Sed0014547 (gene) Chayote v1

Overview


Name	Sed0014547
Type	gene
Organism	Sechium edule (Chayote v1)
Description	histone H1-like
Location	LG11: 1980920 .. 1982314 (-)
RNA-Seq Expression	Sed0014547
Synteny	Sed0014547

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTAGATTTAACGTTTCGAGTTCGAGCTCCATTGATTCCGATCATGTCTTCCGCCGCCGACGAGCTTTCCGTCGTTGAACCGGTGAAGAAAGCTTCGAAGGCTAAGAAACCGTCTGCTGCGAAGAGGACCAAATCTTCGCCGTCTCATCCTCCTTTCTTTCAGGTCTGAGAATTGTCCTCTATTTTGTTCTATCACATCTTCATCGTAAAATAATCTTCTGATCGGACCGGACTTGGTGTTGTTTATGTGATTCATTGCCTAATCTGACCGGATTTTTTATTTGATCTGTGATTTATTGCGTAATCTGATCGGATTATGTTTTTGTTCTGTGATTTAATGTTCTAATCTCATCGGATTATGTATATGTTCTGATTTGATCGGATTCTGTATTTGCTCTGTGTTTTAATGTTCAAATCTCATCGGATTTTGTATTTGATCTGTAGATGATCAGCGAAGCGATCGTATCGCTGAAGGAAAGAACCGGATCGAGTCAATACGCGATTACGAAGTTCAACGAAGAGAAGCACAAGCAATTGCCGTCCAATTTCAGGAAGCTATTGCTCGTTCAACTGAAGAAACTAGTCGCCGCCGATAAAATCGTCAAGATCAAAAACTCCTACAAGCTTCCATCGGCGCGATCTGTGAAGGAAAAAACCGCCGCCGCCGCCTCCGCCGAAGTAGCAGCAGCGCCAGTCGCGTCTAAGAAGACTGTCGCCGCGAAATCGAAGGCCAAAACCGCCGCAAAACCTAAATCGAAACCTATGACGGTTGCCAAATCCAAGGCTGCGGCGGTGAAACCTAAGGCTGCAGAGAAGGTGAAGAAAGTTGCTCCGAAGCCAAAACCTGTAGCGAAACCTGCTAAGGCCGCGAGAACTTCATCGCGAACATCGCCGGGGAAGAGAGCTGCACCGGCGGCGAAGACAAAGAAGGTGGCGGCGAAGTCGAAGAAGATTGCAAAGTCTCCGGCGAAGAAAGTCCAGGCAAGGAAAGTCAAGAAATGAAAAGGTTAGTGTGTTTTTGATTAATTTCTAGGGTTTGTTTGTTGTTAGCGATGTAAAATAGGGTACATTAGGATTGAAATCGTTGCTATAATATACTTGGTTTTCAAATTCACTTTGATGAATTCAAAGGTTCATCAGATTATTAATCTCTTTATCTAAGGTTGTTCAATGCTGAGATTCTGTGAGTTTGATTTATTTATTTATTTGAGTTTAAAGCTTCTATCGTAGCTTCAATGGCGGATTTCCCGTTTCAGAAGTTTTGTTTTTGTCGATGTTTTATATCTAAATCCGTAACGTCGTTTCTCATTCCGTTGTGCGCTGTTACAATCCACGTTGGATTTAATTTTGGTTTTTTTTTAAAGAATAATTTGGGTTTATGTTTACATT

mRNA sequence

TCTCTCTCTAGATTTAACGTTTCGAGTTCGAGCTCCATTGATTCCGATCATGTCTTCCGCCGCCGACGAGCTTTCCGTCGTTGAACCGGTGAAGAAAGCTTCGAAGGCTAAGAAACCGTCTGCTGCGAAGAGGACCAAATCTTCGCCGTCTCATCCTCCTTTCTTTCAGATGATCAGCGAAGCGATCGTATCGCTGAAGGAAAGAACCGGATCGAGTCAATACGCGATTACGAAGTTCAACGAAGAGAAGCACAAGCAATTGCCGTCCAATTTCAGGAAGCTATTGCTCGTTCAACTGAAGAAACTAGTCGCCGCCGATAAAATCGTCAAGATCAAAAACTCCTACAAGCTTCCATCGGCGCGATCTGTGAAGGAAAAAACCGCCGCCGCCGCCTCCGCCGAAGTAGCAGCAGCGCCAGTCGCGTCTAAGAAGACTGTCGCCGCGAAATCGAAGGCCAAAACCGCCGCAAAACCTAAATCGAAACCTATGACGGTTGCCAAATCCAAGGCTGCGGCGGTGAAACCTAAGGCTGCAGAGAAGGTGAAGAAAGTTGCTCCGAAGCCAAAACCTGTAGCGAAACCTGCTAAGGCCGCGAGAACTTCATCGCGAACATCGCCGGGGAAGAGAGCTGCACCGGCGGCGAAGACAAAGAAGGTGGCGGCGAAGTCGAAGAAGATTGCAAAGTCTCCGGCGAAGAAAGTCCAGGCAAGGAAAGTCAAGAAATGAAAAGGTTAGTGTGTTTTTGATTAATTTCTAGGGTTTGTTTGTTGTTAGCGATGTAAAATAGGGTACATTAGGATTGAAATCGTTGCTATAATATACTTGGTTTTCAAATTCACTTTGATGAATTCAAAGGTTCATCAGATTATTAATCTCTTTATCTAAGGTTGTTCAATGCTGAGATTCTGTGAGTTTGATTTATTTATTTATTTGAGTTTAAAGCTTCTATCGTAGCTTCAATGGCGGATTTCCCGTTTCAGAAGTTTTGTTTTTGTCGATGTTTTATATCTAAATCCGTAACGTCGTTTCTCATTCCGTTGTGCGCTGTTACAATCCACGTTGGATTTAATTTTGGTTTTTTTTTAAAGAATAATTTGGGTTTATGTTTACATT

Coding sequence (CDS)

ATGTCTTCCGCCGCCGACGAGCTTTCCGTCGTTGAACCGGTGAAGAAAGCTTCGAAGGCTAAGAAACCGTCTGCTGCGAAGAGGACCAAATCTTCGCCGTCTCATCCTCCTTTCTTTCAGATGATCAGCGAAGCGATCGTATCGCTGAAGGAAAGAACCGGATCGAGTCAATACGCGATTACGAAGTTCAACGAAGAGAAGCACAAGCAATTGCCGTCCAATTTCAGGAAGCTATTGCTCGTTCAACTGAAGAAACTAGTCGCCGCCGATAAAATCGTCAAGATCAAAAACTCCTACAAGCTTCCATCGGCGCGATCTGTGAAGGAAAAAACCGCCGCCGCCGCCTCCGCCGAAGTAGCAGCAGCGCCAGTCGCGTCTAAGAAGACTGTCGCCGCGAAATCGAAGGCCAAAACCGCCGCAAAACCTAAATCGAAACCTATGACGGTTGCCAAATCCAAGGCTGCGGCGGTGAAACCTAAGGCTGCAGAGAAGGTGAAGAAAGTTGCTCCGAAGCCAAAACCTGTAGCGAAACCTGCTAAGGCCGCGAGAACTTCATCGCGAACATCGCCGGGGAAGAGAGCTGCACCGGCGGCGAAGACAAAGAAGGTGGCGGCGAAGTCGAAGAAGATTGCAAAGTCTCCGGCGAAGAAAGTCCAGGCAAGGAAAGTCAAGAAATGA

Protein sequence

MSSAADELSVVEPVKKASKAKKPSAAKRTKSSPSHPPFFQMISEAIVSLKERTGSSQYAITKFNEEKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSYKLPSARSVKEKTAAAASAEVAAAPVASKKTVAAKSKAKTAAKPKSKPMTVAKSKAAAVKPKAAEKVKKVAPKPKPVAKPAKAARTSSRTSPGKRAAPAAKTKKVAAKSKKIAKSPAKKVQARKVKK

Homology

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BLAST of Sed0014547 vs. NCBI nr
Match: XP_004139246.1 (histone H1 [Cucumis sativus] >KAE8651556.1 hypothetical protein Csa_019256 [Cucumis sativus])

HSP 1 Score: 246.1 bits (627), Expect = 2.8e-61
Identity = 177/263 (67.30%), Postives = 193/263 (73.38%), Query Frame = 0


Query: 1   MSSAADEL--------SVVEPVK-----------KASKAKKPSAAKRTKSSPSHPPFFQM 60
           MSSAAD +        +V +P +           KASKAKKPS AK+ +SSP+HPPF QM
Sbjct: 1   MSSAADSVIISDAPAAAVAQPAENDSKAKKAAASKASKAKKPSGAKKARSSPTHPPFLQM 60

Query: 61  ISEAIVSLKERTGSSQYAITKFNEEKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSYKL 120
           ISEAIVSLKERTGSSQYAITKF EEKHKQLPSNFRKLLLV LKKLVAA+K+VK+KNSYKL
Sbjct: 61  ISEAIVSLKERTGSSQYAITKFTEEKHKQLPSNFRKLLLVHLKKLVAAEKLVKVKNSYKL 120

Query: 121 PSARSVKEKTAAAASAEVAA-APVAS-------KKTVAAKSKAKTAAKP------KSKPM 180
           PSARS++ K AAAA+A V A  PV+S       KK   AKSKAKTAAKP      K KP 
Sbjct: 121 PSARSIQAKAAAAAAAPVTAKKPVSSKLKAASIKKAAVAKSKAKTAAKPKPKAVAKPKPK 180

Query: 181 TVAKSKA-----AAVKPKAAEKVKKVAPKPKPVAKPAKAARTSSRTSPGKRAAPAAKTKK 226
           TVAKSK       A K KAAEKVKKVAPKPKP AK AK A+T SRTSPGKRAAPA K KK
Sbjct: 181 TVAKSKTVAKPKTAAKTKAAEKVKKVAPKPKPAAKAAKVAKTLSRTSPGKRAAPATKAKK 240

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BLAST of Sed0014547 vs. NCBI nr
Match: XP_023521173.1 (histone H1-like [Cucurbita pepo subsp. pepo] >XP_023521452.1 histone H1-like [Cucurbita pepo subsp. pepo] >XP_023547297.1 histone H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 240.4 bits (612), Expect = 1.6e-59
Identity = 169/238 (71.01%), Postives = 183/238 (76.89%), Query Frame = 0


Query: 6   DELSVVEPVKKASKAKKPSAAKRTKSSPSHPPFFQMISEAIVSLKERTGSSQYAITKFNE 65
           D  S      KASKAKKPS AKRT+SSP+HPPFF+MISEAIVSLKERTGSSQYAITKF+E
Sbjct: 27  DSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYAITKFSE 86

Query: 66  EKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSYKLPSARSVKEKTAAA-------ASAE 125
           EKHKQLPSNFRKLLLV LKKLVAADK+VK+KNSYKLPSARS   K AAA       AS++
Sbjct: 87  EKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARS---KAAAAPVVAKKPASSK 146

Query: 126 VAAAPVASKKTVAAKSKAKTAAKPK----SKPMTVAKSKAAA-------VKPKAAEKVKK 185
           + AA V+ KK   AK KAKTA KPK    +KP   AKSK  A        K KAAEKVKK
Sbjct: 147 LKAA-VSVKKAAVAKPKAKTAVKPKPKVVAKPKAAAKSKVVAKPKAVAPAKRKAAEKVKK 206

Query: 186 VAPKPKPVAKPAKAARTSSRTSPGKRAAPAAKTKKVAAKSKKIAKSPAKKVQARKVKK 226
           VAPKPKP AKPAK A+T SRTSPGK+AAPAAK KKVAAK  K  KSPA+KVQARKVKK
Sbjct: 207 VAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 260

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BLAST of Sed0014547 vs. NCBI nr
Match: KAG6599320.1 (Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 240.0 bits (611), Expect = 2.0e-59
Identity = 176/264 (66.67%), Postives = 194/264 (73.48%), Query Frame = 0


Query: 1   MSSAADEL----------SVVEPVK-----------KASKAKKPSAAKRTKSSPSHPPFF 60
           MSSAAD +          +V +PV+           KASKAKKPS AKRT+SSP+HPPFF
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFNEEKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHKQLPSNFRKLLLV LKKLVAADK+VK+KNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSVKEKTAAA-------ASAEVAAAPVASKKTVAAKSKAKTAAKPK----SKPMT 180
           KLPSARS   K AAA       AS+++ AA V+ KK   AK KAKTA KPK    +KP  
Sbjct: 121 KLPSARS---KAAAAPVVAKKPASSKLKAA-VSVKKAAVAKPKAKTAVKPKPKAVAKPKA 180

Query: 181 VAKSKAAA-------VKPKAAEKVKKVAPKPKPVAKPAKAARTSSRTSPGKRAAPAAKTK 226
            AKSK  A        K KAAEKVKKVAPKPKP AKPAK A+T SRTSPGK+AAPAAK K
Sbjct: 181 AAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAK 240

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BLAST of Sed0014547 vs. NCBI nr
Match: XP_022946127.1 (histone H1-like [Cucurbita moschata] >KAG7030316.1 Histone H1.2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 238.8 bits (608), Expect = 4.5e-59
Identity = 175/264 (66.29%), Postives = 195/264 (73.86%), Query Frame = 0


Query: 1   MSSAADEL----------SVVEPVK-----------KASKAKKPSAAKRTKSSPSHPPFF 60
           MSSAAD +          +V +PV+           KASKAKKPS AKRT+SSP+HPPFF
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFNEEKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHK+LPSNFRKLLLV LKKLVAADK+VK+KNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSVKEKTAAA-------ASAEVAAAPVASKKTVAAKSKAKTAAKPK----SKPMT 180
           KLPSARS   K AAA       AS+++ AA V+ KK   AK KAKTA KPK    +KP +
Sbjct: 121 KLPSARS---KAAAAPVVAKKPASSKLKAA-VSVKKAAVAKPKAKTAVKPKPKAVAKPKS 180

Query: 181 VAKSKAAA-------VKPKAAEKVKKVAPKPKPVAKPAKAARTSSRTSPGKRAAPAAKTK 226
            AKSK  A        K KAAEKVKKVAPKPKP AKPAK A+T SRTSPGK+AAPAAK K
Sbjct: 181 AAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAK 240

[Close]

BLAST of Sed0014547 vs. NCBI nr
Match: XP_022999095.1 (histone H1-like [Cucurbita maxima])

HSP 1 Score: 238.0 bits (606), Expect = 7.7e-59
Identity = 168/238 (70.59%), Postives = 182/238 (76.47%), Query Frame = 0


Query: 6   DELSVVEPVKKASKAKKPSAAKRTKSSPSHPPFFQMISEAIVSLKERTGSSQYAITKFNE 65
           D  S      KASKAKKPS AKRT+SSP+HPPFF+MISEAIVSLKERTGSSQYAITKF+E
Sbjct: 27  DSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYAITKFSE 86

Query: 66  EKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSYKLPSARSVKEKTAAA-------ASAE 125
           EKHKQLPSNFRKLLLV LKKLVAADK+VK+KNSYKLPSARS   K AAA       AS++
Sbjct: 87  EKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARS---KAAAAPVVAKKPASSK 146

Query: 126 VAAAPVASKKTVAAKSKAKTAAKPK----SKPMTVAKSK-------AAAVKPKAAEKVKK 185
           + AA V+ KK   AK KAKTA KPK    +KP   AKSK        A  K KAAEKVKK
Sbjct: 147 LKAA-VSVKKAAVAKPKAKTAVKPKPKVVAKPKAAAKSKVVGKPKAVAPAKRKAAEKVKK 206

Query: 186 VAPKPKPVAKPAKAARTSSRTSPGKRAAPAAKTKKVAAKSKKIAKSPAKKVQARKVKK 226
           VAPKPKP AKPAK A+T SR SPGK+AAPAAK KKVAAK  K  KSPA+KVQARKVKK
Sbjct: 207 VAPKPKPAAKPAKVAKTLSRASPGKKAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 260

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BLAST of Sed0014547 vs. ExPASy Swiss-Prot
Match: P26569 (Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 1.5e-33
Identity = 128/248 (51.61%), Postives = 154/248 (62.10%), Query Frame = 0


Query: 12  EPVKKASKAKKPSAAKRT------------KSSPSHPPFFQMISEAIVSLKERTGSSQYA 71
           +P  K  K+KK + AK T            K++ SHP + +MI +AIV+LKERTGSSQYA
Sbjct: 27  KPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYA 86

Query: 72  ITKFNEEKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSYKLPSARS---------VKEK 131
           I KF EEKHK LP  FRKLLLV LK+LVA++K+VK+K S+K+PSARS         VK+K
Sbjct: 87  IQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAPVKKK 146

Query: 132 TAAAA--SAEVAAAPVASKKTVAAKSKAKTAAKPKSKPMTVAKSKA--AAVKPK-----A 191
               A    +VAAA   +K   AAK   K AAK  +K    AK KA   A KPK     A
Sbjct: 147 ATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVAA 206

Query: 192 AEKVKKVAPKPKPVAKPAKAARTSSRTSPGKR-AAPAAK---TKKVAAKSKKIAKSPAKK 226
             K K VA KPK   +PAKA+RTS+RTSPGK+ AAPA K   TKK  AKS K+ KSPAK+
Sbjct: 207 VSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKV-KSPAKR 266

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BLAST of Sed0014547 vs. ExPASy Swiss-Prot
Match: P37218 (Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-32
Identity = 120/252 (47.62%), Postives = 153/252 (60.71%), Query Frame = 0


Query: 15  KKASKAKKPSAAKRTKSSPSHPPFFQMISEAIVSLKERTGSSQYAITKFNEEKHKQLPSN 74
           KK +KAKKP+A ++  ++P+HPP+F+MI +AIV+LKERTGSSQ+AITKF EEK K LPSN
Sbjct: 36  KKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSN 95

Query: 75  FRKLLLVQLKKLVAADKIVKIKNSYKLPSA--------------------------RSVK 134
           F+KLLL QLKK VA++K+VK+KNSYKLPS                            +VK
Sbjct: 96  FKKLLLTQLKKFVASEKLVKVKNSYKLPSGSKPAAAAVPAKKKPAAAKSKPAAKPKAAVK 155

Query: 135 EKTAAAASAEVAA-APVASKKTVAAKSKAKTAAKPKSKPMTVAKSK---AAAVKPKAAEK 194
            K   AA A+ AA A  A+K   AAK+K    AKP +K   VAK+K   AAA KPKAA K
Sbjct: 156 PKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPAAKAKPVAKAKPKAAAAAKPKAAVK 215

Query: 195 VKKVAPKPKPVAKP--------AKAARTSSRTSPGKRAAP---AAKTKKVAAKSKKIAKS 226
            K    K K   KP        AK A+T++RT+P ++AAP    AK + V     K  KS
Sbjct: 216 PKAAPAKTKAAVKPNLKAKTTTAKVAKTATRTTPSRKAAPKATPAKKEPVKKAPAKNVKS 275

[Close]

BLAST of Sed0014547 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.4e-31
Identity = 117/219 (53.42%), Postives = 139/219 (63.47%), Query Frame = 0


Query: 5   ADELSVVEPVKKASKAKKPSAAKRTKSSPSHPPFFQMISEAIVSLKERTGSSQYAITKFN 64
           A  + V +  KK   AKKP    ++K + SHP FF+MIS+AI +LKERTGSSQYAI KF 
Sbjct: 25  AAAVKVPKEKKKVIAAKKP----KSKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFV 84

Query: 65  EEKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSYKLPSARSVKEKTAAAASAEVAAAPV 124
           E+KHKQLPSNFRKLLL  LKKLVA+ K+VK+KNS+KLPSAR       AA +  +A  P 
Sbjct: 85  EDKHKQLPSNFRKLLLFHLKKLVASGKLVKVKNSFKLPSAR-------AAPAPALAKKPT 144

Query: 125 ASKKTVAAKSK-AKTAAKPKSKPMTVAKSKA----AAVKPKAAEKVKKVAPKPKPV-AKP 184
             K  VAAK K AK  AKPK+K    AK+KA     A K  AA+   K A KPK V AKP
Sbjct: 145 IPKPKVAAKPKTAKIGAKPKAKAKVAAKTKATTKTVAKKIPAAKPKAKTAGKPKTVAAKP 204

Query: 185 AKAARTSSRTSPGKRAAPAAKTKKVAAKSKKIAKSPAKK 218
           AK A+T++  SPGK+       K V  K  K  KSPA K
Sbjct: 205 AKVAKTAAVASPGKK-------KAVPVKKVKTVKSPAGK 225

[Close]

BLAST of Sed0014547 vs. ExPASy Swiss-Prot
Match: P23444 (Histone H1 OS=Zea mays OX=4577 PE=2 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-27
Identity = 114/221 (51.58%), Postives = 139/221 (62.90%), Query Frame = 0


Query: 17  ASKAKKPSAAKRTKSSPSHPPFFQMISEAIVSLKERTGSSQYAITKFNEEKHK-QLPSNF 76
           A+KAKK +A K+ ++SP+H P+ +M+SEAI SLKERTGSS YAI KF E+KHK +LP NF
Sbjct: 33  AAKAKKATAPKK-RASPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNF 92

Query: 77  RKLLLVQLKKLVAADKIVKIKNSYKLPSARSVKEKTAAA-----ASAEVAAAPVASKKTV 136
           RKLL VQLKKLVA  K+ K+KNSYKL SA     K  AA       A+   A    K   
Sbjct: 93  RKLLNVQLKKLVAGGKLTKVKNSYKLSSATKPNPKPKAAPKKPKTGAKKPKAAAKPKAKT 152

Query: 137 AAKSKAKTAAKPKSKPMTVAKSKAAA---VKPKAAEKVKKVAPKPKPVAKP---AKAART 196
            AK+K  T  KP +KP  V K K  A    KP A  K K    KPKP+AK    AKAA+T
Sbjct: 153 PAKAKPATKPKPAAKPKAVVKPKTPAKPKAKPAAKAKPKTAGAKPKPLAKKAGRAKAAKT 212

Query: 197 SSRTSPGKRAAPAAKTKKVAAKSKKIAKSPAKKVQARKVKK 226
           S++ +PGK+ APA K    AA SKK A +P +K  +RK KK
Sbjct: 213 SAKDTPGKK-APAKK----AAPSKK-AATPVRKAPSRKAKK 246

[Close]

BLAST of Sed0014547 vs. ExPASy Swiss-Prot
Match: P08283 (Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-27
Identity = 114/226 (50.44%), Postives = 138/226 (61.06%), Query Frame = 0


Query: 11  VEPVKKASKAKKPSAAKRTKSSPSHPPFFQMISEAIVSLKERTGSSQYAITKFNEEKHKQ 70
           VE  KKA K  KP  A + ++  SHP + +MI +AIVSLKE+ GSSQYAI KF EEK KQ
Sbjct: 39  VEKTKKA-KGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQ 98

Query: 71  LPSNFRKLLLVQLKKLVAADKIVKIKNSYKLPSARSVKEKTAAAASAEVAAAPVASKKTV 130
           LP+NF+KLLL  LKK VA+ K++K+K S+KL +A   K+   A   A+ AA   + K   
Sbjct: 99  LPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAA--AKKPAVAKPKAKTAAKAKSVKAKP 158

Query: 131 AAKSKAKTAAKPK--SKPMTV-AKSKAAAVKPK-AAEKVKKVAPKPKPV------AKPAK 190
           AAK KAK   KPK  SK   V AK K AA KPK  A K K  A KPK V       KPAK
Sbjct: 159 AAKPKAKAVVKPKVASKAKAVAAKPKKAAAKPKTVAAKTKPTAAKPKAVVKPKSKVKPAK 218

Query: 191 AARTSSRTSPGKRAAPAAK--TKKVAAKS--KKIAKSPAKKVQARK 223
            A+TS +T+PGK+ A   K   KKV  KS   K  KSP KKV  ++
Sbjct: 219 VAKTSVKTTPGKKVAAVKKVAAKKVPVKSVKAKSVKSPVKKVSVKR 261

[Close]

BLAST of Sed0014547 vs. ExPASy TrEMBL
Match: A0A6J1G2W2 (histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.2e-59
Identity = 175/264 (66.29%), Postives = 195/264 (73.86%), Query Frame = 0


Query: 1   MSSAADEL----------SVVEPVK-----------KASKAKKPSAAKRTKSSPSHPPFF 60
           MSSAAD +          +V +PV+           KASKAKKPS AKRT+SSP+HPPFF
Sbjct: 1   MSSAADPVASSDAPATVAAVAQPVENDSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFF 60

Query: 61  QMISEAIVSLKERTGSSQYAITKFNEEKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSY 120
           +MISEAIVSLKERTGSSQYAITKF+EEKHK+LPSNFRKLLLV LKKLVAADK+VK+KNSY
Sbjct: 61  EMISEAIVSLKERTGSSQYAITKFSEEKHKKLPSNFRKLLLVHLKKLVAADKLVKVKNSY 120

Query: 121 KLPSARSVKEKTAAA-------ASAEVAAAPVASKKTVAAKSKAKTAAKPK----SKPMT 180
           KLPSARS   K AAA       AS+++ AA V+ KK   AK KAKTA KPK    +KP +
Sbjct: 121 KLPSARS---KAAAAPVVAKKPASSKLKAA-VSVKKAAVAKPKAKTAVKPKPKAVAKPKS 180

Query: 181 VAKSKAAA-------VKPKAAEKVKKVAPKPKPVAKPAKAARTSSRTSPGKRAAPAAKTK 226
            AKSK  A        K KAAEKVKKVAPKPKP AKPAK A+T SRTSPGK+AAPAAK K
Sbjct: 181 AAKSKVVAKPKAVAPAKRKAAEKVKKVAPKPKPAAKPAKVAKTLSRTSPGKKAAPAAKAK 240

[Close]

BLAST of Sed0014547 vs. ExPASy TrEMBL
Match: A0A6J1KEC3 (histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 3.7e-59
Identity = 168/238 (70.59%), Postives = 182/238 (76.47%), Query Frame = 0


Query: 6   DELSVVEPVKKASKAKKPSAAKRTKSSPSHPPFFQMISEAIVSLKERTGSSQYAITKFNE 65
           D  S      KASKAKKPS AKRT+SSP+HPPFF+MISEAIVSLKERTGSSQYAITKF+E
Sbjct: 27  DSKSKKAAASKASKAKKPSGAKRTRSSPTHPPFFEMISEAIVSLKERTGSSQYAITKFSE 86

Query: 66  EKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSYKLPSARSVKEKTAAA-------ASAE 125
           EKHKQLPSNFRKLLLV LKKLVAADK+VK+KNSYKLPSARS   K AAA       AS++
Sbjct: 87  EKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARS---KAAAAPVVAKKPASSK 146

Query: 126 VAAAPVASKKTVAAKSKAKTAAKPK----SKPMTVAKSK-------AAAVKPKAAEKVKK 185
           + AA V+ KK   AK KAKTA KPK    +KP   AKSK        A  K KAAEKVKK
Sbjct: 147 LKAA-VSVKKAAVAKPKAKTAVKPKPKVVAKPKAAAKSKVVGKPKAVAPAKRKAAEKVKK 206

Query: 186 VAPKPKPVAKPAKAARTSSRTSPGKRAAPAAKTKKVAAKSKKIAKSPAKKVQARKVKK 226
           VAPKPKP AKPAK A+T SR SPGK+AAPAAK KKVAAK  K  KSPA+KVQARKVKK
Sbjct: 207 VAPKPKPAAKPAKVAKTLSRASPGKKAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 260

[Close]

BLAST of Sed0014547 vs. ExPASy TrEMBL
Match: A0A5D3D4H1 (Histone H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001600 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 3.2e-58
Identity = 166/239 (69.46%), Postives = 176/239 (73.64%), Query Frame = 0


Query: 6   DELSVVEPVKKASKAKKPSAAKRTKSSPSHPPFFQMISEAIVSLKERTGSSQYAITKFNE 65
           D  S      KASKAKKPS AK+ +SSP+HPPF QMISEAIVSLKERTGSSQYAITKF E
Sbjct: 28  DSKSKKAAASKASKAKKPSGAKKARSSPTHPPFLQMISEAIVSLKERTGSSQYAITKFTE 87

Query: 66  EKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSYKLPSARSVKEKTAAAASAEVAAAPVA 125
           EKHKQLPSNFRKLLLV LKKLVAADK+VK+KNSYKLPSARS++ K AAAA       PV+
Sbjct: 88  EKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSIQAKAAAAAPV-ATKKPVS 147

Query: 126 S--------KKTVAAKSKAKTAAKP------KSKPMTVAKSKA-----AAVKPKAAEKVK 185
           S        KK   AK KAKTAAKP      K KP TV KSK       A K KAAEKVK
Sbjct: 148 SKLKAVASIKKPAVAKPKAKTAAKPKPKAVAKPKPKTVTKSKTVAKPKTAAKTKAAEKVK 207

Query: 186 KVAPKPKPVAKPAKAARTSSRTSPGKRAAPAAKTKKVAAKSKKIAKSPAKKVQARKVKK 226
           KVAPKPK  AK  K A+T SRTSPGKRAAPAAK KKVAAK  K  KSPA+KVQARKVKK
Sbjct: 208 KVAPKPKAGAKATKVAKTLSRTSPGKRAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of Sed0014547 vs. ExPASy TrEMBL
Match: A0A6J1CNP7 (histone H1-like OS=Momordica charantia OX=3673 GN=LOC111012938 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 7.0e-58
Identity = 166/249 (66.67%), Postives = 185/249 (74.30%), Query Frame = 0


Query: 2   SSAADELSVVEPVK-------KASKAKKPSAAKRTKSSPSHPPFFQMISEAIVSLKERTG 61
           + AA+ L+V    K       KASKAKKPS AKR KSSP+HPPFFQMISEAIVSLKERTG
Sbjct: 16  ADAAEVLTVANDAKPKKAASSKASKAKKPSGAKRPKSSPTHPPFFQMISEAIVSLKERTG 75

Query: 62  SSQYAITKFNEEKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSYKLPSARSVKEKTAA- 121
           SSQYAITKF+EEKHKQLPSNFRKLLLV LKKLVAADK+VK+KNSYKLPSARS++ K AA 
Sbjct: 76  SSQYAITKFSEEKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSIQAKAAAP 135

Query: 122 -----AASAEVAAAPVASKKTVAAKSKAKTAAKPKS----KPMTVAKSK--------AAA 181
                 AS+++ AA    KK    K KAKTA KPK     KP T++KSK        AAA
Sbjct: 136 VAAKKPASSKLKAAASVKKKAAVVKPKAKTAVKPKPKAVVKPKTISKSKVVAKPKAAAAA 195

Query: 182 VKPKAAEKVKKVAPKPKPVAKPAKAARTSSRTSPGKRAAPAAKTKKVAAKSKKIAKSPAK 226
            KPKAA KV K A K KP A+PAK A+T ++TSPGKRAAPAAK KKVAAK  K  KSPA+
Sbjct: 196 AKPKAAAKV-KAAAKAKPAARPAKVAKTLTQTSPGKRAAPAAKAKKVAAKKPKTVKSPAR 255

[Close]

BLAST of Sed0014547 vs. ExPASy TrEMBL
Match: A0A1S3C278 (histone H1-like OS=Cucumis melo OX=3656 GN=LOC103496189 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 2.7e-57
Identity = 165/239 (69.04%), Postives = 175/239 (73.22%), Query Frame = 0


Query: 6   DELSVVEPVKKASKAKKPSAAKRTKSSPSHPPFFQMISEAIVSLKERTGSSQYAITKFNE 65
           D  S      KASKAKKPS AK+ +SSP+HPPF QMISEAIVSLKERTGSSQYAITKF E
Sbjct: 28  DSKSKKAAASKASKAKKPSGAKKARSSPTHPPFLQMISEAIVSLKERTGSSQYAITKFTE 87

Query: 66  EKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSYKLPSARSVKEKTAAAASAEVAAAPVA 125
           EKHKQLPSNFRKLLLV LKKLVAADK+VK+KNSYKLPSARS++ K AAAA       PV+
Sbjct: 88  EKHKQLPSNFRKLLLVHLKKLVAADKLVKVKNSYKLPSARSIQAKAAAAAPV-ATKKPVS 147

Query: 126 S--------KKTVAAKSKAKTAAK------PKSKPMTVAKSKA-----AAVKPKAAEKVK 185
           S        KK   AK KAKTAAK       K KP TV KSK       A K KAAEKVK
Sbjct: 148 SKLKAVASIKKPAVAKPKAKTAAKSKPKAVAKPKPKTVTKSKTVAKPKTAAKTKAAEKVK 207

Query: 186 KVAPKPKPVAKPAKAARTSSRTSPGKRAAPAAKTKKVAAKSKKIAKSPAKKVQARKVKK 226
           KVAPKPK  AK  K A+T SRTSPGKRAAPAAK KKVAAK  K  KSPA+KVQARKVKK
Sbjct: 208 KVAPKPKAGAKATKVAKTLSRTSPGKRAAPAAKAKKVAAKKPKTVKSPARKVQARKVKK 265

[Close]

BLAST of Sed0014547 vs. TAIR 10
Match: AT2G30620.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-34
Identity = 128/248 (51.61%), Postives = 154/248 (62.10%), Query Frame = 0


Query: 12  EPVKKASKAKKPSAAKRT------------KSSPSHPPFFQMISEAIVSLKERTGSSQYA 71
           +P  K  K+KK + AK T            K++ SHP + +MI +AIV+LKERTGSSQYA
Sbjct: 27  KPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYA 86

Query: 72  ITKFNEEKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSYKLPSARS---------VKEK 131
           I KF EEKHK LP  FRKLLLV LK+LVA++K+VK+K S+K+PSARS         VK+K
Sbjct: 87  IQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARSAATPKPAAPVKKK 146

Query: 132 TAAAA--SAEVAAAPVASKKTVAAKSKAKTAAKPKSKPMTVAKSKA--AAVKPK-----A 191
               A    +VAAA   +K   AAK   K AAK  +K    AK KA   A KPK     A
Sbjct: 147 ATVVAKPKGKVAAAVAPAKAKAAAKGTKKPAAKVVAKAKVTAKPKAKVTAAKPKSKSVAA 206

Query: 192 AEKVKKVAPKPKPVAKPAKAARTSSRTSPGKR-AAPAAK---TKKVAAKSKKIAKSPAKK 226
             K K VA KPK   +PAKA+RTS+RTSPGK+ AAPA K   TKK  AKS K+ KSPAK+
Sbjct: 207 VSKTKAVAAKPKAKERPAKASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKV-KSPAKR 266

[Close]

BLAST of Sed0014547 vs. TAIR 10
Match: AT2G30620.2 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-26
Identity = 105/230 (45.65%), Postives = 127/230 (55.22%), Query Frame = 0


Query: 12  EPVKKASKAKKPSAAKRT------------KSSPSHPPFFQMISEAIVSLKERTGSSQYA 71
           +P  K  K+KK + AK T            K++ SHP + +MI +AIV+LKERTGSSQYA
Sbjct: 27  KPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYA 86

Query: 72  ITKFNEEKHKQLPSNFRKLLLVQLKKLVAADKIVKIKNSYKLPSARSVKEKTAAAASAEV 131
           I KF EEKHK LP  FRKLLLV LK+LVA++K+VK+K S+K+PSARS        A+   
Sbjct: 87  IQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLVKVKASFKIPSARS--------AATPK 146

Query: 132 AAAPVASKKTVAAKSKAKTAAKPKSKPMTVAKSKAAAVKPKAAEKVKKVAPKPKPVAKPA 191
            AAPV  K TV                                            VAKP 
Sbjct: 147 PAAPVKKKATV--------------------------------------------VAKP- 202

Query: 192 KAARTSSRTSPGKR-AAPAAK---TKKVAAKSKKIAKSPAKKVQARKVKK 226
           KA+RTS+RTSPGK+ AAPA K   TKK  AKS K+ KSPAK+   RK KK
Sbjct: 207 KASRTSTRTSPGKKVAAPAKKVAVTKKAPAKSVKV-KSPAKRASTRKAKK 202

[Close]

BLAST of Sed0014547 vs. TAIR 10
Match: AT1G06760.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 116.3 bits (290), Expect = 3.2e-26
Identity = 109/225 (48.44%), Postives = 139/225 (61.78%), Query Frame = 0


Query: 14  VKKASKAKKPSAAKRTKSSPSHPPFFQMISEAIVSLKERTGSSQYAITKFNEEKHKQLPS 73
           VK+  + K  +AA + ++  SHP + +MI +AIV+LKERTGSSQYAI KF EEK K+LP 
Sbjct: 41  VKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPP 100

Query: 74  NFRKLLLVQLKKLVAADKIVKIKNSYKLPSA-------RSVKEKTAAAASAEVAAAPVAS 133
            FRKLLL+ LK+LVA+ K+VK+K S+KLPSA       ++  EK+A A       A   +
Sbjct: 101 TFRKLLLLNLKRLVASGKLVKVKASFKLPSASAKASSPKAAAEKSAPAKKKPATVAVTKA 160

Query: 134 KKTVAAKSKAK--TAAKPKS----KPMTVAKSKAAAVKPKAAEKVKKVAPKPKPVAKPAK 193
           K+ VAA SKAK   A KPK+    K    AK+K       AA K K V  KPK  A+PAK
Sbjct: 161 KRKVAAASKAKKTIAVKPKTAAAKKVTAKAKAKPVPRATAAATKRKAVDAKPKAKARPAK 220

Query: 194 AARTSSRTSPGKRAAPAAKTKKVAAKSKKIAKSPAKKVQARKVKK 226
           AA+T+  TSP K+A   A TKKVA  + K  K+P KKV   K  K
Sbjct: 221 AAKTAKVTSPAKKA--VAATKKVATVATK-KKTPVKKVVKPKTVK 262

[Close]

BLAST of Sed0014547 vs. TAIR 10
Match: AT2G18050.1 (histone H1-3 )

HSP 1 Score: 75.1 bits (183), Expect = 8.0e-14
Identity = 67/159 (42.14%), Postives = 81/159 (50.94%), Query Frame = 0


Query: 14  VKKASKAKKPSAAKRTKSSPSHPPFFQMISEAIVSLKERTGSSQYAITKFNEEKHKQ-LP 73
           +KK   AKKP   K T    +HPP+FQMI EA++ LKE+ GSS YAI K  EEKHK  LP
Sbjct: 7   LKKTPAAKKPRKPKTT----THPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLP 66

Query: 74  SNFRKLLLVQLKKLVAADKIVKIKNSYKLPSARSV-----------------KEKTAAAA 133
            +FRK L +QLK  VA  K+VKI+ SYKL     +                 KE T    
Sbjct: 67  ESFRKTLSLQLKNSVAKGKLVKIRASYKLSDTTKMITRQQDKKNKKNMKQEDKEITKRTR 126

Query: 134 SAEVAAAPVASKKTVAAKSKAKTAAKPKSKPMTVAKSKA 155
           S+        S      K K K A +PKS   +V K KA
Sbjct: 127 SSSTRPKKTVSVNKQEKKRKVKKARQPKSIKSSVGKKKA 161

[Close]

BLAST of Sed0014547 vs. TAIR 10
Match: AT2G18050.2 (histone H1-3 )

HSP 1 Score: 48.5 bits (114), Expect = 8.1e-06
Identity = 54/138 (39.13%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 41  MISEAIVSLKERTGSSQYAITKFNEEKHKQ-LPSNFRKLLLVQLKKLVAADKIVKIKNSY 100
           MI EA++ LKE+ GSS YAI K  EEKHK  LP +FRK L +QLK  VA  K+VKI+ SY
Sbjct: 1   MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASY 60

Query: 101 KLPSARSV--------KEKTAAAASAEVA----AAPVASKKTVAA-KSKAKTAAKPKSKP 160
           KL     +         +K       E+     ++    KKTV+  K + K   K   +P
Sbjct: 61  KLSDTTKMITRQQDKKNKKNMKQEDKEITKRTRSSSTRPKKTVSVNKQEKKRKVKKARQP 120

Query: 161 MTVAKS--KAAAVKPKAA 163
            ++  S  K  A+K  AA
Sbjct: 121 KSIKSSVGKKKAMKASAA 138

The following BLAST results are available for this feature:

BLAST of Sed0014547 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139246.1	2.8e-61	67.30	histone H1 [Cucumis sativus] >KAE8651556.1 hypothetical protein Csa_019256 [Cucu...	[more]
XP_023521173.1	1.6e-59	71.01	histone H1-like [Cucurbita pepo subsp. pepo] >XP_023521452.1 histone H1-like [Cu...	[more]
KAG6599320.1	2.0e-59	66.67	Histone H1.2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022946127.1	4.5e-59	66.29	histone H1-like [Cucurbita moschata] >KAG7030316.1 Histone H1.2 [Cucurbita argyr...	[more]
XP_022999095.1	7.7e-59	70.59	histone H1-like [Cucurbita maxima]	[more]

BLAST of Sed0014547 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P26569	1.5e-33	51.61	Histone H1.2 OS=Arabidopsis thaliana OX=3702 GN=At2g30620 PE=1 SV=1	[more]
P37218	2.2e-32	47.62	Histone H1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1	[more]
Q9M5W4	5.4e-31	53.42	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
P23444	1.2e-27	51.58	Histone H1 OS=Zea mays OX=4577 PE=2 SV=2	[more]
P08283	2.8e-27	50.44	Histone H1 OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of Sed0014547 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2W2	2.2e-59	66.29	histone H1-like OS=Cucurbita moschata OX=3662 GN=LOC111450301 PE=3 SV=1	[more]
A0A6J1KEC3	3.7e-59	70.59	histone H1-like OS=Cucurbita maxima OX=3661 GN=LOC111493576 PE=3 SV=1	[more]
A0A5D3D4H1	3.2e-58	69.46	Histone H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G0016...	[more]
A0A6J1CNP7	7.0e-58	66.67	histone H1-like OS=Momordica charantia OX=3673 GN=LOC111012938 PE=3 SV=1	[more]
A0A1S3C278	2.7e-57	69.04	histone H1-like OS=Cucumis melo OX=3656 GN=LOC103496189 PE=3 SV=1	[more]

BLAST of Sed0014547 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30620.1	1.1e-34	51.61	winged-helix DNA-binding transcription factor family protein	[more]
AT2G30620.2	1.1e-26	45.65	winged-helix DNA-binding transcription factor family protein	[more]
AT1G06760.1	3.2e-26	48.44	winged-helix DNA-binding transcription factor family protein	[more]
AT2G18050.1	8.0e-14	42.14	histone H1-3	[more]
AT2G18050.2	8.1e-06	39.13	histone H1-3	[more]

InterPro

Analysis Name: InterPro Annotations of Chayote (edule) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005819	Linker histone H1/H5	PRINTS	PR00624	HISTONEH5	coord: 122..136 score: 34.81 coord: 21..42 score: 41.92 coord: 154..171 score: 41.36 coord: 48..65 score: 38.89 coord: 176..195 score: 25.0
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 32..98 e-value: 5.3E-30 score: 115.7
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 35..101 e-value: 7.8E-15 score: 55.0
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 34..103 score: 27.937162
IPR005818	Linker histone H1/H5, domain H15	CDD	cd00073	H15	coord: 32..110 e-value: 1.35033E-15 score: 67.6463
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 29..114 e-value: 2.6E-19 score: 71.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 202..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 15..225
None	No IPR available	PANTHER	PTHR11467:SF131	HISTONE H1.1	coord: 15..225
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 31..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014547.1	Sed0014547.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
cellular_component	GO:0000786	nucleosome
molecular_function	GO:0003677	DNA binding