chayote v1)
Description	PAP/OAS1 substrate-binding domain superfamily
Location	LG14: 5776811 .. 5778536 (+)
RNA-Seq Expression	Sed0015238
Synteny	Sed0015238

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCGGGGCATGAGAAAAACTCGAGGACGTTTCTCATAAAGCATCTTAACATCGTTGATCCACTGCAAGAAAATAACAACCTTTGTCTCAGTGTAAGCAAAGGTAGCTACAATTCTCTTACATTAGGTTTGATTGTCTGACACTTTTTTCCATCTATAACATCTAAATCCTATTTTTATGCTTACTCTATCTCGATCTTTAAAATCTAAAATGGTTCCTAAACTATGTGACTTAAGTGTAGTTTTTTGGTCAAAAAAAGGGTCTCGAGGTGCTTAAGGTGATGAGTTCAATTCATGGTGTGGCCACCTACCTAGGAATTAATTTCCTACGAGTTTCTTTGACGTCCAAATGTTATAAAGTCCGGCGGTATGTTCCGTGACATTAGTCGAGATGCATGCAAACTGGCCTGTACAGTTACAGATATTAAAAAAAAATATAGTTCTTTGATTGAGGGGATCCTTCTACATCCAAATCTATTGTGATAGAGAAGAGGCGTTTCTTGTGGCTTGGGGGAGTTACTTCTTTTGATTGGAGCTTTTATTTTGTATGTCCAAAGTTTGATTATTCATTATTAAGGGTCCAATTTTTTAAACGAATCTAGTCTTTTTTTTTCATTTTTTTTTTCATTATAATGAACGGAAAGGTAAGGACTAAACTAAACTTTTATATAAAGTTTAGAGATTAAATTTGAATATTTTAAAACTAGGGAATCAAAACAGATATTTGTGTGTTTACCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATTATTTGCGTTGAATCATGTTAAATCACCAATTAACCAAAAAGCTTAAGCCCATTTCATAACATTTTGTTTCTAGTTTTAGGTTTTGAAATTTAAGCCTACAACGGCTATTTTATCATAGGTTTTTTCTTACTTGCATATCTACATATTTTATCTCTATTTTAAGAAATCAAACAAAAACTTGAAAACAAAGAAAGTAGTTCCAAAAACTTATTTTTGTTTTTGAAATTTGATTAGCATTCACATATAGATGGATATATGATAGGAAAGATCAACAACACTTTTTCTCACTTCTGGCGCCCTTGGAAATTTGAGAAATGTCCTACAAATGAAATTCAATTTTAATTGAAAATTCTTTGATATCACGTTGAATCATGCTAAATCACCGATCAACCATTAGCTTTTTTTTATTAGATGATACCCCTTTCAAATATTTGACAACCAATCTGTAATGTGCAGGAAACTTTTCTACAGGCTTAAAAGTGCTTTCAGATATGGTGCTGCTAATAAGCTAGGGGTTCATCCTTTCCCATCCTGAAAAAAATGTAGTGGATGAAGTTTGCAAGTTATTTTCTAATACATTGGACCGGCACGGACGTGGGCAGCGACCTGATGTCGAGGATCCCGATCCAGTTTCCGAAGGCTATGAATCTTCTACATCTTCTCTAGTATCTTGTATGGTTCAGGCCCTGTGTGTTCTAGTGACTCTGATGAAGAATGTAGATGGAGTCAAGAGGTATCAATTCATGGTGGAAATGCCAATGATACGGTATCGGGTACGTCTGACCAGGTCGGCGTAAAAACCATCTCGAGGAAGATCTTTCCAAGTGAAACCAAATCAGTTCCCCAGATGCCATTTGTGTTGCAGATTATCATCTTGCTGGAGATGCAAATGATCTTGCTAGCCTGA

mRNA sequence

ATGTTCTCGGGGCATGAGAAAAACTCGAGGACGTTTCTCATAAAGCATCTTAACATCGTTGATCCACTGCAAGAAAATAACAACCTTTGTCTCAGTGTAAGCAAAGGCCCTGTGTGTTCTAGTGACTCTGATGAAGAATGTAGATGGAGTCAAGAGGTATCAATTCATGGTGGAAATGCCAATGATACGGTATCGGGTACGTCTGACCAGGTCGGCGTAAAAACCATCTCGAGGAAGATCTTTCCAAGTGAAACCAAATCAGTTCCCCAGATGCCATTTGTGTTGCAGATTATCATCTTGCTGGAGATGCAAATGATCTTGCTAGCCTGA

Coding sequence (CDS)

ATGTTCTCGGGGCATGAGAAAAACTCGAGGACGTTTCTCATAAAGCATCTTAACATCGTTGATCCACTGCAAGAAAATAACAACCTTTGTCTCAGTGTAAGCAAAGGCCCTGTGTGTTCTAGTGACTCTGATGAAGAATGTAGATGGAGTCAAGAGGTATCAATTCATGGTGGAAATGCCAATGATACGGTATCGGGTACGTCTGACCAGGTCGGCGTAAAAACCATCTCGAGGAAGATCTTTCCAAGTGAAACCAAATCAGTTCCCCAGATGCCATTTGTGTTGCAGATTATCATCTTGCTGGAGATGCAAATGATCTTGCTAGCCTGA

Protein sequence

MFSGHEKNSRTFLIKHLNIVDPLQENNNLCLSVSKGPVCSSDSDEECRWSQEVSIHGGNANDTVSGTSDQVGVKTISRKIFPSETKSVPQMPFVLQIIILLEMQMILLA

Homology

[Close]

BLAST of Sed0015238 vs. NCBI nr
Match: XP_004142733.1 (uncharacterized protein LOC101207419 [Cucumis sativus] >KGN54445.1 hypothetical protein Csa_012529 [Cucumis sativus])

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-06
Identity = 49/152 (32.24%), Postives = 54/152 (35.53%), Query Frame = 0


Query: 4   GHEKNSRTFLIKHLNIVDPLQENNNLCLSVSK---------------------------- 63
           G+E NSR F IKHLNIVDPL+ENNNL  SVSK                            
Sbjct: 305 GYEANSRAFPIKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFSYGARKLGFILSHPEDNV 364

Query: 64  -------------------------------------------------------GPVCS 73
                                                                  G VC+
Sbjct: 365 VDEVRKFFSNTLDRHGGGQRPDVQDPAPVSGGYESCAALLVSGTETQEETNNRDSGSVCA 424

[Close]

BLAST of Sed0015238 vs. NCBI nr
Match: XP_038881653.1 (uncharacterized protein LOC120073103 [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 48/152 (31.58%), Postives = 55/152 (36.18%), Query Frame = 0


Query: 4   GHEKNSRTFLIKHLNIVDPLQENNNLCLSVSKG--------------------------- 63
           G+E NSR F IKHLNIVDPL+ENNNL  SVSKG                           
Sbjct: 303 GYEANSRAFPIKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFSYGARKLGFILSHPEDNV 362

Query: 64  ---------------------------PV-----------------------------CS 73
                                      PV                             C+
Sbjct: 363 VDEVRKFFSNTLDRHGGGQRPDVQDPVPVPGGYESCAALLVSGTETQEETNNRDSGSACA 422

[Close]

BLAST of Sed0015238 vs. NCBI nr
Match: KAA0025382.1 (putative NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 6.9e-05
Identity = 48/152 (31.58%), Postives = 53/152 (34.87%), Query Frame = 0


Query: 4   GHEKNSRTFLIKHLNIVDPLQENNNLCLSVSK---------------------------- 63
           G+E NSR F IKHLNIVDPL+ENNNL  SVSK                            
Sbjct: 305 GYEANSRAFPIKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFSYGARKLGFILSHPEDNV 364

Query: 64  -------------------------------------------------------GPVCS 73
                                                                  G VC+
Sbjct: 365 VDEVRKFFSNTLDRHGGGQRPDVQDPAPVSGGYESCAALLVSGTETQEETNNRDSGSVCA 424

[Close]

BLAST of Sed0015238 vs. NCBI nr
Match: XP_008463256.1 (PREDICTED: uncharacterized protein LOC103501459 [Cucumis melo])

HSP 1 Score: 57.8 bits (138), Expect = 6.9e-05
Identity = 48/152 (31.58%), Postives = 53/152 (34.87%), Query Frame = 0


Query: 4   GHEKNSRTFLIKHLNIVDPLQENNNLCLSVSK---------------------------- 63
           G+E NSR F IKHLNIVDPL+ENNNL  SVSK                            
Sbjct: 305 GYEANSRAFPIKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFSYGARKLGFILSHPEDNV 364

Query: 64  -------------------------------------------------------GPVCS 73
                                                                  G VC+
Sbjct: 365 VDEVRKFFSNTLDRHGGGQRPDVQDPAPVSGGYESCAALLVSGTETQEETNNRDSGSVCA 424

[Close]

BLAST of Sed0015238 vs. NCBI nr
Match: TYK09788.1 (putative NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 6.9e-05
Identity = 48/152 (31.58%), Postives = 53/152 (34.87%), Query Frame = 0


Query: 4   GHEKNSRTFLIKHLNIVDPLQENNNLCLSVSK---------------------------- 63
           G+E NSR F IKHLNIVDPL+ENNNL  SVSK                            
Sbjct: 305 GYEANSRAFPIKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFSYGARKLGFILSHPEDNV 364

Query: 64  -------------------------------------------------------GPVCS 73
                                                                  G VC+
Sbjct: 365 VDEVRKFFSNTLDRHGGGQRPDVQDPAPVSGGYESCAALLVSGTETQEETNNRDSGSVCA 424

[Close]

BLAST of Sed0015238 vs. ExPASy TrEMBL
Match: A0A0A0KXT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G332120 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.4e-06
Identity = 49/152 (32.24%), Postives = 54/152 (35.53%), Query Frame = 0


Query: 4   GHEKNSRTFLIKHLNIVDPLQENNNLCLSVSK---------------------------- 63
           G+E NSR F IKHLNIVDPL+ENNNL  SVSK                            
Sbjct: 305 GYEANSRAFPIKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFSYGARKLGFILSHPEDNV 364

Query: 64  -------------------------------------------------------GPVCS 73
                                                                  G VC+
Sbjct: 365 VDEVRKFFSNTLDRHGGGQRPDVQDPAPVSGGYESCAALLVSGTETQEETNNRDSGSVCA 424

[Close]

BLAST of Sed0015238 vs. ExPASy TrEMBL
Match: A0A5D3CEY2 (Putative NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00800 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 48/152 (31.58%), Postives = 53/152 (34.87%), Query Frame = 0


Query: 4   GHEKNSRTFLIKHLNIVDPLQENNNLCLSVSK---------------------------- 63
           G+E NSR F IKHLNIVDPL+ENNNL  SVSK                            
Sbjct: 305 GYEANSRAFPIKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFSYGARKLGFILSHPEDNV 364

Query: 64  -------------------------------------------------------GPVCS 73
                                                                  G VC+
Sbjct: 365 VDEVRKFFSNTLDRHGGGQRPDVQDPAPVSGGYESCAALLVSGTETQEETNNRDSGSVCA 424

[Close]

BLAST of Sed0015238 vs. ExPASy TrEMBL
Match: A0A5A7SJL9 (Putative NT domain of poly(A) polymerase and terminal uridylyl transferase-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00090 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 48/152 (31.58%), Postives = 53/152 (34.87%), Query Frame = 0


Query: 4   GHEKNSRTFLIKHLNIVDPLQENNNLCLSVSK---------------------------- 63
           G+E NSR F IKHLNIVDPL+ENNNL  SVSK                            
Sbjct: 305 GYEANSRAFPIKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFSYGARKLGFILSHPEDNV 364

Query: 64  -------------------------------------------------------GPVCS 73
                                                                  G VC+
Sbjct: 365 VDEVRKFFSNTLDRHGGGQRPDVQDPAPVSGGYESCAALLVSGTETQEETNNRDSGSVCA 424

[Close]

BLAST of Sed0015238 vs. ExPASy TrEMBL
Match: A0A1S3CIU5 (uncharacterized protein LOC103501459 OS=Cucumis melo OX=3656 GN=LOC103501459 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.3e-05
Identity = 48/152 (31.58%), Postives = 53/152 (34.87%), Query Frame = 0


Query: 4   GHEKNSRTFLIKHLNIVDPLQENNNLCLSVSK---------------------------- 63
           G+E NSR F IKHLNIVDPL+ENNNL  SVSK                            
Sbjct: 305 GYEANSRAFPIKHLNIVDPLKENNNLGRSVSKGNFYRIRSAFSYGARKLGFILSHPEDNV 364

Query: 64  -------------------------------------------------------GPVCS 73
                                                                  G VC+
Sbjct: 365 VDEVRKFFSNTLDRHGGGQRPDVQDPAPVSGGYESCAALLVSGTETQEETNNRDSGSVCA 424

[Close]

BLAST of Sed0015238 vs. ExPASy TrEMBL
Match: A0A2N9HL20 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40283 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.2e-04
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 4  GHEKNSRTFLIKHLNIVDPLQENNNLCLSVSKG 37
          G+E NSRTF +KHLNIVDPL+ENNNL  SVSKG
Sbjct: 32 GYETNSRTFPLKHLNIVDPLKENNNLGRSVSKG 64

[Close]

BLAST of Sed0015238 vs. TAIR 10
Match: AT3G51620.1 (PAP/OAS1 substrate-binding domain superfamily )

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-05
Identity = 23/33 (69.70%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 4   GHEKNSRTFLIKHLNIVDPLQENNNLCLSVSKG 37
           G E N R F  KHLNIVDPL+E NNL  SVSKG
Sbjct: 234 GFETNPRGFQSKHLNIVDPLKETNNLGRSVSKG 266

[Close]

BLAST of Sed0015238 vs. TAIR 10
Match: AT3G51620.2 (PAP/OAS1 substrate-binding domain superfamily )

HSP 1 Score: 45.8 bits (107), Expect = 2.5e-05
Identity = 23/33 (69.70%), Postives = 24/33 (72.73%), Query Frame = 0


Query: 4   GHEKNSRTFLIKHLNIVDPLQENNNLCLSVSKG 37
           G E N R F  KHLNIVDPL+E NNL  SVSKG
Sbjct: 295 GFETNPRGFQSKHLNIVDPLKETNNLGRSVSKG 327

[Close]

BLAST of Sed0015238 vs. TAIR 10
Match: AT3G61690.1 (nucleotidyltransferases )

HSP 1 Score: 41.2 bits (95), Expect = 6.2e-04
Identity = 18/31 (58.06%), Postives = 23/31 (74.19%), Query Frame = 0


Query: 6   EKNSRTFLIKHLNIVDPLQENNNLCLSVSKG 37
           E   + F+ KH N++DPL+ENNNL  SVSKG
Sbjct: 304 EIQGQPFVSKHFNVIDPLRENNNLGRSVSKG 334

The following BLAST results are available for this feature:

BLAST of Sed0015238 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142733.1	2.8e-06	32.24	uncharacterized protein LOC101207419 [Cucumis sativus] >KGN54445.1 hypothetical ...	[more]
XP_038881653.1	1.4e-05	31.58	uncharacterized protein LOC120073103 [Benincasa hispida]	[more]
KAA0025382.1	6.9e-05	31.58	putative NT domain of poly(A) polymerase and terminal uridylyl transferase-conta...	[more]
XP_008463256.1	6.9e-05	31.58	PREDICTED: uncharacterized protein LOC103501459 [Cucumis melo]	[more]
TYK09788.1	6.9e-05	31.58	putative NT domain of poly(A) polymerase and terminal uridylyl transferase-conta...	[more]

BLAST of Sed0015238 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0015238 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXT7	1.4e-06	32.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G332120 PE=4 SV=1	[more]
A0A5D3CEY2	3.3e-05	31.58	Putative NT domain of poly(A) polymerase and terminal uridylyl transferase-conta...	[more]
A0A5A7SJL9	3.3e-05	31.58	Putative NT domain of poly(A) polymerase and terminal uridylyl transferase-conta...	[more]
A0A1S3CIU5	3.3e-05	31.58	uncharacterized protein LOC103501459 OS=Cucumis melo OX=3656 GN=LOC103501459 PE=...	[more]
A0A2N9HL20	2.2e-04	78.79	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS40283 PE=4 SV=1	[more]

BLAST of Sed0015238 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G51620.1	2.5e-05	69.70	PAP/OAS1 substrate-binding domain superfamily	[more]
AT3G51620.2	2.5e-05	69.70	PAP/OAS1 substrate-binding domain superfamily	[more]
AT3G61690.1	6.2e-04	58.06	nucleotidyltransferases	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0015238.1	Sed0015238.1	mRNA