Sed0014920 (gene) Chayote v1

Overview


Name	Sed0014920
Type	gene
Organism	Sechium edule (Chayote v1)
Description	cyclin-dependent protein kinase inhibitor SMR6-like
Location	LG11: 33529940 .. 33530519 (-)
RNA-Seq Expression	Sed0014920
Synteny	Sed0014920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCTTTCCACCTTTCGTCCTCTGTTTTCTTCAACCCTCTACAATTCCTCTGTTTTTCATAAACGGTTCTTCTTCTTTTTTAATCACCTTTTTGTTGGGTTTTATTTTCTTTTCATGTTTGGATTTCAAATGGGGTTTTCAAAAAAGTCCCAAATCGACGGCGGATTTGAAGCAGAGAGCAAAAAATGGGTAATCGCCGGCTTGCCGGCGAGGTCGTCGTTGAAGCCGATCAACACAAAATCAAACGGAAAAGACGGCGGCGATGACGGCGGCGACAGGTCAAGTTCGACGACGCCGACGGCGAAAGAAGCGAGAATACCGGCGAAACTGAGCTGCCCGCCGGCGCCGAGAAAGCGGAGATCAATAAAATCAAGCTCAAATCAAAATCACGTTATGGAGTTTTTCAATCCTCCGGATTTAGAATCCGTCTTCAAACTCCGAGTCTAGTAATATTCCCAATTGGGTTTGTAATATCTTACGATTTAGGGGTTTCAAATTTTCACTATGTATTTTTTGGTGCTTTTTTTAATTTTTAATTTTTTTGGGGTTTTATTAGTTTTATGTTCTTGGTAGTTTTTAG

mRNA sequence

TCCCTTTCCACCTTTCGTCCTCTGTTTTCTTCAACCCTCTACAATTCCTCTGTTTTTCATAAACGGTTCTTCTTCTTTTTTAATCACCTTTTTGTTGGGTTTTATTTTCTTTTCATGTTTGGATTTCAAATGGGGTTTTCAAAAAAGTCCCAAATCGACGGCGGATTTGAAGCAGAGAGCAAAAAATGGGTAATCGCCGGCTTGCCGGCGAGGTCGTCGTTGAAGCCGATCAACACAAAATCAAACGGAAAAGACGGCGGCGATGACGGCGGCGACAGGTCAAGTTCGACGACGCCGACGGCGAAAGAAGCGAGAATACCGGCGAAACTGAGCTGCCCGCCGGCGCCGAGAAAGCGGAGATCAATAAAATCAAGCTCAAATCAAAATCACGTTATGGAGTTTTTCAATCCTCCGGATTTAGAATCCGTCTTCAAACTCCGAGTCTAGTAATATTCCCAATTGGGTTTGTAATATCTTACGATTTAGGGGTTTCAAATTTTCACTATGTATTTTTTGGTGCTTTTTTTAATTTTTAATTTTTTTGGGGTTTTATTAGTTTTATGTTCTTGGTAGTTTTTAG

Coding sequence (CDS)

ATGTTTGGATTTCAAATGGGGTTTTCAAAAAAGTCCCAAATCGACGGCGGATTTGAAGCAGAGAGCAAAAAATGGGTAATCGCCGGCTTGCCGGCGAGGTCGTCGTTGAAGCCGATCAACACAAAATCAAACGGAAAAGACGGCGGCGATGACGGCGGCGACAGGTCAAGTTCGACGACGCCGACGGCGAAAGAAGCGAGAATACCGGCGAAACTGAGCTGCCCGCCGGCGCCGAGAAAGCGGAGATCAATAAAATCAAGCTCAAATCAAAATCACGTTATGGAGTTTTTCAATCCTCCGGATTTAGAATCCGTCTTCAAACTCCGAGTCTAG

Protein sequence

MFGFQMGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTPTAKEARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVFKLRV

Homology

[Close]

BLAST of Sed0014920 vs. NCBI nr
Match: XP_022991036.1 (cyclin-dependent protein kinase inhibitor SMR6-like [Cucurbita maxima])

HSP 1 Score: 174.9 bits (442), Expect = 3.9e-40
Identity = 92/110 (83.64%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   MFGFQMGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTT 60
           MFGFQMGFS KSQIDGGFEAE+KKWVIAG PARSSLK INTK   KD GDD G+RS STT
Sbjct: 1   MFGFQMGFSNKSQIDGGFEAETKKWVIAGFPARSSLKQINTKPKVKD-GDDDGERSCSTT 60

Query: 61  PTAKEARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVFKLRV 111
           PTAKEARIP KLSCPPAPRKRRS K SSNQNHV EFF P DLESVFKL V
Sbjct: 61  PTAKEARIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 109

[Close]

BLAST of Sed0014920 vs. NCBI nr
Match: XP_023550994.1 (cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 174.1 bits (440), Expect = 6.7e-40
Identity = 89/105 (84.76%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTPTAKE 65
           MGFSKKSQIDGGFE E KKWVIAGLPARSSLKPI TKS  KD GDD G++S STTPTAKE
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKD-GDDDGEKSRSTTPTAKE 60

Query: 66  ARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVFKLRV 111
           ARIP KLSCP APRKRRS+KSSSNQNH  EFFNPPDLESVFK+RV
Sbjct: 61  ARIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Sed0014920 vs. NCBI nr
Match: KAG7016206.1 (Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.7 bits (439), Expect = 8.7e-40
Identity = 89/105 (84.76%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTPTAKE 65
           MGFSKKSQIDGGFE E KKWVIAGLPARSSLKPI TKS  KDG DD G++S STTPTAKE
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDD-GEKSRSTTPTAKE 60

Query: 66  ARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVFKLRV 111
           ARIP KLSCP APRKRRS+KSSSNQNH  EFFNPPDLESVFK+RV
Sbjct: 61  ARIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Sed0014920 vs. NCBI nr
Match: KAG6578666.1 (Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 173.7 bits (439), Expect = 8.7e-40
Identity = 89/105 (84.76%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTPTAKE 65
           MGFSKKSQIDGGFE E KKWVIAGLPARSSLKPI TKS  KDG DD G++S STTPTAKE
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKSRAKDGEDD-GEKSRSTTPTAKE 60

Query: 66  ARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVFKLRV 111
           ARIP KLSCP APRKRRS+KSSSNQNH  EFFNPPDLESVFK+RV
Sbjct: 61  ARIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Sed0014920 vs. NCBI nr
Match: XP_022993176.1 (cyclin-dependent protein kinase inhibitor SMR6-like [Cucurbita maxima])

HSP 1 Score: 170.2 bits (430), Expect = 9.6e-39
Identity = 88/105 (83.81%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTPTAKE 65
           MGFSKKSQIDGG EAE KKWVIAGLPARSSLKPI+TKS  KDG DD  ++S STTPTAKE
Sbjct: 1   MGFSKKSQIDGGLEAEGKKWVIAGLPARSSLKPISTKSRAKDGEDD-CEKSRSTTPTAKE 60

Query: 66  ARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVFKLRV 111
           ARIP KLSCP APRKRRS+KSSSNQNH  EFFNPPDLESVFK+RV
Sbjct: 61  ARIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Sed0014920 vs. ExPASy Swiss-Prot
Match: Q29Q81 (Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 GN=SMR6 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.7e-20
Identity = 61/113 (53.98%), Postives = 74/113 (65.49%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNG-----KDGGDD--GGDRSSS 65
           MGFSKKSQ +GG E++ KKWVIAG+  R+SLKP+ TK         +  +D    +   S
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 66  TTPTAKEARIPAKLSCPPAPRKRR-SIKSSSNQNHVMEFFNPP-DLESVFKLR 110
           TTPTAKE +IP  L CPPAPRKRR ++K  SN   V EFF PP DLE+VF  R
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSNV--VREFFTPPSDLETVFLRR 111

[Close]

BLAST of Sed0014920 vs. ExPASy Swiss-Prot
Match: Q9SAD3 (Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 GN=SMR8 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-11
Identity = 46/105 (43.81%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 6   MGFSKK--SQIDGGF--EAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTP 65
           MG+S K   Q+DG      + KKWVIAG+P+RS LK IN  S G    +        TTP
Sbjct: 1   MGYSGKPHHQLDGEIRESTDGKKWVIAGIPSRSPLKQINL-SPGVTVTETEEQDQCPTTP 60

Query: 66  TAKEARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVF 107
           TA   RIP    CP AP+KR+     S      ++F+PPDLE+VF
Sbjct: 61  TAVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104

[Close]

BLAST of Sed0014920 vs. ExPASy Swiss-Prot
Match: Q1G3Y4 (Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 GN=SMR15 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-11
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 6   MGFSKKS--QIDGGFE--AESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTP 65
           MGFS K+  Q D  F    E KK VI G+   S++KPI+  S+     +D  +    TTP
Sbjct: 1   MGFSGKTYHQFDRKFSETTEGKKCVITGISLHSTVKPISLSSSAVSNTED--EDLCPTTP 60

Query: 66  TAKEARIPAKLSCPPAPRKRR-SIKSSSNQNHVMEFFNPPDLESVFKLR 110
           TA   RIP  + CPPAP+KR+ ++K S       EFF+PPDLE+VF  R
Sbjct: 61  TADSVRIPTVIPCPPAPKKRKLTLKVSYGPR---EFFSPPDLETVFIYR 104

[Close]

BLAST of Sed0014920 vs. ExPASy Swiss-Prot
Match: Q9LVX6 (Cyclin-dependent protein kinase inhibitor SMR7 OS=Arabidopsis thaliana OX=3702 GN=SMR7 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.4e-08
Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTPTAKE 65
           MG SKKSQ+    + + KK++ A    R+SLKP+ TK    +   + G      TPTA+ 
Sbjct: 1   MGISKKSQVSRELDTDGKKFIFAKTSIRASLKPVKTKLIKPERESEDG---ICITPTARG 60

Query: 66  ARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVF 107
           A+ P    CP APRKR  +    N   +  F  P D E VF
Sbjct: 61  AKTP---ECPAAPRKRPPVLKCQNNIRIEYFVPPSDFELVF 95

[Close]

BLAST of Sed0014920 vs. ExPASy Swiss-Prot
Match: F4IWB3 (Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 GN=SMR13 PE=4 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.3e-05
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 60  TPTAKEARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVF 107
           TP AK++RIP  L+CPPAP+K+R  K+   +   + FF PP++E  F
Sbjct: 56  TPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

[Close]

BLAST of Sed0014920 vs. ExPASy TrEMBL
Match: A0A6J1JPL5 (cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 GN=LOC111487749 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40
Identity = 92/110 (83.64%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   MFGFQMGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTT 60
           MFGFQMGFS KSQIDGGFEAE+KKWVIAG PARSSLK INTK   KD GDD G+RS STT
Sbjct: 1   MFGFQMGFSNKSQIDGGFEAETKKWVIAGFPARSSLKQINTKPKVKD-GDDDGERSCSTT 60

Query: 61  PTAKEARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVFKLRV 111
           PTAKEARIP KLSCPPAPRKRRS K SSNQNHV EFF P DLESVFKL V
Sbjct: 61  PTAKEARIPEKLSCPPAPRKRRSRKLSSNQNHVREFFQPSDLESVFKLLV 109

[Close]

BLAST of Sed0014920 vs. ExPASy TrEMBL
Match: A0A6J1JVL3 (cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 GN=LOC111489273 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.7e-39
Identity = 88/105 (83.81%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTPTAKE 65
           MGFSKKSQIDGG EAE KKWVIAGLPARSSLKPI+TKS  KDG DD  ++S STTPTAKE
Sbjct: 1   MGFSKKSQIDGGLEAEGKKWVIAGLPARSSLKPISTKSRAKDGEDD-CEKSRSTTPTAKE 60

Query: 66  ARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVFKLRV 111
           ARIP KLSCP APRKRRS+KSSSNQNH  EFFNPPDLESVFK+RV
Sbjct: 61  ARIPEKLSCPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Sed0014920 vs. ExPASy TrEMBL
Match: A0A6J1FHD8 (cyclin-dependent protein kinase inhibitor SMR6 OS=Cucurbita moschata OX=3662 GN=LOC111445393 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.0e-39
Identity = 87/105 (82.86%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTPTAKE 65
           MGFSKKSQIDGGFE E KKWVIAGLPARSSLKPI TK   KDG DD G++S STTPTAKE
Sbjct: 1   MGFSKKSQIDGGFEPEGKKWVIAGLPARSSLKPITTKPRAKDGEDD-GEKSHSTTPTAKE 60

Query: 66  ARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVFKLRV 111
           ARIP KL CP APRKRRS+KSSSNQNH  EFFNPPDLESVFK+RV
Sbjct: 61  ARIPEKLICPAAPRKRRSLKSSSNQNHGREFFNPPDLESVFKIRV 104

[Close]

BLAST of Sed0014920 vs. ExPASy TrEMBL
Match: A0A5D3BY33 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00180 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.7e-37
Identity = 84/105 (80.00%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTPTAKE 65
           MGFSKKSQID GFEAE KKWVIAGL ARSSLKPINTKS  K+G +DG       TPT KE
Sbjct: 1   MGFSKKSQIDSGFEAEQKKWVIAGLSARSSLKPINTKSKTKEGEEDG-----EKTPTGKE 60

Query: 66  ARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVFKLRV 111
           ARIP KL CPPAPRKRRS+KSSSNQNH+ EFFNPPDLESVFKLRV
Sbjct: 61  ARIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Sed0014920 vs. ExPASy TrEMBL
Match: A0A1S3C883 (uncharacterized protein LOC103498100 OS=Cucumis melo OX=3656 GN=LOC103498100 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.7e-37
Identity = 84/105 (80.00%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTPTAKE 65
           MGFSKKSQID GFEAE KKWVIAGL ARSSLKPINTKS  K+G +DG       TPT KE
Sbjct: 1   MGFSKKSQIDSGFEAEQKKWVIAGLSARSSLKPINTKSKTKEGEEDG-----EKTPTGKE 60

Query: 66  ARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVFKLRV 111
           ARIP KL CPPAPRKRRS+KSSSNQNH+ EFFNPPDLESVFKLRV
Sbjct: 61  ARIPEKLGCPPAPRKRRSLKSSSNQNHMREFFNPPDLESVFKLRV 100

[Close]

BLAST of Sed0014920 vs. TAIR 10
Match: AT5G40460.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27630.1); Has 87 Blast hits to 87 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 87; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-21
Identity = 61/113 (53.98%), Postives = 74/113 (65.49%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNG-----KDGGDD--GGDRSSS 65
           MGFSKKSQ +GG E++ KKWVIAG+  R+SLKP+ TK         +  +D    +   S
Sbjct: 1   MGFSKKSQFEGGLESDGKKWVIAGISIRASLKPVKTKLRAPPEIVTEVEEDCYNEEEECS 60

Query: 66  TTPTAKEARIPAKLSCPPAPRKRR-SIKSSSNQNHVMEFFNPP-DLESVFKLR 110
           TTPTAKE +IP  L CPPAPRKRR ++K  SN   V EFF PP DLE+VF  R
Sbjct: 61  TTPTAKETKIPELLECPPAPRKRRPALKCRSNV--VREFFTPPSDLETVFLRR 111

[Close]

BLAST of Sed0014920 vs. TAIR 10
Match: AT1G10690.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G60783.1); Has 59 Blast hits to 59 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-12
Identity = 46/105 (43.81%), Postives = 58/105 (55.24%), Query Frame = 0


Query: 6   MGFSKK--SQIDGGF--EAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTP 65
           MG+S K   Q+DG      + KKWVIAG+P+RS LK IN  S G    +        TTP
Sbjct: 1   MGYSGKPHHQLDGEIRESTDGKKWVIAGIPSRSPLKQINL-SPGVTVTETEEQDQCPTTP 60

Query: 66  TAKEARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVF 107
           TA   RIP    CP AP+KR+     S      ++F+PPDLE+VF
Sbjct: 61  TAVSVRIPRVPPCPAAPKKRKPSLKCSYVTVTRDYFSPPDLETVF 104

[Close]

BLAST of Sed0014920 vs. TAIR 10
Match: AT1G60783.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-12
Identity = 48/109 (44.04%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 6   MGFSKKS--QIDGGFE--AESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTP 65
           MGFS K+  Q D  F    E KK VI G+   S++KPI+  S+     +D  +    TTP
Sbjct: 1   MGFSGKTYHQFDRKFSETTEGKKCVITGISLHSTVKPISLSSSAVSNTED--EDLCPTTP 60

Query: 66  TAKEARIPAKLSCPPAPRKRR-SIKSSSNQNHVMEFFNPPDLESVFKLR 110
           TA   RIP  + CPPAP+KR+ ++K S       EFF+PPDLE+VF  R
Sbjct: 61  TADSVRIPTVIPCPPAPKKRKLTLKVSYGPR---EFFSPPDLETVFIYR 104

[Close]

BLAST of Sed0014920 vs. TAIR 10
Match: AT3G27630.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40460.1); Has 36 Blast hits to 36 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.7e-09
Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 0


Query: 6   MGFSKKSQIDGGFEAESKKWVIAGLPARSSLKPINTKSNGKDGGDDGGDRSSSTTPTAKE 65
           MG SKKSQ+    + + KK++ A    R+SLKP+ TK    +   + G      TPTA+ 
Sbjct: 1   MGISKKSQVSRELDTDGKKFIFAKTSIRASLKPVKTKLIKPERESEDG---ICITPTARG 60

Query: 66  ARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVF 107
           A+ P    CP APRKR  +    N   +  F  P D E VF
Sbjct: 61  AKTP---ECPAAPRKRPPVLKCQNNIRIEYFVPPSDFELVF 95

[Close]

BLAST of Sed0014920 vs. TAIR 10
Match: AT3G20898.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G51355.1); Has 66 Blast hits to 66 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 5.2e-06
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 0


Query: 60  TPTAKEARIPAKLSCPPAPRKRRSIKSSSNQNHVMEFFNPPDLESVF 107
           TP AK++RIP  L+CPPAP+K+R  K+   +   + FF PP++E  F
Sbjct: 56  TPKAKKSRIPEMLTCPPAPKKQRVSKNCVLRRRQIVFFAPPEIELFF 102

The following BLAST results are available for this feature:

BLAST of Sed0014920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991036.1	3.9e-40	83.64	cyclin-dependent protein kinase inhibitor SMR6-like [Cucurbita maxima]	[more]
XP_023550994.1	6.7e-40	84.76	cyclin-dependent protein kinase inhibitor SMR6 [Cucurbita pepo subsp. pepo]	[more]
KAG7016206.1	8.7e-40	84.76	Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma ...	[more]
KAG6578666.1	8.7e-40	84.76	Cyclin-dependent protein kinase inhibitor SMR6, partial [Cucurbita argyrosperma ...	[more]
XP_022993176.1	9.6e-39	83.81	cyclin-dependent protein kinase inhibitor SMR6-like [Cucurbita maxima]	[more]

BLAST of Sed0014920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q29Q81	2.7e-20	53.98	Cyclin-dependent protein kinase inhibitor SMR6 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9SAD3	1.8e-11	43.81	Cyclin-dependent protein kinase inhibitor SMR8 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q1G3Y4	2.3e-11	44.04	Cyclin-dependent protein kinase inhibitor SMR15 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LVX6	2.4e-08	37.62	Cyclin-dependent protein kinase inhibitor SMR7 OS=Arabidopsis thaliana OX=3702 G...	[more]
F4IWB3	7.3e-05	46.81	Cyclin-dependent protein kinase inhibitor SMR13 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Sed0014920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JPL5	1.9e-40	83.64	cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1JVL3	4.7e-39	83.81	cyclin-dependent protein kinase inhibitor SMR6-like OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1FHD8	8.0e-39	82.86	cyclin-dependent protein kinase inhibitor SMR6 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A5D3BY33	5.7e-37	80.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C883	5.7e-37	80.00	uncharacterized protein LOC103498100 OS=Cucumis melo OX=3656 GN=LOC103498100 PE=...	[more]

BLAST of Sed0014920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40460.1	1.9e-21	53.98	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G10690.1	1.3e-12	43.81	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G60783.1	1.7e-12	44.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G27630.1	1.7e-09	37.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G20898.1	5.2e-06	46.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..96
None	No IPR available	PANTHER	PTHR33142:SF40	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR6-RELATED	coord: 6..109
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 6..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014920.1	Sed0014920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus