Sed0015200 (gene) Chayote v1

Overview
NameSed0015200
Typegene
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationLG14: 5265183 .. 5267976 (+)
RNA-Seq ExpressionSed0015200
SyntenySed0015200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGTATATTCCCACTTCCTTTTCCTTAATCATTCAATCAATAAACAATGGCTCTTCCAGAAGCCTAAAAGTAACATAATAATAAACATATCATTCCTGTGTGTGCTTCATTTTTTACTTCAATCCCAGATATAAAAAAACTCCATAATTTTAGTTAATTTCTTTCAATTTCTTCTTCTCTTAATCCTTTTTTTTCAAATGGGTTTTTGGAATTGGAAGTGCTTGTTTGTTTGTTTGATTCTGGCTGCTGGAGATGTTGAAGCTGGTAGGCCATTTTCAATCTTCCCACTCAAGCTTCAGAGAGGTAATATATATATATTCTTCACATTTTTTGCTTTTGTAAGTAGTTTAGGATTAGGTTTTGTAAGGTGTGCTCGGTTAATAGCCTCCACCGCAATTCTATCATCTTCTTCGATGAATTCTATCCTTTCATTCATGACTTTCTATATCTTCTTGTTGCTCAAATCATCACAAGGGTCTTGTCCCAAATAAAGCTAGAAAATCCAAATAATATTAGTTGTGTCAAAAAAATTTGTAGAAAATTAGTATTAGAGTGAATGACCACCATTAGATTGAACTTATAATTTTTTTTCATTTTTTAATGTCCCGTGATTAATATTAGTCACATTCTACTACAATAAAATGATAATTTGTCATGCTGCATTTGCATGTTTGGCACGCGCATTTGCATGCACTCTATTTGTTTTTTGCTTACCCTTTCTGTAATAGAGTTTAATGAGAGTGCATAAAATAAACTCGAATTAAACCTTAGCCGTATTATGACATTTTGTATGTTCATTCTGTAATTCTGTATTTTGCTCTCCTTAATAAAACTTCACCTCCTCTCTACACGTGGACTAACTAACACAATGTTAGTGAACCACGTAAATTATGTATATTGTTTATTTGTCTTTTACGTTTTCTTTATCTTCGAATCGGTTGTTGATTGTCGATTTTCATAACAAGATGGATTTTGTCGACGACAAACTTAATTATTCTCTGTTGACATAGACATTATCTTTTGCCAACAGATTGATGTTGCCGTCGGTAGAGACCGCTTCTATAAAAATGACTAAAGTTAATAATCGTCATAAGACAACACTATATGCTGACGATACAAGTTTATCGTTAACATAACACTACCTTATGTTGATGGCGTAAGTTCGCCATCAGCATAGCTATTCTTTATGCCGACGACATATGTTTGCCATCAACATAACTATACTTTATGCCGACGATATAAGTTTGCCTACTAATATATGTAAATCAATAATCTTAAAAGCGGAAGCGATTAACATTTATGGATCATAATAGAATAATTAAATCAACCAAAATATCAATCAGGCATAAATATATAACCAATTCAAGAATTGTAGATAGGAAACTTACTAGATGAATCCATGCCTGAATAATACCCAGATAATAAATTTTCTGTTGTTTTATTCGTTAAAAACTCTGCTGTTTTCCAATGCCAAATTTGTATCGCTAAAAATGACTGATATCTGTACTTGATCGATCAATTGAATCAATCCCTTATTTATGGTGGTTTTTATTCAGAAAACAGAACAAAACTGCCCCACTCCTAAAAAAACTATGGAAACATCATGTTCCACTCCTAATAAAGGACCTTCCTTTTATAATTTGACACGTGTATGTCAAATTGATAAAATGTTCTTAAACTTTTCTAATATATAAAACACACTAAAATACTTAAAATTTAACAAATTGGCACGAAGAGATTTACATCCGATAATTGTTTCTTAAATACTACACTAAAAGTGATTGAAGGCTATCAGTTGAACTGATAGAAGTCTAAAGTCTATCAATTGGACTGATAGAAGCCTATGAGTTGACTGATAGAAGTATATCAATTGAACTGATAGAAGTCTAAAGTCTATCAGTTGTACTGATAGAAATCTAAAATCCATCAGTTGAATTGATAGAAGTCTAGATAGAAATTTTGGGCAAAATGTACTATGAATGAAATTATTTTAAAAAATGGGCTACAATTGTAATGAAGAGCCAAAAATATGCTATGTAGGATAAATTCCAAAAGTATTATTATAAGGGGATTTTGCATGTATGTTAAAAAAAACAAAATAATTTCATGTATAGCACAATTCCCAAACTTATTCATTTGTGGCACAAAAATGATTGAAGTCTATCAATTTGCATTGTTCAATCACTCAAAATCGATTGAAGTCTATCAGTTGAACTGATAGAAGTCTAAAGTCTATCGGTTAAACTGATAGAAGTCTCTATTAGATGAAGTGATAGAAGTCTATCAATTGAACTGATAGAAGTCTAATGATGTTAGAATAGCAATTTTGGGCAAAATGTGCTATGGATGAAATTATTTTAAAAAAATATGCTATGGATGAAATTATTTTTAAAAATGTGCTATAATTATAATGAAGAGCCAAAAATATGTTATAGAGGATAAATTCTCTATTTGATCTCATGGGGTTTTTTTTATGACAGGTTTTGGGAGCTATAATTCAGAGTTTTTTGGTACATTGGGTATTGAATGCAAATGTTGTGATGGGGTTGGAGGTAAATGCACAAGTGACTTCACTGCTTCTTGCTTTAATCTCCATTGCTCCCCTTGGAAACAACATTAAAACCAAATCCTATCTCTTTATTTCTCGGGTCAATAATATTTAGGGTGGAGAATTCGAACTCTTTTTATTGTAATTTTGAGTATATATAAATATATATTAATTAGTTAATTATCTATGATCTTCATAGCATTTTTTGTTTTGTAGTATGTATATCTCTATAATTTTCTTATAAT

mRNA sequence

GTTGTATATTCCCACTTCCTTTTCCTTAATCATTCAATCAATAAACAATGGCTCTTCCAGAAGCCTAAAAGTAACATAATAATAAACATATCATTCCTGTGTGTGCTTCATTTTTTACTTCAATCCCAGATATAAAAAAACTCCATAATTTTAGTTAATTTCTTTCAATTTCTTCTTCTCTTAATCCTTTTTTTTCAAATGGGTTTTTGGAATTGGAAGTGCTTGTTTGTTTGTTTGATTCTGGCTGCTGGAGATGTTGAAGCTGGTAGGCCATTTTCAATCTTCCCACTCAAGCTTCAGAGAGGTTTTGGGAGCTATAATTCAGAGTTTTTTGGTACATTGGGTATTGAATGCAAATGTTGTGATGGGGTTGGAGGTAAATGCACAAGTGACTTCACTGCTTCTTGCTTTAATCTCCATTGCTCCCCTTGGAAACAACATTAAAACCAAATCCTATCTCTTTATTTCTCGGGTCAATAATATTTAGGGTGGAGAATTCGAACTCTTTTTATTGTAATTTTGAGTATATATAAATATATATTAATTAGTTAATTATCTATGATCTTCATAGCATTTTTTGTTTTGTAGTATGTATATCTCTATAATTTTCTTATAAT

Coding sequence (CDS)

ATGGGTTTTTGGAATTGGAAGTGCTTGTTTGTTTGTTTGATTCTGGCTGCTGGAGATGTTGAAGCTGGTAGGCCATTTTCAATCTTCCCACTCAAGCTTCAGAGAGGTTTTGGGAGCTATAATTCAGAGTTTTTTGGTACATTGGGTATTGAATGCAAATGTTGTGATGGGGTTGGAGGTAAATGCACAAGTGACTTCACTGCTTCTTGCTTTAATCTCCATTGCTCCCCTTGGAAACAACATTAA

Protein sequence

MGFWNWKCLFVCLILAAGDVEAGRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH
Homology
[Close]
BLAST of Sed0015200 vs. NCBI nr
Match: XP_003516905.1 (uncharacterized protein LOC100806570 [Glycine max] >XP_028235471.1 uncharacterized protein LOC114415124 [Glycine soja] >KAG5060225.1 hypothetical protein JHK87_001254 [Glycine soja] >KAG5068906.1 hypothetical protein JHK85_001283 [Glycine max] >KAG5088633.1 hypothetical protein JHK86_001245 [Glycine max] >KHN45716.1 hypothetical protein glysoja_048312 [Glycine soja] >KRH75737.1 hypothetical protein GLYMA_01G105400v4 [Glycine max])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0 

Query: 1  MGFWNWKCLFVCLILAAGDVEAGRPFSI--FPLKLQRGFGSYNSEFFGTLGIECKCCDGV 60
          MG  N   + V L++      A +P  +    L L      Y S+FF TLG+ CKCCDGV
Sbjct: 1  MGIVNKARVLVVLVILIASSVAEKPSVVEARTLSLTSSHQGY-SKFFATLGLVCKCCDGV 60

Query: 61 GGKCTSDFTASCFNLHCSPWKQH 82
          GG CTS +T SC NL CSPWK H
Sbjct: 61 GGACTSTWTESCSNLQCSPWKSH 82

[Close]
BLAST of Sed0015200 vs. NCBI nr
Match: PRQ43088.1 (hypothetical protein RchiOBHm_Chr3g0464651 [Rosa chinensis])

HSP 1 Score: 73.9 bits (180), Expect = 6.9e-10
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 9  LFVCLILAAGD----VEAGRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTS 68
          L + L+  A +    VEA RP S+F    Q+G+    S+ FGTLGI C+CCDGVGG+C S
Sbjct: 13 LVILLVACASEKSLAVEA-RPLSLFS---QQGY----SKVFGTLGIACECCDGVGGECKS 72

Query: 69 DFTASCFNLHCSPWKQH 82
           +T SC +L C PWKQH
Sbjct: 73 RWTGSCSSLKCLPWKQH 81

[Close]
BLAST of Sed0015200 vs. NCBI nr
Match: KAG6595355.1 (hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 40/86 (46.51%), Postives = 52/86 (60.47%), Query Frame = 0 

Query: 4  WNWKCLFVCLILAA---GDVEAG--RPFSIFPLKLQR-GFGSYNSEFFGTLGIECKCCDG 63
          W W  + + L+ A    G V  G  R   + P+KL + GF +Y+S    TLGIECKCCD 
Sbjct: 11 WKWALVGLVLVGACFSNGVVVEGSSRRSWMLPVKLHKGGFEAYDSNMIATLGIECKCCDD 70

Query: 64 -VGGKCTSDF-TASCFNLHCSPWKQH 82
           +GGKC++ F  ASC NL CSPWK +
Sbjct: 71 EIGGKCSTHFAAASCSNLRCSPWKHY 96

[Close]
BLAST of Sed0015200 vs. NCBI nr
Match: KAB2622047.1 (hypothetical protein D8674_024229 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 9   LFVCLILAAGDVEA--GRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDF 68
           L + ++ A+G   A  GRP S+ P   Q+G+    ++ FGTLGI C+CCD  GG+CTS +
Sbjct: 60  LLLVVVFASGKSSAAEGRPLSLLP---QQGY----AQVFGTLGIVCECCD--GGECTSTW 119

Query: 69  TASCFNLHCSPWKQH 82
           T SC NL C PWKQH
Sbjct: 120 TGSCSNLTCLPWKQH 125

[Close]
BLAST of Sed0015200 vs. NCBI nr
Match: RXH81333.1 (hypothetical protein DVH24_006158 [Malus domestica])

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0 

Query: 23  GRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH 82
           GRP S+ P   Q+G+    ++ FGTLGI C+CCDG GG+CTS +  SC  L C PWKQH
Sbjct: 344 GRPLSLTP---QQGY----AKVFGTLGIVCECCDGAGGECTSTWNGSCTKLKCHPWKQH 395

[Close]
BLAST of Sed0015200 vs. ExPASy TrEMBL
Match: A0A0A0KXD1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.1e-20
Identity = 52/91 (57.14%), Postives = 64/91 (70.33%), Query Frame = 0 

Query: 1  MGFWNWKCLFVCLILAAGDVEAG--------RPFSIFP-LKLQRGF-GSYNSEFFGTLGI 60
          MGF N+KCLF+  +L       G        RPFSI P LKLQ+GF G Y+S+ F T+GI
Sbjct: 1  MGFVNFKCLFLGFLLTFVPFRNGVIVVEGSSRPFSISPILKLQKGFKGYYDSQIFATMGI 60

Query: 61 ECKCCDGVGGKCTSDFTASCFNLHCSPWKQH 82
          ECKCCD +GGKC+++FT SC NLHCSPWKQ+
Sbjct: 61 ECKCCDEIGGKCSTEFTTSCSNLHCSPWKQY 91

[Close]
BLAST of Sed0015200 vs. ExPASy TrEMBL
Match: A0A0B2SG43 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_001081 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.2e-11
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0 

Query: 1  MGFWNWKCLFVCLILAAGDVEAGRPFSI--FPLKLQRGFGSYNSEFFGTLGIECKCCDGV 60
          MG  N   + V L++      A +P  +    L L      Y S+FF TLG+ CKCCDGV
Sbjct: 1  MGIVNKARVLVVLVILIASSVAEKPSVVEARTLSLTSSHQGY-SKFFATLGLVCKCCDGV 60

Query: 61 GGKCTSDFTASCFNLHCSPWKQH 82
          GG CTS +T SC NL CSPWK H
Sbjct: 61 GGACTSTWTESCSNLQCSPWKSH 82

[Close]
BLAST of Sed0015200 vs. ExPASy TrEMBL
Match: I1J716 (Uncharacterized protein OS=Glycine max OX=3847 GN=100806570 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.2e-11
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 0 

Query: 1  MGFWNWKCLFVCLILAAGDVEAGRPFSI--FPLKLQRGFGSYNSEFFGTLGIECKCCDGV 60
          MG  N   + V L++      A +P  +    L L      Y S+FF TLG+ CKCCDGV
Sbjct: 1  MGIVNKARVLVVLVILIASSVAEKPSVVEARTLSLTSSHQGY-SKFFATLGLVCKCCDGV 60

Query: 61 GGKCTSDFTASCFNLHCSPWKQH 82
          GG CTS +T SC NL CSPWK H
Sbjct: 61 GGACTSTWTESCSNLQCSPWKSH 82

[Close]
BLAST of Sed0015200 vs. ExPASy TrEMBL
Match: A0A2P6R9H6 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0464651 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.4e-10
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 0 

Query: 9  LFVCLILAAGD----VEAGRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTS 68
          L + L+  A +    VEA RP S+F    Q+G+    S+ FGTLGI C+CCDGVGG+C S
Sbjct: 13 LVILLVACASEKSLAVEA-RPLSLFS---QQGY----SKVFGTLGIACECCDGVGGECKS 72

Query: 69 DFTASCFNLHCSPWKQH 82
           +T SC +L C PWKQH
Sbjct: 73 RWTGSCSSLKCLPWKQH 81

[Close]
BLAST of Sed0015200 vs. ExPASy TrEMBL
Match: A0A498IJA5 (PI31_Prot_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_006158 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.8e-10
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 0 

Query: 23  GRPFSIFPLKLQRGFGSYNSEFFGTLGIECKCCDGVGGKCTSDFTASCFNLHCSPWKQH 82
           GRP S+ P   Q+G+    ++ FGTLGI C+CCDG GG+CTS +  SC  L C PWKQH
Sbjct: 344 GRPLSLTP---QQGY----AKVFGTLGIVCECCDGAGGECTSTWNGSCTKLKCHPWKQH 395

The following BLAST results are available for this feature:
BLAST of Sed0015200 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_003516905.11.1e-1046.99uncharacterized protein LOC100806570 [Glycine max] >XP_028235471.1 uncharacteriz... [more]
PRQ43088.16.9e-1050.65hypothetical protein RchiOBHm_Chr3g0464651 [Rosa chinensis][more]
KAG6595355.11.5e-0946.51hypothetical protein SDJN03_11908, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAB2622047.12.0e-0949.33hypothetical protein D8674_024229 [Pyrus ussuriensis x Pyrus communis][more]
RXH81333.12.0e-0954.24hypothetical protein DVH24_006158 [Malus domestica][more]
BLAST of Sed0015200 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Sed0015200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KXD12.1e-2057.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G303090 PE=4 SV=1[more]
A0A0B2SG435.2e-1146.99Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_001081 PE=4 SV=1[more]
I1J7165.2e-1146.99Uncharacterized protein OS=Glycine max OX=3847 GN=100806570 PE=4 SV=1[more]
A0A2P6R9H63.4e-1050.65Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr3g0464651 PE=4... [more]
A0A498IJA59.8e-1054.24PI31_Prot_N domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_006158... [more]
BLAST of Sed0015200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37078FAMILY NOT NAMEDcoord: 24..81

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Sed0015200.1Sed0015200.1mRNA