Sed0014331 (gene) Chayote v1

Overview


Name	Sed0014331
Type	gene
Organism	Sechium edule (Chayote v1)
Description	DUF4283 domain-containing protein
Location	LG06: 3255926 .. 3256543 (+)
RNA-Seq Expression	Sed0014331
Synteny	Sed0014331

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCACTACTCCAATCTGCCAAAGAAATGTTCAATAGAAAGGAAGGATTTCTCGCTGGATCTAGATCACCGTACAAAGAACAAATTCCTGGTTCTATCAGAGAGAGGTGCGCAAAAGTCTTTTTTCATGTTTTTAATCCCCAGCTCTGTCGATTGGATTCGCTCTACTTTACAGCAACTTATTGAATGGCCAGCTAACAATAAGTTTTTTATGAAAACCCGAACGGATGATTATTCCCTTTGGATCAAGAAAACCTCAAATAGAAGGAGGCGTATTGTCGAAATCTATAGGTTTGATAACAAAGGGGGGAAAGTAGTATTATTGGTCCTAGAAGGATACAACTATAAAGGTTGGAAAGATTTTGTTGCTATGATTACTACTCAAGTTGCTACAGCAGAAGTTCCAAAAGTTGCTATTTTGAAAGATAAACGTAAGCGAAAAAGGGGATTGACCGATGAAGAATGGAATGAGCTAAATGAGATTAATGGACAGCAAAGTCAATCCTATGCTAATGTGGTCACCAACCAGGGACACACATTAATTGAAGATGGGGCCTCAACTGTTTTAAATGGTAAAGAAGACTACAAAAGTGAATGTGAGACGCTGATTTTGTAA

mRNA sequence

ATGATTCACTACTCCAATCTGCCAAAGAAATGTTCAATAGAAAGGAAGGATTTCTCGCTGGATCTAGATCACCGTACAAAGAACAAATTCCTGGTTCTATCAGAGAGAGGTGCGCAAAAGTCTTTTTTCATGTTTTTAATCCCCAGCTCTGTCGATTGGATTCGCTCTACTTTACAGCAACTTATTGAATGGCCAGCTAACAATAAGTTTTTTATGAAAACCCGAACGGATGATTATTCCCTTTGGATCAAGAAAACCTCAAATAGAAGGAGGCGTATTGTCGAAATCTATAGGTTTGATAACAAAGGGGGGAAAGTAGTATTATTGGTCCTAGAAGGATACAACTATAAAGGTTGGAAAGATTTTGTTGCTATGATTACTACTCAAGTTGCTACAGCAGAAGTTCCAAAAGTTGCTATTTTGAAAGATAAACGTAAGCGAAAAAGGGGATTGACCGATGAAGAATGGAATGAGCTAAATGAGATTAATGGACAGCAAAGTCAATCCTATGCTAATGTGGTCACCAACCAGGGACACACATTAATTGAAGATGGGGCCTCAACTGTTTTAAATGGTAAAGAAGACTACAAAAGTGAATGTGAGACGCTGATTTTGTAA

Coding sequence (CDS)

ATGATTCACTACTCCAATCTGCCAAAGAAATGTTCAATAGAAAGGAAGGATTTCTCGCTGGATCTAGATCACCGTACAAAGAACAAATTCCTGGTTCTATCAGAGAGAGGTGCGCAAAAGTCTTTTTTCATGTTTTTAATCCCCAGCTCTGTCGATTGGATTCGCTCTACTTTACAGCAACTTATTGAATGGCCAGCTAACAATAAGTTTTTTATGAAAACCCGAACGGATGATTATTCCCTTTGGATCAAGAAAACCTCAAATAGAAGGAGGCGTATTGTCGAAATCTATAGGTTTGATAACAAAGGGGGGAAAGTAGTATTATTGGTCCTAGAAGGATACAACTATAAAGGTTGGAAAGATTTTGTTGCTATGATTACTACTCAAGTTGCTACAGCAGAAGTTCCAAAAGTTGCTATTTTGAAAGATAAACGTAAGCGAAAAAGGGGATTGACCGATGAAGAATGGAATGAGCTAAATGAGATTAATGGACAGCAAAGTCAATCCTATGCTAATGTGGTCACCAACCAGGGACACACATTAATTGAAGATGGGGCCTCAACTGTTTTAAATGGTAAAGAAGACTACAAAAGTGAATGTGAGACGCTGATTTTGTAA

Protein sequence

MIHYSNLPKKCSIERKDFSLDLDHRTKNKFLVLSERGAQKSFFMFLIPSSVDWIRSTLQQLIEWPANNKFFMKTRTDDYSLWIKKTSNRRRRIVEIYRFDNKGGKVVLLVLEGYNYKGWKDFVAMITTQVATAEVPKVAILKDKRKRKRGLTDEEWNELNEINGQQSQSYANVVTNQGHTLIEDGASTVLNGKEDYKSECETLIL

Homology

[Close]

BLAST of Sed0014331 vs. NCBI nr
Match: KAA0034016.1 (hypothetical protein E6C27_scaffold400G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 8.1e-23
Identity = 56/130 (43.08%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 1   MIHYSNLPKKCSIERKDFSLDLDHRTKNKFLVLSERGAQKSFFMFLIPSSVDWIRSTLQQ 60
           M ++ +LP+ C IERK+F L LD   K+    L+E G  K+F + + P  +DWIR TL+ 
Sbjct: 1   MAYFKSLPRSCKIERKEFVLLLDKYAKHTHYWLTETGVHKAFSIEVSPRDLDWIRGTLKS 60

Query: 61  LIEWPANNKFFMKTRTDDYSLWIKKTSNRRRRIVEIYRFDNKGGKVVLLVLEGYNYKGWK 120
           LIE P++N+FF++ R  ++ +WI+KT N +  I EI+R D+K  K  +LV EG    GW 
Sbjct: 61  LIETPSSNRFFLENRDSEHCIWIRKTRNGKGCIAEIFRVDHKNRKSCILVSEGPEKSGWV 120

Query: 121 DFVAMITTQV 131
            F++MIT +V
Sbjct: 121 SFLSMITPKV 130

[Close]

BLAST of Sed0014331 vs. NCBI nr
Match: TYJ99315.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-22
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 3   HYSNLPKKCSIERKDFSLDLDHRTKNKFLVLSERGAQKSFFMFLIPSSVDWIRSTLQQLI 62
           H+ +LP+ C +ERK+F L LD  +K+    L+E GA K+F + + P  +DWIR TL+ LI
Sbjct: 57  HFKSLPRSCKVERKEFVLHLDKYSKHTHYWLTETGAHKAFSIEVSPRDLDWIRCTLKSLI 116

Query: 63  EWPANNKFFMKTRTDDYSLWIKKTSNRRRRIVEIYRFDNKGGKVVLLVLEGYNYKGWKDF 122
             P  N+FF++TR  +  +WI+KT N +    EI+R D K  K  +LV EG +  GW  F
Sbjct: 117 ATPNTNRFFLETRDSEQRIWIRKTRNSKGCTAEIFRVDQKNRKSCILVPEGPDKSGWVSF 176

Query: 123 VAMITTQV 131
           ++MIT +V
Sbjct: 177 LSMITPKV 184

[Close]

BLAST of Sed0014331 vs. NCBI nr
Match: KAA0058103.1 (hypothetical protein E6C27_scaffold274G004110 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-22
Identity = 60/154 (38.96%), Postives = 93/154 (60.39%), Query Frame = 0


Query: 1   MIHYSNLPKKCSIERKDFSLDLDHRTKNKFLVLSERGAQKSFFMFLIPSSVDWIRSTLQQ 60
           M ++ +LP+ C IERK+F L LD   K+    L+E GA K+F + + P  + WIRSTL+ 
Sbjct: 1   MAYFKSLPRSCKIERKEFVLLLDKYAKHTHYWLTETGAHKAFSIEVSPRDLYWIRSTLKS 60

Query: 61  LIEWPANNKFFMKTRTDDYSLWIKKTSNRRRRIVEIYRFDNKGGKVVLLVLEGYNYKGWK 120
           LIE P++N+FF++ R  ++ +WI+KT N +    EI+R D+K  K  +LV EG    GW 
Sbjct: 61  LIETPSSNRFFLENRDSEHCIWIRKTRNGKGCTAEIFRVDHKNRKSCILVPEGPEKSGWV 120

Query: 121 DFVAMITTQVATAEVPKVAILKDKRKRKRGLTDE 155
            F++MIT        PKV I  +   +++ L ++
Sbjct: 121 SFLSMIT--------PKVEITTNANMQRQSLKED 146

[Close]

BLAST of Sed0014331 vs. NCBI nr
Match: KAA0056565.1 (hypothetical protein E6C27_scaffold288G00700 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 5.3e-22
Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 1   MIHYSNLPKKCSIERKDFSLDLDHRTKNKFLVLSERGAQKSFFMFLIPSSVDWIRSTLQQ 60
           M ++ +LP+ C +ERK+F L LD  +K+    L+E GA K+F + + P  +DWIR TL+ 
Sbjct: 1   MAYFKSLPRSCKVERKEFVLHLDKYSKHTHYWLTETGAHKAFSIEVSPKDLDWIRCTLKS 60

Query: 61  LIEWPANNKFFMKTRTDDYSLWIKKTSNRRRRIVEIYRFDNKGGKVVLLVLEGYNYKGWK 120
           LI  P  N+FF++TR  +  +WI+KT N +    EI+R D K  K  +LV EG    GW 
Sbjct: 61  LIATPNTNRFFLETRDSEQCIWIRKTRNSKGCTAEIFRVDQKNRKSCILVPEGPEKSGWV 120

Query: 121 DFVAMITTQV 131
            F++MIT +V
Sbjct: 121 SFLSMITPKV 130

[Close]

BLAST of Sed0014331 vs. NCBI nr
Match: TYK05720.1 (hypothetical protein E5676_scaffold98G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 5.3e-22
Identity = 54/128 (42.19%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 3   HYSNLPKKCSIERKDFSLDLDHRTKNKFLVLSERGAQKSFFMFLIPSSVDWIRSTLQQLI 62
           ++ +LP+ C +ERK+F L LD  +K+    L+E GA K+F + + P  +DWIR TL+ LI
Sbjct: 59  YFKSLPRSCKVERKEFVLHLDKYSKHTHYWLTETGAHKAFSIEVSPRDLDWIRCTLKSLI 118

Query: 63  EWPANNKFFMKTRTDDYSLWIKKTSNRRRRIVEIYRFDNKGGKVVLLVLEGYNYKGWKDF 122
             P+ N+FF++TR  +  +WI+KT N +    EI+R D K  K  +LV EG +  GW  F
Sbjct: 119 ATPSTNRFFLETRDSEQCIWIRKTRNSKGCTAEIFRVDQKNRKSCILVSEGPDKSGWVSF 178

Query: 123 VAMITTQV 131
           ++MIT +V
Sbjct: 179 LSMITPKV 186

[Close]

BLAST of Sed0014331 vs. ExPASy TrEMBL
Match: A0A5A7SVM5 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00850 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.9e-23
Identity = 56/130 (43.08%), Postives = 84/130 (64.62%), Query Frame = 0


Query: 1   MIHYSNLPKKCSIERKDFSLDLDHRTKNKFLVLSERGAQKSFFMFLIPSSVDWIRSTLQQ 60
           M ++ +LP+ C IERK+F L LD   K+    L+E G  K+F + + P  +DWIR TL+ 
Sbjct: 1   MAYFKSLPRSCKIERKEFVLLLDKYAKHTHYWLTETGVHKAFSIEVSPRDLDWIRGTLKS 60

Query: 61  LIEWPANNKFFMKTRTDDYSLWIKKTSNRRRRIVEIYRFDNKGGKVVLLVLEGYNYKGWK 120
           LIE P++N+FF++ R  ++ +WI+KT N +  I EI+R D+K  K  +LV EG    GW 
Sbjct: 61  LIETPSSNRFFLENRDSEHCIWIRKTRNGKGCIAEIFRVDHKNRKSCILVSEGPEKSGWV 120

Query: 121 DFVAMITTQV 131
            F++MIT +V
Sbjct: 121 SFLSMITPKV 130

[Close]

BLAST of Sed0014331 vs. ExPASy TrEMBL
Match: A0A5A7UQG0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004110 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 60/154 (38.96%), Postives = 93/154 (60.39%), Query Frame = 0


Query: 1   MIHYSNLPKKCSIERKDFSLDLDHRTKNKFLVLSERGAQKSFFMFLIPSSVDWIRSTLQQ 60
           M ++ +LP+ C IERK+F L LD   K+    L+E GA K+F + + P  + WIRSTL+ 
Sbjct: 1   MAYFKSLPRSCKIERKEFVLLLDKYAKHTHYWLTETGAHKAFSIEVSPRDLYWIRSTLKS 60

Query: 61  LIEWPANNKFFMKTRTDDYSLWIKKTSNRRRRIVEIYRFDNKGGKVVLLVLEGYNYKGWK 120
           LIE P++N+FF++ R  ++ +WI+KT N +    EI+R D+K  K  +LV EG    GW 
Sbjct: 61  LIETPSSNRFFLENRDSEHCIWIRKTRNGKGCTAEIFRVDHKNRKSCILVPEGPEKSGWV 120

Query: 121 DFVAMITTQVATAEVPKVAILKDKRKRKRGLTDE 155
            F++MIT        PKV I  +   +++ L ++
Sbjct: 121 SFLSMIT--------PKVEITTNANMQRQSLKED 146

[Close]

BLAST of Sed0014331 vs. ExPASy TrEMBL
Match: A0A5D3BLV7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005290 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 0


Query: 3   HYSNLPKKCSIERKDFSLDLDHRTKNKFLVLSERGAQKSFFMFLIPSSVDWIRSTLQQLI 62
           H+ +LP+ C +ERK+F L LD  +K+    L+E GA K+F + + P  +DWIR TL+ LI
Sbjct: 57  HFKSLPRSCKVERKEFVLHLDKYSKHTHYWLTETGAHKAFSIEVSPRDLDWIRCTLKSLI 116

Query: 63  EWPANNKFFMKTRTDDYSLWIKKTSNRRRRIVEIYRFDNKGGKVVLLVLEGYNYKGWKDF 122
             P  N+FF++TR  +  +WI+KT N +    EI+R D K  K  +LV EG +  GW  F
Sbjct: 117 ATPNTNRFFLETRDSEQRIWIRKTRNSKGCTAEIFRVDQKNRKSCILVPEGPDKSGWVSF 176

Query: 123 VAMITTQV 131
           ++MIT +V
Sbjct: 177 LSMITPKV 184

[Close]

BLAST of Sed0014331 vs. ExPASy TrEMBL
Match: A0A5A7UST0 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00700 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-22
Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = 0


Query: 1   MIHYSNLPKKCSIERKDFSLDLDHRTKNKFLVLSERGAQKSFFMFLIPSSVDWIRSTLQQ 60
           M ++ +LP+ C +ERK+F L LD  +K+    L+E GA K+F + + P  +DWIR TL+ 
Sbjct: 1   MAYFKSLPRSCKVERKEFVLHLDKYSKHTHYWLTETGAHKAFSIEVSPKDLDWIRCTLKS 60

Query: 61  LIEWPANNKFFMKTRTDDYSLWIKKTSNRRRRIVEIYRFDNKGGKVVLLVLEGYNYKGWK 120
           LI  P  N+FF++TR  +  +WI+KT N +    EI+R D K  K  +LV EG    GW 
Sbjct: 61  LIATPNTNRFFLETRDSEQCIWIRKTRNSKGCTAEIFRVDQKNRKSCILVPEGPEKSGWV 120

Query: 121 DFVAMITTQV 131
            F++MIT +V
Sbjct: 121 SFLSMITPKV 130

[Close]

BLAST of Sed0014331 vs. ExPASy TrEMBL
Match: A0A5D3C303 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002040 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.5e-22
Identity = 54/128 (42.19%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 3   HYSNLPKKCSIERKDFSLDLDHRTKNKFLVLSERGAQKSFFMFLIPSSVDWIRSTLQQLI 62
           ++ +LP+ C +ERK+F L LD  +K+    L+E GA K+F + + P  +DWIR TL+ LI
Sbjct: 59  YFKSLPRSCKVERKEFVLHLDKYSKHTHYWLTETGAHKAFSIEVSPRDLDWIRCTLKSLI 118

Query: 63  EWPANNKFFMKTRTDDYSLWIKKTSNRRRRIVEIYRFDNKGGKVVLLVLEGYNYKGWKDF 122
             P+ N+FF++TR  +  +WI+KT N +    EI+R D K  K  +LV EG +  GW  F
Sbjct: 119 ATPSTNRFFLETRDSEQCIWIRKTRNSKGCTAEIFRVDQKNRKSCILVSEGPDKSGWVSF 178

Query: 123 VAMITTQV 131
           ++MIT +V
Sbjct: 179 LSMITPKV 186

The following BLAST results are available for this feature:

BLAST of Sed0014331 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034016.1	8.1e-23	43.08	hypothetical protein E6C27_scaffold400G00850 [Cucumis melo var. makuwa]	[more]
TYJ99315.1	3.1e-22	42.97	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0058103.1	3.1e-22	38.96	hypothetical protein E6C27_scaffold274G004110 [Cucumis melo var. makuwa]	[more]
KAA0056565.1	5.3e-22	42.31	hypothetical protein E6C27_scaffold288G00700 [Cucumis melo var. makuwa]	[more]
TYK05720.1	5.3e-22	42.19	hypothetical protein E5676_scaffold98G002040 [Cucumis melo var. makuwa]	[more]

BLAST of Sed0014331 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Sed0014331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVM5	3.9e-23	43.08	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UQG0	1.5e-22	38.96	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BLV7	1.5e-22	42.97	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7UST0	2.5e-22	42.31	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3C303	2.5e-22	42.19	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Sed0014331 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Sed0014331.1	Sed0014331.1	mRNA